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Phage-Based Approaches for Potential Integration into Bivalve Depuration Systems -
Analysis of Respiratory Behaviour of Thicklipped Grey Mullet (Chelon labrosus) Juveniles Under Different Rearing Conditions -
The Copepod/Artemia Trade-Off in the Culture of Long Snouted Seahorse Hippocampus guttulatus -
Utilization of Plant-Derived Essential Oils as Natural Alternatives for Controlling Fish Pathogens: A Critical Review of Their Use Against Aeromonas hydrophila
Journal Description
Fishes
Fishes
is an international, peer-reviewed, scientific, open access journal covering fishes and aquatic animals research, and is published monthly online by MDPI. The Iberian Society of Ichthyology (SIBIC) and Brazilian Society of Aquaculture and Aquatic Biology (Aquabio) are affiliated with Fishes and their members receive a discount on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), GEOBASE, PubAg, FSTA, and other databases.
- Journal Rank: JCR - Q1 (Marine and Freshwater Biology) / CiteScore - Q1 (Ecology, Evolution, Behavior and Systematics)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 18.7 days after submission; acceptance to publication is undertaken in 3.6 days (median values for papers published in this journal in the second half of 2025).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
- Testimonials: See what our editors and authors say about Fishes.
- Companion journals for Fishes include: Aquaculture Journal and Smart Fisheries.
Impact Factor:
2.4 (2024);
5-Year Impact Factor:
2.4 (2024)
Latest Articles
Effects of Simulated Tunnel Darkness on Histology of Schizothorax macropogon
Fishes 2026, 11(6), 340; https://doi.org/10.3390/fishes11060340 (registering DOI) - 5 Jun 2026
Abstract
Schizothorax macropogon is an endemic fish species of the Tibetan Plateau whose distribution largely overlaps with hydropower facilities. In this study, the fish were exposed to simulated tunnel darkness for 7 days to evaluate microstructural changes in the gills, dorsal muscle, and midgut.
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Schizothorax macropogon is an endemic fish species of the Tibetan Plateau whose distribution largely overlaps with hydropower facilities. In this study, the fish were exposed to simulated tunnel darkness for 7 days to evaluate microstructural changes in the gills, dorsal muscle, and midgut. The results showed that gill lamellae exhibited divergent trends with continued bending and shortening in the dark group, contrasting with rupture in the control group. Moreover, the number of mitochondria-rich cells in the dark group increased initially and then decreased, while remaining stable and evenly distributed in the control group. No significant pathological damage was observed in the skeletal muscles of both groups, and muscle fiber diameters displayed a “V”-shaped trend over time in both groups. However, muscle fiber diameters were significantly smaller in the dark group than in the control group. Furthermore, intestinal villus height decreased continuously over time in both groups, with goblet cell numbers initially rising before falling and consistently remaining lower in the dark group compared to the control group. These findings suggest that short-term exposure to darkness may disrupt circadian rhythms, induce behavioral anomalies and energy metabolism disorders, leading to microstructural alterations in gill, muscle, and intestinal tissues that reflect either adaptation or damage. This study provides histological insights into the physiological effects of tunnel darkness on fish and offers key scientific evidence for optimizing lighting conditions in plateau tunnel fishways.
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(This article belongs to the Special Issue Ecohydrology and River Connectivity: Implications for Fish Conservation)
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Length-Based Stock Assessment of Six Shallow-Water Demersal Fishes in the Colombian Caribbean Sea
by
Alfredo Rodriguez, Jesus Montoya, Mario Rueda and Jean R. Linero-Cueto
Fishes 2026, 11(6), 339; https://doi.org/10.3390/fishes11060339 (registering DOI) - 5 Jun 2026
Abstract
Scientific knowledge-based fishery management is essential to ensure the sustainability of marine resources, particularly in regions where fisheries are data-limited. This study assessed the stock status of six shallow-water demersal fish species (Bagre marinus, Cathorops mapale, Diapterus rhombeus, Eucinostomus
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Scientific knowledge-based fishery management is essential to ensure the sustainability of marine resources, particularly in regions where fisheries are data-limited. This study assessed the stock status of six shallow-water demersal fish species (Bagre marinus, Cathorops mapale, Diapterus rhombeus, Eucinostomus argenteus, Haemulopsis corvinaeformis, and Lutjanus synagris) in the Colombian Caribbean Sea using three complementary length-based models: length-based indicators (LBIs), length-based spawning potential ratio (LBSPR), and the Length-Based Bayesian Biomass estimator (LBB). The integrated results demonstrated that five species (C. mapale, D. rhombeus, E. argenteus, H. corvinaeformis, and L. synagris) are currently overexploited (F/M > 1 and B/BMSY < 1), while B. marinus is experiencing overfishing (F/M > 1 and B/BMSY > 1), with a high risk of surpassing its maximum sustainable yield. These outcomes confirm that demersal fish populations in the Colombian Caribbean are being exploited beyond sustainable biological limits. With the aim of promoting stock recovery and long-term sustainability, this study recommends the implementation of recently evaluated management measures focused on (i) the implementation and enforcement of Bycatch Reduction Devices (BRDs); (ii) the regulation and monitoring of trawl net mesh sizes to improve selectivity patterns; (iii) the establishment of spatial and temporal closures in critical spawning areas for demersal fish species; and (iv) the strengthening of fishery monitoring and data collection systems. The findings provide critical baseline information and a methodological framework to support evidence-based fishery management and conservation strategies in tropical multispecies fisheries under data-limited conditions.
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(This article belongs to the Section Biology and Ecology)
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Genetic Traceability of European Sea Bass (Dicentrarchus labrax) and Gilthead Seabream (Sparus aurata) for Technological Advancements in Breeding Management
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Silvia Tumminia, Stefano Reale, Carlotta Piazza, Gianluca Sarà, Mar Bosch-Belmar, Federica Bruno, Germano Castelli, Eugenia Oliveri, Fabrizio Vitale, Marco Tolone and Silvia Scibetta
Fishes 2026, 11(6), 338; https://doi.org/10.3390/fishes11060338 - 4 Jun 2026
Abstract
This study evaluated the genetic variability and traceability potential of farmed European sea bass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata) populations from a fish farm located in Petrosino (Marsala, Sicily) (FAO 37), using microsatellite markers. A total of
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This study evaluated the genetic variability and traceability potential of farmed European sea bass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata) populations from a fish farm located in Petrosino (Marsala, Sicily) (FAO 37), using microsatellite markers. A total of 64 D. labrax and 63 S. aurata individuals were genotyped with species-specific multiplex panels (9 and 10 loci, respectively). High levels of polymorphism were observed in both species, with an average of 12 alleles per locus in D. labrax and 9.1 alleles per locus in S. aurata. Mean observed heterozygosity (Ho) was 0.530 in D. labrax and 0.459 in S. aurata, while expected heterozygosity (He) reached 0.762 and 0.702, respectively. The fixation index (F) indicated moderate heterozygote deficiency in both populations (0.320 in D. labrax and 0.352 in S. aurata). Significant deviations from Hardy–Weinberg equilibrium were detected at most loci in both species, suggesting non-random mating, genetic drift, or population substructure. The probability of identity (PI) values across loci confirmed the high discriminatory power of the microsatellite panels, supporting their suitability for individual identification and genetic traceability applications in aquaculture. Overall, the results highlight that, despite substantial genetic variability, the observed heterozygote deficiency and deviations from equilibrium may reflect suboptimal breeding management practices. These findings underline the importance of implementing regular genetic monitoring and integrating molecular tools into broodstock management to maintain genetic diversity, reduce inbreeding, and support sustainable aquaculture production.
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(This article belongs to the Special Issue Genetics and Breeding of Fishes)
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CART Rule-Guided MaxEnt Model Construction and Its Application in Fishing Ground Prediction of Chub Mackerel in the Northwestern Pacific Ocean
by
Zuli Wu, Fenghua Tang, Yumei Wu, Shengmao Zhang, Fei Wang and Xuesen Cui
Fishes 2026, 11(6), 337; https://doi.org/10.3390/fishes11060337 - 4 Jun 2026
Abstract
Chub mackerel (Scomber japonicus) is a commercially important pelagic species in the northwest Pacific Ocean. Accurate identification of its fishing grounds can provide a more robust and targeted scientific basis for fishery management and ecological research. Based on fishing effort and
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Chub mackerel (Scomber japonicus) is a commercially important pelagic species in the northwest Pacific Ocean. Accurate identification of its fishing grounds can provide a more robust and targeted scientific basis for fishery management and ecological research. Based on fishing effort and five environmental factors (i.e., sea surface temperature [SST], chlorophyll-a concentration [CHL], SST gradient [GSST], sea surface height [SSH], and current speed), this study developed a Classification and Regression Tree (CART) rule-guided MaxEnt model. Specifically, rules generated by the CART model were first extracted and then incorporated as constrained feature functions into MaxEnt for model training. To select the optimal model scheme, four combinations of rule compositions and feature function outputs were designed, and model performance on the validation dataset was evaluated using ROC curves. Finally, the model was further verified with in situ environmental and fisheries data from April to November 2024. Results showed that the predicted fishing grounds were highly aligned with the actual monthly fishing grounds in 2024, and the predicted migration routes matched the movement trajectory of fishing vessels. The model also exhibited satisfactory performance, achieving an average AUC of 0.722 ± 0.033, a sensitivity of 0.604, a specificity of 0.834, and a negative predictive value (NPV) of 0.978. In conclusion, the CART rule-guided MaxEnt model, integrating the interpretability of CART and the predictive power of MaxEnt, effectively predicts the spatial distribution of chub mackerel fishing grounds in the northwest Pacific Ocean, providing technical support for fishery management and ecological research.
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(This article belongs to the Special Issue Modeling Approach for Fish Stock Assessment)
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Chitin Synthase Is Critical for Epidermal Chitin Deposition and Molting in the Swimming Crab Portunus trituberculatus
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Yaoyao Han, Xi Xie and Dongfa Zhu
Fishes 2026, 11(6), 336; https://doi.org/10.3390/fishes11060336 - 3 Jun 2026
Abstract
Chitin synthase (CHS) catalyzes the final polymerization step in chitin biosynthesis and is therefore central to cuticle formation in arthropods. In this study, a chitin synthase gene from the swimming crab Portunus trituberculatus (PtCHS) was identified and functionally characterized in relation
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Chitin synthase (CHS) catalyzes the final polymerization step in chitin biosynthesis and is therefore central to cuticle formation in arthropods. In this study, a chitin synthase gene from the swimming crab Portunus trituberculatus (PtCHS) was identified and functionally characterized in relation to epidermal formation and molting. The open reading frame of PtCHS was 4731 bp and encoded a predicted protein of 1576 amino acids belonging to glycosyltransferase family 2. Domain prediction revealed multiple transmembrane helices, a conserved chitin-synthase catalytic region, a coiled-coil region, and the diagnostic EDR, QRRRW, and SWGTRE motifs. Phylogenetic analysis assigned PtCHS to the class A/CHS1 chitin synthase lineage, and two alternative splice variants, designated PtCHS1a and PtCHS1b were detected. PtCHS transcripts were broadly distributed across examined tissues, with comparatively high abundance in the Y-organ, midgut, ovary, and epidermis. During the molting cycle, epidermal PtCHS expression increased during premolt, reached its highest level in postmolt stages, and declined during intermolt. During embryonic development, PtCHS expression remained relatively stable until late embryogenesis and then increased sharply before hatching. RNA interference-mediated knockdown of PtCHS reduced the expression of key chitin-biosynthesis genes, decreased epidermal chitin content, prolonged the molting interval, and was associated with molting failure and increased mortality. Conversely, unilateral eyestalk ablation induced PtCHS and molting-related genes, increased epidermal chitin content, shortened the molting interval, and promoted histological features consistent with enhanced extracellular matrix deposition and epidermal biosynthesis. These findings indicate that PtCHS is indispensable for epidermal chitin deposition and successful molting in P. trituberculatus, and provide a molecular basis for understanding molting regulation in economically important portunid crabs.
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(This article belongs to the Special Issue Advances in the Physiology of Aquatic Organisms)
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Exploratory Analysis of Fish Mortality in the Shatt al-Basrah Canal (Iraq, 2021): Environmental Drivers and Implications for Brackish Ecosystem Health
by
Murtada Naser, Amaal Yasser, Francisco Godinho and Patricio R. De los Ríos-Escalante
Fishes 2026, 11(6), 335; https://doi.org/10.3390/fishes11060335 - 2 Jun 2026
Abstract
The Shatt al-Basrah Canal, a brackish artificial waterway in southern Iraq, experienced a fish mortality event in August 2021, raising serious environmental and socioeconomic concerns. This study documents field observations, photographic evidence, and in situ water-quality measurements collected during the event to characterize
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The Shatt al-Basrah Canal, a brackish artificial waterway in southern Iraq, experienced a fish mortality event in August 2021, raising serious environmental and socioeconomic concerns. This study documents field observations, photographic evidence, and in situ water-quality measurements collected during the event to characterize environmental conditions associated with the mortality and situate them within the context of long-term ecosystem degradation in the region. The event coincided with critically low dissolved oxygen concentrations (1–2.5 mg L−1), elevated summer water temperatures (31.2–31.6 °C), high total ammonia nitrogen levels (1.88–2.2 mg L−1), and brackish salinity (17.4–23 ppt), reflecting strong anthropogenic influence and limited hydrological flushing. These stressors occurred in areas receiving untreated wastewater inputs and affected both native and non-native fish species tolerant of estuarine conditions. Comparison with documented fish-kill events from Kuwait Bay and other parts of the northern Arabian Gulf indicates similar environmental settings characterized by hypoxia, organic enrichment, and summer thermal stress. The 2021 mortality event suggests how acute ecological deterioration may arise in chronically degraded brackish systems and underscores the need for continuous water-quality monitoring, improved wastewater treatment, and proactive management to reduce the risk of recurrent fish kills in Iraq’s vulnerable aquatic ecosystems.
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(This article belongs to the Section Environment and Climate Change)
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A Model to Unify Toxicology and Aging Research: Turquoise Killifish, the Cultivated Vertebrate with the Shortest Lifespan
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Tainá Guillante, Brenda de Souza Leal, Maira Lopes da Silva, Raissa Borges Porto and Yuri Dornelles Zebral
Fishes 2026, 11(6), 334; https://doi.org/10.3390/fishes11060334 - 2 Jun 2026
Abstract
Environmental pollution has emerged as one of the most significant threats to human and ecosystem health, with growing evidence suggesting that chronic exposure to toxic substances may accelerate aging. The concept of gerontogens, toxic compounds capable of accelerating this biological process, has gained
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Environmental pollution has emerged as one of the most significant threats to human and ecosystem health, with growing evidence suggesting that chronic exposure to toxic substances may accelerate aging. The concept of gerontogens, toxic compounds capable of accelerating this biological process, has gained increasing attention in toxicological research, particularly in the context of global demographic shifts toward older populations. Current research on gerontogens relies heavily on invertebrate models with short lifespans, such as Caenorhabditis elegans, Drosophila melanogaster, and Saccharomyces cerevisiae, which are valuable for studying conserved mechanisms in aging pathways, but present significant limitations for translational accuracy to many aspects of vertebrate biology. Vertebrate models traditionally employed in toxicology, including mice and zebrafish, require substantially longer experimental timelines and higher financial investments, making lifetime exposure and aging assays particularly challenging. In this context, the turquoise killifish Nothobranchius furzeri emerges as a highly promising vertebrate model for aging toxicology research. Recognized as the shortest-lived vertebrate species maintained under laboratory conditions, N. furzeri reaches sexual maturity within 14 days and displays complete senescence by 4 months of age, at which point individuals are considered elderly, offering a decisive advantage over conventional vertebrate models. Furthermore, its capacity for embryonic diapause enables practical embryo storage, long-distance transport, and synchronized hatching, greatly facilitating experimental designs. Although N. furzeri is well established in gerontological research, with studies addressing hallmarks of aging such as telomere shortening, neurodegeneration, and cellular senescence, its application in ecotoxicology remains remarkably limited, with fewer than 10 published studies to date. This article argues that N. furzeri may represent a critical bridge between toxicology and aging research, offering an efficient and translationally relevant platform for investigating the effects of environmental contaminants on vertebrate aging. Current limitations of the model, such as lack of husbandry standardization, are also discussed. Expanding its use in this field holds considerable potential for advancing evidence-based strategies in public health and environmental conservation related to chronic exposure to contaminants.
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(This article belongs to the Special Issue Aquatic Ecotoxicology: Field and Laboratory Approaches)
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Reduced Glutathione Supplementation Enhances Metamorphosis and Disease Resistance in Larvae of Pacific Oyster Crassostrea gigas
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Xuesong Li, Junlei Cheng, Jiadi Wang, Pan Luo, Chunmei Xiong, Weilin Wang, Lingling Wang and Linsheng Song
Fishes 2026, 11(6), 333; https://doi.org/10.3390/fishes11060333 - 2 Jun 2026
Abstract
As an important aquaculture bivalve, the Pacific oyster (Crassostrea gigas) undergoes a metamorphosis process during its embryonic development. The mortality rate of the eye-spot larva during the metamorphosis and settlement stage is relatively high, which urgently needs to be solved. Glutathione
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As an important aquaculture bivalve, the Pacific oyster (Crassostrea gigas) undergoes a metamorphosis process during its embryonic development. The mortality rate of the eye-spot larva during the metamorphosis and settlement stage is relatively high, which urgently needs to be solved. Glutathione (GSH), as a key antioxidant and immune regulator in organisms, plays an important role in the growth, development, and immune defense of marine invertebrates. Analysis of oyster transcriptome data revealed that the expression of key enzyme-producing GSH, Glutathione S-transferase Kappa 1, reached the highest level at the pediveliger larvae (the stage just before eye-spot larvae), suggesting its important role in the larval settlement process. This study investigated the effects of reduced glutathione supplementation in pediveliger larvae on the settlement metamorphosis and immune capacity of eye-spot larvae. The results showed that high concentrations of glutathione (100 μmol/L, 500 μmol/L) significantly reduced the larval eye-spot rate and settlement rate, with larvae in the 500 μmol/L group nearly all dead after 48 h. Meanwhile, low-concentration GSH (7 μmol/L) could significantly increase the settlement rate of larvae, which was 1.17 times (p < 0.05) that of the control group. When the larvae developed to 1-month-old eye-spot larvae, the survival rate of larvae in the low GSH group significantly increased (38.42 ± 15.98%) after Vibrio splendidus stimulation, while they were almost all dead in the control group. Low GSH could also significantly increase lysozyme LZM activity (by 1.39 times, p < 0.05) and Cu/Zn-SOD activity (by 1.15 times, p < 0.05). Gene expression analysis found that low GSH promoted expressions of larval settlement and metamorphosis-related genes, including ecdysone receptor, P450, and calmodulin. Treatment with low GSH also enhanced the expressions of immune genes of SOD, CAT, and LZM. In summary, a low glutathione supplement can promote the settlement process of oyster eye-spot larvae and enhance disease resistance. These findings reveal the role of glutathione in the metamorphosis and settlement of oyster larvae, providing a scientific basis for optimizing techniques for oyster seedling cultivation.
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(This article belongs to the Special Issue Advances in the Diagnosis and Prevention of Aquatic Animal Diseases in Aquaculture)
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Dose-Dependent Responses of Tissue Integrity, Immune Homeostasis, and Gut Microbiota in Golden Pompano Trachinotus ovatus (Linnaeus 1758) Following Cryptocaryon irritans Infection
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Jingbo Hu, Zhenjun Zhuang, Nanxiong Chen, Jiaojiao Jin, Zijie Wu, Yongkui Liu, Qi Ju and Sedong Li
Fishes 2026, 11(6), 332; https://doi.org/10.3390/fishes11060332 - 2 Jun 2026
Abstract
Cryptocaryon irritans, a ciliated protozoan parasite, is the causative agent of marine white spot disease and results in significant economic losses in mariculture. In this study, golden pompano (Trachinotus ovatus) were challenged with C. irritans at different infection doses (2000,
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Cryptocaryon irritans, a ciliated protozoan parasite, is the causative agent of marine white spot disease and results in significant economic losses in mariculture. In this study, golden pompano (Trachinotus ovatus) were challenged with C. irritans at different infection doses (2000, 4000, and 8000 theronts per fish) for 48 h to evaluate histopathological, oxidative stress, immune, and intestinal microbiota responses. Histopathological analysis revealed pronounced tissue damage in the gills, skin, intestine, and liver, with severity positively correlated with infection intensity. Typical lesions included intestinal mucosal damage, hepatic vacuolation, gill epithelial hyperplasia, and skin epidermal thickening. Hepatic malondialdehyde (MDA) levels increased significantly with infection intensity, while superoxide dismutase (SOD) and glutathione peroxidase (GSH-Px) showed non-linear activation patterns. Catalase (CAT), alkaline phosphatase (AKP), and acid phosphatase (ACP) activities were consistently suppressed. Immune-related gene expression exhibited tissue-specific regulation, with myd88 downregulated in gills but upregulated in skin, while pro-inflammatory cytokines (il-1β and il-8) and il-10 were significantly elevated. Infection also altered intestinal microbiota composition, reducing beneficial bacteria (e.g., Photobacterium) and increasing opportunistic pathogens such as Vibrio. These findings provide insights into host–parasite–microbiota interactions in T. ovatus and improve our understanding of the physiological and immune responses of fish to C. irritans infection.
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(This article belongs to the Special Issue Recent Studies on Pathogen-Host Interaction of Aquatic Animals)
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Encapsulated Amazonian Microalgae Reduce Ammonia and Improve Survival of Female Poecilia reticulata During Simulated Transport
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Marianela Cobos, Marcos J. Guerra, Leonardo J. Pizarro, Gladys R. Panduro, Danitza E. Ampudia, Freddy O. Espinoza-Campos, Carlos G. Castro and Juan C. Castro
Fishes 2026, 11(6), 331; https://doi.org/10.3390/fishes11060331 - 1 Jun 2026
Abstract
The accumulation of un-ionized ammonia (NH3) during the transport of live ornamental fish poses a critical threat to animal welfare and post-transport survival. This study evaluated the efficacy of calcium alginate-encapsulated native Amazonian microalgae, Ankistrodesmus sp., Chlorella sp., Scenedesmus sp., and
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The accumulation of un-ionized ammonia (NH3) during the transport of live ornamental fish poses a critical threat to animal welfare and post-transport survival. This study evaluated the efficacy of calcium alginate-encapsulated native Amazonian microalgae, Ankistrodesmus sp., Chlorella sp., Scenedesmus sp., and Synechococcus sp., for NH3 bioremediation during a 15-day simulated transport of female Poecilia reticulata. Biometric endpoints were selected using a four-criterion framework, identifying specific growth rate by weight (SGRW), specific growth rate by length (SGRL), and Fulton’s condition factor (K) as essential non-redundant parameters. Time-weighted average (TWA) NH3 served as the primary dose variable for four-parameter log-logistic modeling fitted to biological replicate means (n = 15). Ankistrodesmus sp. and Scenedesmus sp. maintained 97.8% survival and restricted TWA NH3 to 0.036 and 0.047 mg/L, respectively, whereas the empty capsule control reached 6.7% survival and 0.150 mg/L TWA NH3. Kruskal–Wallis tests on biological replicate means confirmed significant treatment effects on all biometric endpoints (SGRW: H(4) = 13.50, ε2 = 0.950; SGRL: H(4) = 13.50, ε2 = 0.95; p < 0.01). Chronic EC50 values of 0.10505 mg/L NH3 (SGRW; Adj-R2 = 0.828) and 0.09967 mg/L NH3 (SGRL; Adj-R2 = 0.812) were established, representing approximately 7.8% and 7.4% of the female-specific acute LC50 (1.34 mg/L NH3), respectively, yielding chronic-to-acute ratios of approximately 13 for both growth endpoints and confirming that sublethal growth impairment precedes lethality. Partial disruption of the calcium alginate capsule matrix was observed from day 5 onward; the relative contributions of encapsulated and free-cell fractions were not quantified. Under the experimental conditions tested, 15-day simulated transport of female P. reticulata under controlled illumination and without feeding, calcium alginate-encapsulated Ankistrodesmus sp. and Scenedesmus sp. treatments represent effective, scalable, and residue-free alternatives to chemical ammonium neutralization for comparable ornamental fish transport scenarios; extension to dark commercial air transport or other species requires further experimental validation.
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(This article belongs to the Special Issue Welfare and Stressor in Aquaculture: Mechanisms, Management, and Sustainable Solutions)
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Cold Stress and Molecular Adaptations in Aquatic Organisms: A Comparative Review of Fish, Crustaceans, and Mollusks
by
Lan Li, Yihong Mu, Chunrong Zuo, Minfang Zhao, Zhiqiu Huang, Wenli Zhang, Meihong Qiu and Yi Huang
Fishes 2026, 11(6), 330; https://doi.org/10.3390/fishes11060330 - 1 Jun 2026
Abstract
Cold stress poses a significant challenge to aquatic organisms, affecting their survival, growth, and metabolic processes. This review explores the molecular mechanisms by which fish, crustaceans, and mollusks respond to cold stress, highlighting the shared and species-specific pathways that facilitate adaptation. Common responses
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Cold stress poses a significant challenge to aquatic organisms, affecting their survival, growth, and metabolic processes. This review explores the molecular mechanisms by which fish, crustaceans, and mollusks respond to cold stress, highlighting the shared and species-specific pathways that facilitate adaptation. Common responses to cold stress include modulation of energy metabolism, regulation of oxidative stress, immune responses, and maintenance of proteostasis. In particular, the activation of the adenosine 5′-monophosphate-activated protein kinase (AMPK) and mechanistic target of rapamycin (mTOR) pathways plays a critical role in regulating energy balance and autophagy in response to low temperatures. Furthermore, we examine the specific adaptive mechanisms employed by different groups of aquatic organisms. Fish utilize pathways such as peroxisome proliferator-activated receptor alpha/peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PPAR/PGC-1α) and fatty acid oxidation to optimize energy utilization and improve cold tolerance. Crustaceans rely on crustacean hyperglycemic hormone (CHH) signaling and AMPK pathway activation, while mollusks employ metabolic suppression and glycogen storage to survive cold exposure. Moreover, the regulation of autophagy and apoptosis, mediated by p53 and cyclin-dependent kinase 1 (Cdk1), ensures the survival of healthy cells under prolonged cold stress, with autophagy maintaining energy homeostasis and apoptosis eliminating damaged cells. This review also discusses the role of molecular chaperones like heat shock protein 70 (HSP70) and the ubiquitin-proteasome system (UPS) in protein homeostasis, highlighting their importance to protect cells under cold stress. The combined action of these molecular pathways allows aquatic organisms to cope with and adapt to cold environments, ensuring cellular integrity and enhancing survival. Future research should focus on integrating molecular, physiological, and ecological approaches to better understand cold tolerance mechanisms and improve aquaculture practices under climate change scenarios.
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(This article belongs to the Special Issue Impacts of Environmental Stressors on Aquatic Animals: Mechanisms, Risk Assessment and Mitigation Strategies)
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Life History Choices of Fishes in Response to Diverse Environments
by
Skúli Skúlason
Fishes 2026, 11(6), 329; https://doi.org/10.3390/fishes11060329 - 30 May 2026
Abstract
Fishes represent an extremely diverse group of organisms, both within and among species. This diversity reflects their association with the environment and resources like habitat and food. Here, examples from diverse life histories of fishes are used to illustrate the significance of the
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Fishes represent an extremely diverse group of organisms, both within and among species. This diversity reflects their association with the environment and resources like habitat and food. Here, examples from diverse life histories of fishes are used to illustrate the significance of the patterns and processes involved in the ongoing dynamic relationships organisms have with their environment. This exploration relates directly to an ongoing paradigm shift in evolutionary biology, where organismal development is at the core. This paper applies knowledge of phenotypic plasticity and transgenerational plasticity in fishes in concert with biosemiotics to explain this kind of approach. It is concluded that the role of signals and cues involved in organismal interpretation and responses to changing conditions play a key role in understanding how new opportunities for development and evolution become realised through complex pathways influencing phenotypic variation within and across generations. Because of their diversity and responsiveness, especially in developmental and life history strategies, fishes are excellent subjects to study this further both theoretically and empirically.
Full article
(This article belongs to the Special Issue Habitat as a Template for Life Histories of Fish)
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Open AccessReview
Content of Short-Lived Radionuclides (125Sb, 131I, 141Ce, and 144Ce) in Fish
by
Nataliia E. Zarubina, Vladislav Semak and Liliia P. Ponomarenko
Fishes 2026, 11(6), 328; https://doi.org/10.3390/fishes11060328 - 30 May 2026
Abstract
This review is part of a series of studies on short-lived radionuclide accumulation in aquatic organisms following nuclear weapons testing, routine facility discharges, and accidental releases. It examines the pathways of uptake, accumulation, and internal redistribution of 125Sb, 131I, 141Ce,
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This review is part of a series of studies on short-lived radionuclide accumulation in aquatic organisms following nuclear weapons testing, routine facility discharges, and accidental releases. It examines the pathways of uptake, accumulation, and internal redistribution of 125Sb, 131I, 141Ce, and 144Ce in fish representing different ecological groups. The analysis combines published literature data with our original findings obtained from studies conducted in the cooling pond of the Chornobyl Nuclear Power Plant and the Kaniv Reservoir during the post-accident period. It has been established that radionuclide accumulation is governed by their physicochemical properties, environmental speciation, and the trophic characteristics of fish. 125Sb demonstrates high bioavailability and accumulates in internal organs, gills, roe, and muscle depending on its chemical form in the aquatic environment. 131I is characterized by high solubility, rapid incorporation into biological processes, and transient retention in tissues. 141Ce and 144Ce exhibit low mobility, strong association with particulate matter, and preferential accumulation in the gastrointestinal tract, external, and mineralized tissues. At the same time, the presence of 144Ce in the muscle tissue of carnivores and piscivores suggests possible trophic transfer and does not exclude potential manifestations of limited biomagnification of this radionuclide under conditions of elevated environmental contamination. It has been determined that the ratio of 125Sb to 144Ce can be used to identify contamination sources: their co-occurrence is interpreted as evidence of fuel particle input, explaining their predominant localization in the gastrointestinal tract and, to a lesser extent, in external tissues. Conversely, their separate detection reflects differences in mobility and bioavailability. It has been shown that the principal pathways for the uptake of the investigated radionuclides by fish are particle ingestion and absorption from the dissolved phase; thus, trophic dilution predominates over biomagnification, although trophic transfer of 144Ce cannot be excluded.
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(This article belongs to the Section Environment and Climate Change)
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Open AccessArticle
From Peril to Poise: An Organic Acid Strategy to Attenuate Pseudomonas fluorescens Virulence in Shrimp and Fish Infection Models
by
Iulia Bundurus, Igori Balta, Ioan Pet, Lavinia Stef, Stefan Kalinović, Ana-Maria Imbrea, Diana Marcu, Claudia Loredana Crista, Sorin Morariu and Nicolae Corcionivoschi
Fishes 2026, 11(6), 327; https://doi.org/10.3390/fishes11060327 - 30 May 2026
Abstract
This study evaluated the anti-virulence effect of AuraAqua (Aq), a natural mixture of organic acids, against Pseudomonas. fluorescens. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of Aq against P. fluorescens were 0.5% and 1% (v/v),
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This study evaluated the anti-virulence effect of AuraAqua (Aq), a natural mixture of organic acids, against Pseudomonas. fluorescens. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of Aq against P. fluorescens were 0.5% and 1% (v/v), respectively. Growth curve analysis confirmed concentration-dependent inhibition of planktonic growth, while sub-inhibitory Aq (0.25%; 1/2 MIC) significantly reduced biofilm formation. Rhodamine-based assays revealed membrane depolarisation at both 0.25% and 0.5% Aq, with decreased intracellular protein levels, indicating impaired membrane integrity under the tested conditions. In fibronectin adherence assays, the presence of Aq during bacterial contact markedly reduced adherence, whereas short pre-treatment alone produced limited, non-persistent effects, suggesting that continuous exposure is required to interfere with host matrix binding. Supernatants and lysates from Aq-exposed P. fluorescens induced lower extracellular protease activity in a concentration-dependent manner and mitigated P. fluorescens-induced cytotoxicity in primary shrimp (SGP) and tilapia (TGP) gut cells, as measured by lactate dehydrogenase (LDH) release after exposure to bacterial supernatants and lysates. Aq treatment was associated with decreased P. fluorescens internalisation into SGP and TGP cells. Collectively, these data show that Aq exerts multi-target inhibitory and virulence-attenuating effects on P. fluorescens, supporting its potential use in aquaculture environments.
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(This article belongs to the Special Issue Effects of Dietary Ingredients on Fish Nutrition and Health)
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Open AccessArticle
Optimization of MS-222 Concentration for Short-Term Handling of Juvenile Pseudopungtungia nigra Based on Induction and Recovery Responses
by
Kang-Rae Kim and In-Chul Bang
Fishes 2026, 11(6), 326; https://doi.org/10.3390/fishes11060326 - 29 May 2026
Abstract
The black shinner Pseudopungtungia nigra is an endangered freshwater fish endemic to Korea, and standardized anesthetic protocols are needed for conservation-related hatchery handling. This study evaluated the effects of water temperature and MS-222 concentration on anesthetic induction and recovery responses in hatchery-reared juvenile
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The black shinner Pseudopungtungia nigra is an endangered freshwater fish endemic to Korea, and standardized anesthetic protocols are needed for conservation-related hatchery handling. This study evaluated the effects of water temperature and MS-222 concentration on anesthetic induction and recovery responses in hatchery-reared juvenile P. nigra of approximately 3 cm total length. Juveniles were exposed to four MS-222 concentrations, 80, 100, 150, and 200 mg L−1, at three water temperatures, 21, 24, and 27 °C. Induction time, recovery time, and recovery success within 600 s were assessed using behavioral endpoints. The 80 mg L−1 treatment induced anesthesia within 600 s only at 27 °C, whereas fish exposed at 21 and 24 °C failed to reach the defined anesthetic stage within 600 s; therefore, this treatment was treated as a low-concentration induction-failure condition. In the main 3 × 3 factorial analysis using 100, 150, and 200 mg L−1, induction time decreased significantly with increasing MS-222 concentration and water temperature, with significant effects of temperature, concentration, and their interaction. In contrast, recovery time increased with increasing MS-222 concentration, indicating a clear trade-off between rapid induction and recovery stability. Although 200 mg L−1 produced the shortest induction times, it also resulted in the longest recovery times and delayed recovery at 24 and 27 °C. The 100 mg L−1 treatment showed stable recovery but required prolonged induction, especially at lower temperatures. Overall, 150 mg L−1 provided the most balanced behavioral response by substantially reducing induction time compared with 100 mg L−1 while avoiding the greater recovery burden observed at 200 mg L−1. These findings suggest that 150 mg L−1 MS-222 is a practical concentration for routine short-term handling of hatchery-reared juvenile P. nigra under the tested temperature and handling conditions. However, this recommendation should be interpreted as a behavioral handling guideline because physiological stress responses and long-term post-anesthetic outcomes were not evaluated.
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(This article belongs to the Special Issue Fish Health and Welfare in Aquaculture and Research Settings)
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Open AccessCommunication
Susceptibility and Clinicopathological Findings in Three Amazonian Fish Species Experimentally Infected with Lactococcus spp.: A Preliminary Study
by
Angélica Emanuely Costa do Rosário, Francisco Yan Tavares Reis, Angelo Carlo Chaparro Barbanti, Érik José Carvalho da Costa, Cynthia Rafaela Monteiro da Silva Maia, Suzana Kotzent, Sóstenes Apolo Correia Marcelino, Felipe Pierezan, Gustavo Moraes Ramos Valladão, Ronald Kennedy Luz, Henrique César Pereira Figueiredo, Silvia Umeda Gallani and Guilherme Campos Tavares
Fishes 2026, 11(6), 325; https://doi.org/10.3390/fishes11060325 - 29 May 2026
Abstract
Bacterial diseases cause significant losses in the aquaculture of Amazonian fishes (Arapaima gigas, Brycon amazonicus, and Colossoma macropomum). Lactococcosis-causing bacteria (LCB) have emerged as important pathogens in global aquaculture, and although they have already been isolated from these fish
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Bacterial diseases cause significant losses in the aquaculture of Amazonian fishes (Arapaima gigas, Brycon amazonicus, and Colossoma macropomum). Lactococcosis-causing bacteria (LCB) have emerged as important pathogens in global aquaculture, and although they have already been isolated from these fish species, their pathogenic role remains unconfirmed. This study evaluated the susceptibility of three Amazonian fish species to Lactococcus spp. through experimental infection and performed a detailed examination of the associated pathological damage. Lactococcus formosensis, L. garvieae, and L. petauri strains were used to intracoelomically infect juvenile Amazonian fish. Following infection, the fish were monitored for 15 days to evaluate clinical signs and mortality. Clinical signs were observed in the L. garvieae-challenged A. gigas, with one fish dying at five days post-infection. The remaining experimental animals, regardless of fish species, survived the challenge. All mortalities and surviving fish at the end of the trial underwent bacteriological and histopathological examinations. Bacteriological examination confirmed bacterial re-isolation from asymptomatic animals in the L. garvieae-challenged A. gigas (2/7) and L. formosensis-challenged C. macropomum (3/7) groups using MALDI-TOF MS and multiplex qPCR analysis. No bacterial growth or histological alterations were observed in the control groups or in the groups infected with L. petauri. Microscopic examination revealed L. garvieae-induced fibrinoid-necrotic hepatitis, lymphohistiocytic myocarditis, and myositis in diseased or asymptomatic A. gigas, while L. formosensis caused lymphohistiocytic pericarditis in surviving C. macropomum. These findings provide preliminary evidence suggestive of susceptibility of A. gigas and C. macropomum to infection by L. garvieae and L. formosensis, respectively, highlighting their potential to act as asymptomatic carriers. Furthermore, the histopathological findings were suggestive of species-associated lesion patterns of piscine lactococcosis in Amazonian fish, rather than indicative of high mortality.
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(This article belongs to the Special Issue Combating Infectious Diseases in Aquaculture)
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Open AccessArticle
Spatiotemporal Analysis of Light-Fishing Vessel Operations in the Arabian Sea Based on Nighttime Light Remote Sensing
by
Tianfei Cheng, Shenglong Yang, Fei Wang, Wanbing Ren, Dongxu Yang and Shengmao Zhang
Fishes 2026, 11(6), 324; https://doi.org/10.3390/fishes11060324 - 28 May 2026
Abstract
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A comprehensive understanding of the spatial dynamics and operational characteristics of fishing activities in the Arabian Sea is critical for effective marine management and regional resource conservation. Based on VIIRS/DNB nighttime light imagery from 2017 to 2022 and the YOLOv11 model, this study
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A comprehensive understanding of the spatial dynamics and operational characteristics of fishing activities in the Arabian Sea is critical for effective marine management and regional resource conservation. Based on VIIRS/DNB nighttime light imagery from 2017 to 2022 and the YOLOv11 model, this study presents an applied observational pipeline for the spatial extraction of fishing vessel positions. Spatial statistical methods were employed to analyze the operational patterns of light-fishing fleets, and habitat niches were identified by integrating marine environmental data. The results indicate that: (1) The YOLOv11 model achieved a precision (P) of 0.966, a recall (R) of 0.954, and a mean average precision (mAP) of 0.969. Under clear-sky and thin-cloud conditions, it demonstrated superior detection accuracy compared to existing VBD (VIIRS Boat Detection) products. (2) Through Kernel Density Hotspot Analysis (KDHSA), the primary spatial distribution of the light-fishing fleet was delineated. Fishing Operation Areas (FOAs) exhibited a pronounced seasonal “clustering–diffusion–re-clustering” pattern. The Center of Effort (CoE) generally followed a counter-clockwise migration trajectory, though a clockwise shift was observed during the 2019–2020 fishing season. (3) Random Forest analysis identified dissolved oxygen at 200 m (DO200), sea surface height (SSH), and temperature at 200 m (T200) as the primary predictive environmental features associated with vessel distribution. The core spatial ranges associated with high vessel density were 9.5–14.9 mmol⋅m−3 for DO200, 0.24–0.36 m for SSH, and 17.3–18.0 °C for T200. Notably, the statistical contribution of subsurface factors significantly exceeded that of sea surface temperature (SST). Future research should integrate ship position data with fishery biological data to further explore the drivers of FOA variations. This study provides a scientific basis for the sustainable management and rational development of marine resources in the Northwest Indian Ocean.
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Open AccessArticle
Observation of Hematocytes in Peripheral Blood and Hematopoiesis in Monopterus albus
by
Xintong Nie, Anran Zou, Weihong Zhao, Tian Tian, Shuhao Wang, Shenghe Zhou, Jiangtao Ou and Chuanjie Qin
Fishes 2026, 11(6), 323; https://doi.org/10.3390/fishes11060323 - 28 May 2026
Abstract
To elucidate hematopoietic ontogeny in Monopterus albus, systematic cytological analysis was performed using Wright–Giemsa-stained peripheral blood smears and hematopoietic organ imprints. Peripheral blood smears revealed five major cell types: erythrocytes (60.05 ± 8.08%), lymphocytes (13.50 ± 4.27%), thrombocytes (8.95 ± 3.47%), neutrophils
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To elucidate hematopoietic ontogeny in Monopterus albus, systematic cytological analysis was performed using Wright–Giemsa-stained peripheral blood smears and hematopoietic organ imprints. Peripheral blood smears revealed five major cell types: erythrocytes (60.05 ± 8.08%), lymphocytes (13.50 ± 4.27%), thrombocytes (8.95 ± 3.47%), neutrophils (6.40 ± 2.17%), and monocytes (5.32 ± 1.63%), with occasional basophils and no eosinophils. Microscopic analysis revealed that M. albus hematopoiesis progresses through three distinct developmental phases—primitive, juvenile (with granulocytic series exhibiting promyelocyte/myelocyte/metamyelocyte substages), and mature stages—across erythroid, monocytic, lymphoid, and granulocytic lineages. The head kidney served as the primary hematopoietic organ, containing pan-stage cells and supporting all lineages, whereas the spleen lacked myeloblasts but participated in non-granulocytic hematopoiesis, and the liver was restricted to juvenile-stage erythrocyte, lymphocyte, and neutrophil development. Notably, erythrocytes in the peripheral blood with elongated nucleus were observed in the peripheral blood.
Full article
(This article belongs to the Special Issue Adaptive Fisheries Management in East Asia: Navigating Climate Change, POPs, and Microplastics)
Open AccessArticle
Effect of Euphausia superba Powder Enrichment on Fatty Acid, and Amino Acid Composition and Astaxanthin Content of Moina mongolica Daddy
by
Jianxue Lu, Bingcong Ye, Pengcheng Gao, Zongli Yao, Na Ying, Huanhuan Wang and Yanqing Huang
Fishes 2026, 11(6), 322; https://doi.org/10.3390/fishes11060322 - 28 May 2026
Abstract
To evaluate the nutritional enrichment effects of Euphausia superba meal on Moina mongolica Daday, different concentrations of krill meal (26, 39, 52, and 65 mg·L−1) were applied as enrichment supplements, with non-enriched M. mongolica serving as the control. After a 6
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To evaluate the nutritional enrichment effects of Euphausia superba meal on Moina mongolica Daday, different concentrations of krill meal (26, 39, 52, and 65 mg·L−1) were applied as enrichment supplements, with non-enriched M. mongolica serving as the control. After a 6 h enrichment period, the compositions and contents of amino acids and fatty acids in M. mongolica were analyzed, and the astaxanthin content was simultaneously determined. The results showed that, compared with the control group cultured on a mixed diet of photosynthetic bacteria, yeast, and Nannochloropsis, enrichment with Antarctic krill meal at appropriate concentrations (26–39 mg·L−1) markedly altered the fatty acid profile of M. mongolica. In particular, the levels of highly unsaturated fatty acids (HUFAs), including ∑ω6-PUFA and ∑ω3-PUFA, were significantly enhanced, with a pronounced increase in eicosapentaenoic acid (EPA). Furthermore, the total amino acid content, as well as the contents of six flavor-enhancing amino acids and ten essential amino acids for fish, were significantly higher in the enriched groups than in the control (p < 0.05). However, excessive supplementation of krill meal inhibited the growth of M. mongolica, suggesting a concentration-dependent effect. In addition, enrichment with whole Antarctic krill meal for 6 h did not significantly increase the astaxanthin content in M. mongolica, which may be related to the limited assimilation efficiency within the short enrichment duration. Overall, enrichment of M. mongolica with Euphausia superba meal at appropriate concentrations (26–39 mg·L−1) effectively improves its fatty acid and amino acid composition, thereby enhancing its nutritional value as live feed for aquaculture larvae.
Full article
(This article belongs to the Special Issue Aquaculture Feeds and Feed Additives—Toward Precise and Sustainable Nutrition)
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Effects of Coated and Crystaline Methionine and Lysine Supplementation on Growth, Body Composition, Digestive Enzyme Activity, Antioxidant Status, Serum Biochemistry, and Gene Expression in Common Carp (Cyprinus carpio)
by
Meiyan Zhang, Xing Yang, Rendong Qian, Feng Zhao, Zhenxin Zhao, Baodi Shang, Xianping Shao and Jianhua Zhao
Fishes 2026, 11(6), 321; https://doi.org/10.3390/fishes11060321 - 28 May 2026
Abstract
An eight-week feeding trial was conducted to investigate methionine and lysine supplementation on the growth performance, body composition, antioxidant index and protein synthesis-related gene expression of the FFCR No. 2 strain common carp (Cyprinus carpio). The experiment included five groups: the
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An eight-week feeding trial was conducted to investigate methionine and lysine supplementation on the growth performance, body composition, antioxidant index and protein synthesis-related gene expression of the FFCR No. 2 strain common carp (Cyprinus carpio). The experiment included five groups: the CON group (basal diet), CM group (supplemented with 0.6% crystalline methionine), CML group (supplemented with 0.6% crystalline methionine and 0.3% crystalline lysine), HM group (supplemented with 0.6% coated methionine), and HML group (supplemented with 0.6% coated methionine and 0.3% coated lysine). The results showed that the WG (weight gain), SGR (specific growth rate) and CF (condition factor) of the HML group were significantly increased (p < 0.05), and the activities of amylase, lipase, and protease in the intestine of those belonging to the HML group were significantly higher than those in the CON group (p < 0.05). The whole-body crude lipid, SOD (superoxide dismutase), GOT (glutamic oxaloacetic transaminase) activity, and BUN (urea nitrogen) levels in serum were reduced significantly in the HM and HML groups than in the CON group (p < 0.05). Additionally, in the HML group the gene expression levels of IGF-1 (insulin-like growth factor-1), IGFBP (insulin-like growth factor binding protein), 4EBP1(recombinant eukaryotic translation initiation factor 4E binding protein 1), and S6K1 (ribosomal protein s6 kinase 1) in the muscle were significantly higher than those in the CON group. In summary, supplementing coated methionine and lysine improved amino acid utilization, enhanced growth performance, and upregulated the expression of genes associated with growth and protein synthesis.
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(This article belongs to the Special Issue Effect of Dietary Supplementation on the Growth and Immunity of Fish and Shellfish—3rd Edition)
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