Journal Description
Data
Data
is a peer-reviewed, open access journal on data in science, with the aim of enhancing data transparency and reusability. The journal publishes in two sections: a section on the collection, treatment and analysis methods of data in science; a section publishing descriptions of scientific and scholarly datasets (one dataset per paper). The journal is published monthly online by MDPI.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, ESCI (Web of Science), Ei Compendex, dblp, Inspec, RePEc, and other databases.
- Journal Rank: JCR - Q2 (Multidisciplinary Sciences) / CiteScore - Q2 (Information Systems and Management)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 27.7 days after submission; acceptance to publication is undertaken in 3.5 days (median values for papers published in this journal in the first half of 2024).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
2.2 (2023);
5-Year Impact Factor:
2.4 (2023)
Latest Articles
Advanced Methodology for Emulating Local Operating Conditions in Proton Exchange Membrane Fuel Cells
Data 2024, 9(12), 152; https://doi.org/10.3390/data9120152 - 20 Dec 2024
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This work focuses on the study of operating heterogeneities on a large MEA’s active surface area in a PEMFC stack. An advanced methodology is developed, aiming at the prediction of local operating conditions such as temperature, relative humidity and species concentration. A physics-based
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This work focuses on the study of operating heterogeneities on a large MEA’s active surface area in a PEMFC stack. An advanced methodology is developed, aiming at the prediction of local operating conditions such as temperature, relative humidity and species concentration. A physics-based Pseudo-3D model developed under COMSOL Multiphysics allows for the observation of heterogeneities over the entire active surface area. Once predicted, these local operating conditions are experimentally emulated, thanks to a differential cell, to provide the local polarization curves and electrochemical impedance spectra. Coupling simulation and experimental, thirty-seven local operating conditions are emulated to examine the degree of correlation between local operating conditions and PEMFC cell performances. Researchers and engineers can use the polarization curves and Electrochemical Impedance Spectroscopy diagrams to fit the variables of an empirical model or to validate the results of a theoretical model.
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Open AccessArticle
A Framework for Current and New Data Quality Dimensions: An Overview
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Russell Miller, Harvey Whelan, Michael Chrubasik, David Whittaker, Paul Duncan and João Gregório
Data 2024, 9(12), 151; https://doi.org/10.3390/data9120151 - 18 Dec 2024
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This paper presents a comprehensive exploration of data quality terminology, revealing a significant lack of standardisation in the field. The goal of this work was to conduct a comparative analysis of data quality terminology across different domains and structure it into a hierarchical
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This paper presents a comprehensive exploration of data quality terminology, revealing a significant lack of standardisation in the field. The goal of this work was to conduct a comparative analysis of data quality terminology across different domains and structure it into a hierarchical data model. We propose a novel approach for aggregating disparate data quality terms used to describe the multiple facets of data quality under common umbrella terms with a focus on the ISO 25012 standard. We introduce four additional data quality dimensions: governance, usefulness, quantity, and semantics. These dimensions enhance specificity, complementing the framework established by the ISO 25012 standard, as well as contribute to a broad understanding of data quality aspects. The ISO 25012 standard, a general standard for managing the data quality in information systems, offers a foundation for the development of our proposed Data Quality Data Model. This is due to the prevalent nature of digital systems across a multitude of domains. In contrast, frameworks such as ALCOA+, which were originally developed for specific regulated industries, can be applied more broadly but may not always be generalisable. Ultimately, the model we propose aggregates and classifies data quality terminology, facilitating seamless communication of the data quality between different domains when collaboration is required to tackle cross-domain projects or challenges. By establishing this hierarchical model, we aim to improve understanding and implementation of data quality practices, thereby addressing critical issues in various domains.
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Genome-Scale DNA Methylome and Transcriptome Profiles of Prostate Cancer Recurrence After Prostatectomy
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Jim Smith, Priyadarshana Ajithkumar, Emma J. Wilkinson, Atreyi Dutta, Sai Shyam Vasantharajan, Angela Yee, Gregory Gimenez, Rathan M. Subramaniam, Michael Lau, Amir D. Zarrabi, Euan J. Rodger and Aniruddha Chatterjee
Data 2024, 9(12), 150; https://doi.org/10.3390/data9120150 - 16 Dec 2024
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Prostate cancer (PCa) is a major health burden worldwide, and despite early treatment, many patients present with biochemical recurrence (BCR) post-treatment, reflected by a rise in prostate-specific antigen (PSA) over a clinical threshold. Novel transcriptomic and epigenomic biomarkers can provide a powerful tools
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Prostate cancer (PCa) is a major health burden worldwide, and despite early treatment, many patients present with biochemical recurrence (BCR) post-treatment, reflected by a rise in prostate-specific antigen (PSA) over a clinical threshold. Novel transcriptomic and epigenomic biomarkers can provide a powerful tools for the clinical management of PCa. Here, we provide matched RNA sequencing and array-based genome-wide DNA methylome data of PCa patients (n = 17) with or without evidence of BCR following radical prostatectomy. Formalin-fixed paraffin-embedded (FFPE) tissues were used to generate these data, which included technical replicates to provide further validity of the data. We describe the sample features, experimental design, methods and bioinformatic pipelines for processing these multi-omic data. Importantly, comprehensive clinical, histopathological, and follow-up data for each patient were provided to enable the correlation of transcriptome and methylome features with clinical features. Our data will contribute towards the efforts of developing epigenomic and transcriptomic markers for BCR and also facilitate a deeper understanding of the molecular basis of PCa recurrence.
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Unlocking New Opportunities for Spatial Analysis of Farms’ Income and Business Activities in Italy: The Agricultural Regions in Shapefile Format
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Sara Quaresima, Pasquale Nino, Concetta Cardillo and Arianna Di Paola
Data 2024, 9(12), 149; https://doi.org/10.3390/data9120149 - 13 Dec 2024
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Italy is divided into 773 Agricultural Regions (ARs) based on shared physical and agronomic characteristics. These regions offer a valuable tool for analyzing various geographical, socio-economic, and environmental aspects of agriculture, including the climate. However, the ARs have lacked geospatial data, limiting their
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Italy is divided into 773 Agricultural Regions (ARs) based on shared physical and agronomic characteristics. These regions offer a valuable tool for analyzing various geographical, socio-economic, and environmental aspects of agriculture, including the climate. However, the ARs have lacked geospatial data, limiting their analytical potential. This study introduces the “Italian ARs Dataset”, a georeferenced shapefile defining the boundaries of each AR. This dataset facilitates geographical assessments of Italy’s complex agricultural sector. It also unlocks the potential for integrating AR data with other datasets like the Farm Accounting Data Network (FADN) dataset, in Italy represented by the Rete di Informazione Contabile Agricola (RICA), which samples hundreds of thousands of farms annually. To demonstrate the dataset’s utility, a large sample of RICA data encompassing 179 irrigated crops from 2011 to 2021, covering all of Italy, was retrieved. Validation confirmed successful assignment of all ARs present in the RICA sample to the corresponding shapefile. Additionally, to encourage the use of the ARs Dataset with gridded data, different spatial-scale resolutions are tested to identify a suitable threshold. The minimal spatial scale identified is 0.11 degrees, a commonly adopted scale by several climate datasets within the EURO-CORDEX and COPERNICUS programs.
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(This article belongs to the Section Spatial Data Science and Digital Earth)
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Teal-WCA: A Climate Services Platform for Planning Solar Photovoltaic and Wind Energy Resources in West and Central Africa in the Context of Climate Change
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Salomon Obahoundje, Arona Diedhiou, Alberto Troccoli, Penny Boorman, Taofic Abdel Fabrice Alabi, Sandrine Anquetin, Louise Crochemore, Wanignon Ferdinand Fassinou, Benoit Hingray, Daouda Koné, Chérif Mamadou and Fatogoma Sorho
Data 2024, 9(12), 148; https://doi.org/10.3390/data9120148 - 10 Dec 2024
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To address the growing electricity demand driven by population growth and economic development while mitigating climate change, West and Central African countries are increasingly prioritizing renewable energy as part of their Nationally Determined Contributions (NDCs). This study evaluates the implications of climate change
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To address the growing electricity demand driven by population growth and economic development while mitigating climate change, West and Central African countries are increasingly prioritizing renewable energy as part of their Nationally Determined Contributions (NDCs). This study evaluates the implications of climate change on renewable energy potential using ten downscaled and bias-adjusted CMIP6 models (CDFt method). Key climate variables—temperature, solar radiation, and wind speed—were analyzed and integrated into the Teal-WCA platform to aid in energy resource planning. Projected temperature increases of 0.5–2.7 °C (2040–2069) and 0.7–5.2 °C (2070–2099) relative to 1985–2014 underscore the need for strategies to manage the rising demand for cooling. Solar radiation reductions (~15 W/m2) may lower photovoltaic (PV) efficiency by 1–8.75%, particularly in high-emission scenarios, requiring a focus on system optimization and diversification. Conversely, wind speeds are expected to increase, especially in coastal regions, enhancing wind power potential by 12–50% across most countries and by 25–100% in coastal nations. These findings highlight the necessity of integrating climate-resilient energy policies that leverage wind energy growth while mitigating challenges posed by reduced solar radiation. By providing a nuanced understanding of the renewable energy potential under changing climatic conditions, this study offers actionable insights for sustainable energy planning in West and Central Africa.
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Open AccessArticle
Parallel Simplex, an Alternative to Classical Experimentation: A Case Study
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Francisco Zorrilla Briones, Inocente Yuliana Meléndez Pastrana, Manuel Alonso Rodríguez Morachis and José Luís Anaya Carrasco
Data 2024, 9(12), 147; https://doi.org/10.3390/data9120147 - 10 Dec 2024
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Experimentation is a strong methodology that improves and optimizes processes. Nevertheless, in many cases, real-life dynamics of production demands and other restrictions inhibit the use of these methodologies because their use implies stopping production, generating scrap, jeopardizing demand accomplishments, and other problems. Proposed
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Experimentation is a strong methodology that improves and optimizes processes. Nevertheless, in many cases, real-life dynamics of production demands and other restrictions inhibit the use of these methodologies because their use implies stopping production, generating scrap, jeopardizing demand accomplishments, and other problems. Proposed here is an alternative methodology to search for the best process variable levels and optimize the response of the process without the need to stop production. This algorithm is based on the principles of the Variable Simplex developed by Nelder and Mead and the continuous iterative process of EVOPS developed by Box, which is then modified as a simplex by Spendley. It is named parallel simplex because it searches for the best response with three independent Simplexes searching for the same response at the same time. The algorithm was designed for three simplexes of two input variables each. The case study documented shows that it is efficient and effective.
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(This article belongs to the Special Issue Cutting-Edge Datasets and Algorithms for Enhancing Industrial Processes and Supply Chain Optimization)
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Data Decomposition Modeling Based on Improved Dung Beetle Optimization Algorithm for Wind Power Prediction
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Jiajian Ke and Tian Chen
Data 2024, 9(12), 146; https://doi.org/10.3390/data9120146 - 9 Dec 2024
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Accurate wind power forecasting is essential for maintaining the stability of a power system and enhancing scheduling efficiency in the power sector. To enhance prediction accuracy, this paper presents a hybrid wind power prediction model that integrates the improved complementary ensemble empirical mode
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Accurate wind power forecasting is essential for maintaining the stability of a power system and enhancing scheduling efficiency in the power sector. To enhance prediction accuracy, this paper presents a hybrid wind power prediction model that integrates the improved complementary ensemble empirical mode decomposition (ICEEMDAN), the RIME optimization algorithm (RIME), sample entropy (SE), the improved dung beetle optimization (IDBO) algorithm, the bidirectional long short-term memory (BiLSTM) network, and multi-head attention (MHA). In this model, RIME is utilized to improve the parameters of ICEEMDAN, reducing data decomposition complexity and effectively capturing the original data information. The IDBO algorithm is then utilized to improve the hyperparameters of the MHA-BiLSTM model. The proposed RIME-ICEEMDAN-IDBO-MHA-BiLSTM model is contrasted with ten others in ablation experiments to validate its performance. The experimental findings prove that the proposed model achieves MAPE values of 5.2%, 6.3%, 8.3%, and 5.8% across four datasets, confirming its superior predictive performance and higher accuracy.
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(This article belongs to the Topic Decision-Making and Data Mining for Sustainable Computing)
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Formalization for Subsequent Computer Processing of Kara Sea Coastline Data
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Daria Bogatova and Stanislav Ogorodov
Data 2024, 9(12), 145; https://doi.org/10.3390/data9120145 - 9 Dec 2024
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This study aimed to develop a methodological framework for predicting shoreline dynamics using machine learning techniques, focusing on analyzing generalized data without distinguishing areas with higher or lower retreat rates. Three sites along the southwestern Kara Sea coast were selected for this investigation.
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This study aimed to develop a methodological framework for predicting shoreline dynamics using machine learning techniques, focusing on analyzing generalized data without distinguishing areas with higher or lower retreat rates. Three sites along the southwestern Kara Sea coast were selected for this investigation. The study analyzed key coastal features, including lithology, permafrost, and geomorphology, using a combination of field studies and remote sensing data. Essential datasets were compiled and formatted for computer-based analysis. These datasets included information on permafrost and the geomorphological characteristics of the coastal zone, climatic factors influencing the shoreline, and measurements of bluff top positions and retreat rates over defined time periods. The positions of the bluff tops were determined through a combination of imagery with varying resolutions and field measurements. A novel aspect of the study involved employing geostatistical methods to analyze erosion rates, providing new insights into the shoreline dynamics. The data analysis allowed us to identify coastal areas experiencing the most significant changes. By continually refining neural network models with these datasets, we can improve our understanding of the complex interactions between natural factors and shoreline evolution, ultimately aiding in developing effective coastal management strategies.
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Multi-Modal Dataset of Human Activities of Daily Living with Ambient Audio, Vibration, and Environmental Data
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Thomas Pfitzinger, Marcel Koch, Fabian Schlenke and Hendrik Wöhrle
Data 2024, 9(12), 144; https://doi.org/10.3390/data9120144 - 9 Dec 2024
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The detection of human activities is an important step in automated systems to understand the context of given situations. It can be useful for applications like healthcare monitoring, smart homes, and energy management systems for buildings. To achieve this, a sufficient data basis
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The detection of human activities is an important step in automated systems to understand the context of given situations. It can be useful for applications like healthcare monitoring, smart homes, and energy management systems for buildings. To achieve this, a sufficient data basis is required. The presented dataset contains labeled recordings of 25 different activities of daily living performed individually by 14 participants. The data were captured by five multisensors in supervised sessions in which a participant repeated each activity several times. Flawed recordings were removed, and the different data types were synchronized to provide multi-modal data for each activity instance. Apart from this, the data are presented in raw form, and no further filtering was performed. The dataset comprises ambient audio and vibration, as well as infrared array data, light color and environmental measurements. Overall, 8615 activity instances are included, each captured by the five multisensor devices. These multi-modal and multi-channel data allow various machine learning approaches to the recognition of human activities, for example, federated learning and sensor fusion.
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A Data Storage, Analysis, and Project Administration Engine (TMFdw) for Small- to Medium-Size Interdisciplinary Ecological Research Programs with Full Raster Data Capabilities
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Paulina Grigusova, Christian Beilschmidt, Maik Dobbermann, Johannes Drönner, Michael Mattig, Pablo Sanchez, Nina Farwig and Jörg Bendix
Data 2024, 9(12), 143; https://doi.org/10.3390/data9120143 - 6 Dec 2024
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Over almost 20 years, a data storage, analysis, and project administration engine (TMFdw) has been continuously developed in a series of several consecutive interdisciplinary research projects on functional biodiversity of the southern Andes of Ecuador. Starting as a “working database”, the system now
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Over almost 20 years, a data storage, analysis, and project administration engine (TMFdw) has been continuously developed in a series of several consecutive interdisciplinary research projects on functional biodiversity of the southern Andes of Ecuador. Starting as a “working database”, the system now includes program management modules and literature databases, which are all accessible via a web interface. Originally designed to manage data in the ecological Research Unit 816 (SE Ecuador), the open software is now being used in several other environmental research programs, demonstrating its broad applicability. While the system was mainly developed for abiotic and biotic tabular data in the beginning, the new research program demands full capabilities to work with area-wide and high-resolution big models and remote sensing raster data. Thus, a raster engine was recently implemented based on the Geo Engine technology. The great variety of pre-implemented desktop GIS-like analysis options for raster point and vector data is an important incentive for researchers to use the system. A second incentive is to implement use cases prioritized by the researchers. As an example, we present machine learning models to generate high-resolution (30 m) microclimate raster layers for the study area in different temporal aggregation levels for the most important variables of air temperature, humidity, precipitation, and solar radiation. The models implemented as use cases outperform similar models developed in other research programs.
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Nearest-Better Network-Assisted Fitness Landscape Analysis of Contaminant Source Identification in Water Distribution Network
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Yiya Diao, Changhe Li, Sanyou Zeng and Shengxiang Yang
Data 2024, 9(12), 142; https://doi.org/10.3390/data9120142 - 6 Dec 2024
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Contaminant Source Identification in Water Distribution Network (CSWIDN) is critical for ensuring public health, and optimization algorithms are commonly used to solve this complex problem. However, these algorithms are highly sensitive to the problem’s landscape features, which has limited their effectiveness in practice.
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Contaminant Source Identification in Water Distribution Network (CSWIDN) is critical for ensuring public health, and optimization algorithms are commonly used to solve this complex problem. However, these algorithms are highly sensitive to the problem’s landscape features, which has limited their effectiveness in practice. Despite this, there has been little experimental analysis of the fitness landscape for CSWIDN, particularly given its mixed-encoding nature. This study addresses this gap by conducting a comprehensive fitness landscape analysis of CSWIDN using the Nearest-Better Network (NBN), the only applicable method for mixed-encoding problems. Our analysis reveals for the first time that CSWIDN exhibits the landscape features, including neutrality, ruggedness, modality, dynamic change, and separability. These findings not only deepen our understanding of the problem’s inherent landscape features but also provide quantitative insights into how these features influence algorithm performance. Additionally, based on these insights, we propose specific algorithm design recommendations that are better suited to the unique challenges of the CSWIDN problem. This work advances the knowledge of CSWIDN optimization by both qualitatively characterizing its landscape and quantitatively linking these features to algorithms’ behaviors.
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(This article belongs to the Topic Water and Energy Monitoring and Their Nexus)
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A Dataset of Plant Species Richness in Chinese National Nature Reserves
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Chunjing Wang, Wuxian Yan and Jizhong Wan
Data 2024, 9(12), 141; https://doi.org/10.3390/data9120141 - 30 Nov 2024
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This comprehensive dataset on the number of plant species, genera, and families in 383 national nature reserves in China has been compiled based on the available literature. Heilongjiang Province and the Guangxi Zhuang Autonomous Region have the highest number of nature reserves. Species
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This comprehensive dataset on the number of plant species, genera, and families in 383 national nature reserves in China has been compiled based on the available literature. Heilongjiang Province and the Guangxi Zhuang Autonomous Region have the highest number of nature reserves. Species richness is relatively high in the Jinfoshan, Dabashan, Wenshan, Hupingshan, and Shennongjia Nature Reserves. This dataset provides important baseline information on plant species richness coupling with genus and family numbers in Chinese national nature reserves and should help researchers and environmentalists understand the dynamic species changes in various nature reserves. This detailed and reliable information may serve as the foundation for future plant research in Chinese nature reserves and play a positive role in promoting more effective natural protection, biological distribution, and biodiversity conservation in these areas.
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Algorithm for Trajectory Simplification Based on Multi-Point Construction in Preselected Area and Noise Smoothing Processing
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Simin Huang and Zhiying Yang
Data 2024, 9(12), 140; https://doi.org/10.3390/data9120140 - 29 Nov 2024
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Simplifying trajectory data can improve the efficiency of trajectory data analysis and query and reduce the communication cost and computational overhead of trajectory data. In this paper, a real-time trajectory simplification algorithm (SSFI) based on the spatio-temporal feature information of implicit trajectory points
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Simplifying trajectory data can improve the efficiency of trajectory data analysis and query and reduce the communication cost and computational overhead of trajectory data. In this paper, a real-time trajectory simplification algorithm (SSFI) based on the spatio-temporal feature information of implicit trajectory points is proposed. The algorithm constructs the preselected area through the error measurement method based on the feature information of implicit trajectory points (IEDs) proposed in this paper, predicts the falling point of trajectory points, and realizes the one-way error-bounded simplified trajectory algorithm. Experiments show that the simplified algorithm has obvious progress in three aspects: running speed, compression accuracy, and simplification rate. When the trajectory data scale is large, the performance of the algorithm is much better than that of other line segment simplification algorithms. The GPS error cannot be avoided. The Kalman filter smoothing trajectory can effectively eliminate the influence of noise and significantly improve the performance of the simplified algorithm. According to the characteristics of the trajectory data, this paper accurately constructs a mathematical model to describe the motion state of objects, so that the performance of the Kalman filter is better than other filters when smoothing trajectory data. In this paper, the trajectory data smoothing experiment is carried out by adding random Gaussian noise to the trajectory data. The experiment shows that the Kalman filter’s performance under the mathematical model is better than other filters.
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(This article belongs to the Special Issue IoT and Big Data Applications in Smart Cities: Recent Advances, Challenges, and Critical Issues)
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Detective Gadget: Generic Iterative Entity Resolution over Dirty Data
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Marcello Buoncristiano, Giansalvatore Mecca, Donatello Santoro and Enzo Veltri
Data 2024, 9(12), 139; https://doi.org/10.3390/data9120139 - 25 Nov 2024
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In the era of Big Data, entity resolution (ER), i.e., the process of identifying which records refer to the same entity in the real world, plays a critical role in data-integration tasks, especially in mission-critical applications where accuracy is mandatory, since we want
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In the era of Big Data, entity resolution (ER), i.e., the process of identifying which records refer to the same entity in the real world, plays a critical role in data-integration tasks, especially in mission-critical applications where accuracy is mandatory, since we want to avoid integrating different entities or missing matches. However, existing approaches struggle with the challenges posed by rapidly changing data and the presence of dirtiness, which requires an iterative refinement during the time. We present Detective Gadget, a novel system for iterative ER that seamlessly integrates data-cleaning into the ER workflow. Detective Gadgetemploys an alias-based hashing mechanism for fast and scalable matching, check functions to detect and correct mismatches, and a human-in-the-loop framework to refine results through expert feedback. The system iteratively improves data quality and matching accuracy by leveraging evidence from both automated and manual decisions. Extensive experiments across diverse real-world scenarios demonstrate its effectiveness, achieving high accuracy and efficiency while adapting to evolving datasets.
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(This article belongs to the Section Information Systems and Data Management)
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CARE to Compare: A Real-World Benchmark Dataset for Early Fault Detection in Wind Turbine Data
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Christian Gück, Cyriana M. A. Roelofs and Stefan Faulstich
Data 2024, 9(12), 138; https://doi.org/10.3390/data9120138 - 23 Nov 2024
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Early fault detection plays a crucial role in the field of predictive maintenance for wind turbines, yet the comparison of different algorithms poses a difficult task because domain-specific public datasets are scarce. Many comparisons of different approaches either use benchmarks composed of data
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Early fault detection plays a crucial role in the field of predictive maintenance for wind turbines, yet the comparison of different algorithms poses a difficult task because domain-specific public datasets are scarce. Many comparisons of different approaches either use benchmarks composed of data from many different domains, inaccessible data, or one of the few publicly available datasets that lack detailed information about the faults. Moreover, many publications highlight a couple of case studies where fault detection was successful. With this paper, we publish a high quality dataset that contains data from 36 wind turbines across 3 different wind farms as well as the most detailed fault information of any public wind turbine dataset as far as we know. The new dataset contains 89 years worth of real-world operating data of wind turbines, distributed across 44 labeled time frames for anomalies that led up to faults, as well as 51 time series representing normal behavior. Additionally, the quality of training data is ensured by turbine-status-based labels for each data point. Furthermore, we propose a new scoring method, called CARE (Coverage, Accuracy, Reliability and Earliness), which takes advantage of the information depth that is present in the dataset to identify good early fault detection models for wind turbines. This score considers the anomaly detection performance, the ability to recognize normal behavior properly, and the capability to raise as few false alarms as possible while simultaneously detecting anomalies early.
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Dual Transcriptome of Post-Germinating Mutant Lines of Arabidopsis thaliana Infected by Alternaria brassicicola
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Mailen Ortega-Cuadros, Laurine Chir, Sophie Aligon, Nubia Velasquez, Tatiana Arias, Jerome Verdier and Philippe Grappin
Data 2024, 9(11), 137; https://doi.org/10.3390/data9110137 - 18 Nov 2024
Abstract
Alternaria brassicicola is a seed-borne pathogen that causes black spot disease in Brassica crops, yet the seed defense mechanisms against this fungus remain poorly understood. Building upon recent reports that highlighted the involvement of indole pathways in seeds infected by Alternaria, this
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Alternaria brassicicola is a seed-borne pathogen that causes black spot disease in Brassica crops, yet the seed defense mechanisms against this fungus remain poorly understood. Building upon recent reports that highlighted the involvement of indole pathways in seeds infected by Alternaria, this study provides transcriptomic resources to further elucidate the role of these metabolic pathways during the interaction between seeds and fungal pathogens. Using RNA sequencing, we examined the gene expression of glucosinolate-deficient mutant lines (cyp79B2/cyp79B3 and qko) and a camalexin-deficient line (pad3), generating a dataset from 14 samples. These samples were inoculated with Alternaria or water, and collected at 3, 6, and 10 days after sowing to extract total RNA. Sequencing was performed using DNBseq™ technology, followed by bioinformatics analyses with tools such as FastQC (version 0.11.9), multiQC (version 1.13), Venny (version 2.0), Salmon software (version 0.14.1), and R packages DESeq2 (version 1.36.0), ClusterProfiler (version 4.12.6) and ggplot2 (version 3.4.0). By providing this valuable dataset, we aim to contribute to a deeper understanding of seed defense mechanisms against Alternaria, leveraging RNA-seq for various analyses, including differential gene expression and co-expression correlation. This work serves as a foundation for a more comprehensive grasp of the interactions during seed infection and highlights potential targets for enhancing crop protection and management.
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(This article belongs to the Section Computational Biology, Bioinformatics, and Biomedical Data Science)
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Two Datasets over South Tyrol and Tyrol Areas to Understand and Characterize Water Resource Dynamics in Mountain Regions
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Ludovica De Gregorio, Giovanni Cuozzo, Riccardo Barella, Francisco Corvalán, Felix Greifeneder, Peter Grosse, Abraham Mejia-Aguilar, Georg Niedrist, Valentina Premier, Paul Schattan, Alessandro Zandonai and Claudia Notarnicola
Data 2024, 9(11), 136; https://doi.org/10.3390/data9110136 - 16 Nov 2024
Abstract
In this work, we present two datasets for specific areas located on the Alpine arc that can be exploited to monitor and understand water resource dynamics in mountain regions. The idea is to provide the reader with information about the different sources of
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In this work, we present two datasets for specific areas located on the Alpine arc that can be exploited to monitor and understand water resource dynamics in mountain regions. The idea is to provide the reader with information about the different sources of water supply over five defined test areas over the South Tyrol (Italy) and Tyrol (Austria) areas in alpine environments. The snow cover fraction (SCF) and Soil Moisture Content (SMC) datasets are derived from machine learning algorithms based on remote sensing data. Both SCF and SMC products are characterized by a spatial resolution of 20 m and are provided for the period from October 2020 to May 2023 (SCF) and from October 2019 to September 2022 (SMC), respectively, covering winter seasons for SCF and spring–summer seasons for SMC. For SCF maps, the validation with very high-resolution images shows high correlation coefficients of around 0.9. The SMC products were originally produced with an algorithm validated at a global scale, but here, to obtain more insights into the specific alpine mountain environment, the values estimated from the maps are compared with ground measurements of automatic stations located at different altitudes and characterized by different aspects in the Val Mazia catchment in South Tyrol (Italy). In this case, an MAE between 0.05 and 0.08 and an unbiased RMSE between 0.05 and 0.09 m3·m−3 were achieved. The datasets presented can be used as input for hydrological models and to hydrologically characterize the study alpine area starting from different sources of information.
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(This article belongs to the Topic Techniques and Science Exploitations for Earth Observation and Planetary Exploration)
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Dataset to Quantify Spillover Effects Among Concurrent Green Initiatives
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Rong Zhang, Qi Zhang, Conghe Song and Li An
Data 2024, 9(11), 135; https://doi.org/10.3390/data9110135 - 13 Nov 2024
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Green initiatives are popular mechanisms globally to enhance environmental and human wellbeing. However, multiple green initiatives, when overlapping geographically and targeting the same participants, may interact with each other, giving rise to what is termed “spillover effects”, where one initiative and its outcomes
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Green initiatives are popular mechanisms globally to enhance environmental and human wellbeing. However, multiple green initiatives, when overlapping geographically and targeting the same participants, may interact with each other, giving rise to what is termed “spillover effects”, where one initiative and its outcomes influence another. This study examines the spillover effects among four major concurrent initiatives in the United States (U.S.) and China using a comprehensive dataset. In the U.S., we analysed county-level data in 2018 for the Conservation Reserve Program (CRP) and the Environmental Quality Incentives Program (EQIP), both operational for over 25 years. In China, data from Fanjingshan and Tianma National Nature Reserves (2014–2015) were used to evaluate the Grain-to-Green Program (GTGP) and the Forest Ecological Benefit Compensation (FEBC) program. The dataset comprises 3106 records for the U.S. and 711 plots for China, including several socio-economic variables. The results of multivariate linear regression indicate that there exist significant spillover effects between CRP & EQIP and GTGP & FEBC, with one initiative potentially enhancing or offsetting another’s impacts by 22% to 100%. This dataset provides valuable insights for researchers and policymakers to optimize the effectiveness and resilience of concurrent green initiatives.
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The Design of a Script Identification Algorithm and Its Application in Constructing a Text Language Identification Dataset
by
Mamtimin Qasim, Wushour Silamu and Minghui Qiu
Data 2024, 9(11), 134; https://doi.org/10.3390/data9110134 - 11 Nov 2024
Abstract
Script identification is easier to implement than language identification, and its identification rate is very high. The fewer languages are identified when using a language identification algorithm, the higher the identification rate is. However, no systematic study on SI involving multiple languages and
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Script identification is easier to implement than language identification, and its identification rate is very high. The fewer languages are identified when using a language identification algorithm, the higher the identification rate is. However, no systematic study on SI involving multiple languages and determining how to construct relevant language identification datasets has been conducted. Therefore, in this paper, we discuss and design a script identification algorithm and the construction of a language identification dataset based on script groups. The data sources in this paper comprise 261 different languages’ text corpora from the Leipzig Corpora Collection, which are grouped into 23 different script groups. In the Unicode encoding scheme, different scripts are arranged into different code regions. Based on this feature, we propose a written script identification algorithm based on regular expression matching, the micro F-score of which reaches 0.9929 in sentence-level script identification experiments. To reduce noise when constructing the language identification dataset for each script, a script identification algorithm is used to filter out other-script content in each text.
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(This article belongs to the Section Information Systems and Data Management)
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Additions to Space Physics Data Facility and pysatNASA: Increasing Mars Global Surveyor and Mars Atmosphere and Volatile EvolutioN Dataset Utility
by
Teresa M. Esman, Alexa J. Halford, Jeff Klenzing and Angeline G. Burrell
Data 2024, 9(11), 133; https://doi.org/10.3390/data9110133 - 8 Nov 2024
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The Space Physics Data Facility (SPDF) is a digital archive of space physics data and is useful for the storage, analysis, and dissemination of data. We discuss the process used to create an amended dataset and store it on the SPDF. The operational
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The Space Physics Data Facility (SPDF) is a digital archive of space physics data and is useful for the storage, analysis, and dissemination of data. We discuss the process used to create an amended dataset and store it on the SPDF. The operational software to generate the archival data software uses the open-source Python package pysat, and an end-user module has been added to the pysatNASA module. The result is the addition of data products to the Mars Global Surveyor (MGS) magnetometer (MAG) dataset, its archival location on SPDF, and pysat compatibility. The primary and metadata format increases the convenience and efficiency for users of the MGS MAG data. The storage of planetary and heliophysics data in one location supports the use of data throughout the solar system for comparison, while pysat compatibility enables loading data in an identical format for ease of processing. We encourage the use of the outlined process for past, present, and future space science missions of all sizes and funding levels. This includes balloons to Flagship-class missions.
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