Advances in Antibiotic and Drug-Resistance Mechanisms, 2nd Edition

A special issue of Microorganisms (ISSN 2076-2607). This special issue belongs to the section "Antimicrobial Agents and Resistance".

Deadline for manuscript submissions: 15 August 2024 | Viewed by 1643

Special Issue Editors


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Guest Editor
School of Medicine, University Paris Saclay, Hopital de Bicêtre, Service de Bactériologie, Bâtiment Broca, 3ème étage, 78 rue du Gal Leclerc, 94275 Le Kremlin-Bicêtre, France
Interests: genetics of antibiotic resistance; gram negatives; ß-lactamases; carbapenemases; diagnostics (biochemical, phenotypical, molecular) and diagnostics of antibiotics resistance genes; NGS; transcriptomics; microbiota
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
School of Medicine, University Paris Saclay, Hopital de Bicêtre, Service de Bactériologie, Bâtiment Broca, 3ème étage, 78 rue du Gal Leclerc, 94275 Le Kremlin-Bicêtre, France
Interests: AMR; enterobacterales; gram negative; kinetics; beta-lactamase; diagnostics; genetics
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

The discovery of antibiotics has revolutionized medicine by enabling the efficient treatment of many life-threatening bacterial infections. Antimicrobial resistance (AMR) is today universally recognised as a global threat because of the rapid emergence and dissemination of resistant bacteria and genes among humans, animals, and the environment on the global scale and represents a heavy burden for healthcare systems all over the world. The currently estimated global AMR-related mortality rates are substantial, and this is an “ecosystem-related” problem threatening the interplay of human–animal and environmental health (“One Health”). Resistant bacteria arising in one geographical area can spread via cross-reservoir transmission to other areas worldwide, either by human-to-human transmission and/or exposure through the food chain and environmental contaminations. In humans, the drivers of antibiotic resistance are complex and multi-sectoral, including food and companion animals, fish, vegetables, and the environmental resistance gene pool.

As the incidence of MDR bacterial infections for which few effective treatments are available increases, novel therapies are needed to curb this serious problem. The recent commercialization of novel antibiotics resulted in more or less the rapid emergence of bacterial isolates that either became resistant during therapy or were already resistant to these novel molecules. The aim of this Special Issue is to present the state-of-the-art data on the last-resort antibiotics, either repurposed or novel antibiotics used in human therapy and their associated resistance mechanisms, with special emphasis on the following:

  • The presence of antibiotics in the different compartments (human, animal, and environment).
  • The One Health spectrum dynamics of transmission and the prevalence of community-acquired resistance in humans, animals, and the environment.
  • Studies on the effects of antimicrobial agent exposure on the healthy human commensal microbiota and their negative consequences in terms of both the colonization with antibiotic resistant bacteria and the bacterial population imbalance and dysfunctions in the susceptible bacterial microbiota.
  • The structure–function analysis of AMR gene products.
  • Companion diagnostic tools for the safe use of novel therapies.
  • Epidemiology.
  • Genetic basis at the origin of AMR gene dispersion.
  • The origin of the AMR genes.
  • Novel antibiotics under development and in clinical use.
  • The novel inhibitors of beta-lactamases and their combinations.

Dr. Thierry Naas
Dr. Saoussen Oueslati
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Microorganisms is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • AMR
  • genetics
  • novel antibiotics
  • resistance
  • mechanisms
  • diagnostics
  • One Health
  • in vitro
  • in vivo
  • selection

Published Papers (2 papers)

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Research

19 pages, 632 KiB  
Article
Prevalence, Molecular Detection, and Antimicrobial Resistance of Salmonella Isolates from Poultry Farms across Central Ethiopia: A Cross-Sectional Study in Urban and Peri-Urban Areas
by Hika Waktole, Yonas Ayele, Yamlaksira Ayalkibet, Tsedale Teshome, Tsedal Muluneh, Sisay Ayane, Bizunesh Mideksa Borena, Takele Abayneh, Getaw Deresse, Zerihun Asefa, Tadesse Eguale, Kebede Amenu, Hagos Ashenafi and Gunther Antonissen
Microorganisms 2024, 12(4), 767; https://doi.org/10.3390/microorganisms12040767 - 10 Apr 2024
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Abstract
A cross-sectional study was conducted to assess the prevalence, molecular detection, and antimicrobial resistance of Salmonella isolates within 162 poultry farms in selected urban and peri-urban areas of central Ethiopia. A total of 1515 samples, including cloacal swabs (n = 763), fresh fecal [...] Read more.
A cross-sectional study was conducted to assess the prevalence, molecular detection, and antimicrobial resistance of Salmonella isolates within 162 poultry farms in selected urban and peri-urban areas of central Ethiopia. A total of 1515 samples, including cloacal swabs (n = 763), fresh fecal droppings (n = 188), litter (n = 188), feed (n = 188), and water (n = 188), were bacteriologically tested. The molecular detection of some culture-positive isolates was performed via polymerase chain reaction (PCR) by targeting spy and sdfl genes for Salmonella Typhimurium and Salmonella Enteritidis, respectively. Risk factors for the occurrence of the bacterial isolates were assessed. Antimicrobial susceptibility testing of PCR-confirmed Salmonella isolates was conducted using 12 antibiotics. In this study, it was observed that 50.6% of the farms were positive for Salmonella. The overall sample-level prevalence of Salmonella was 14.4%. Among the analyzed risk factors, the type of production, breed, and sample type demonstrated a statistically significant association (p < 0.05) with the bacteriological prevalence of Salmonella. The PCR test disclosed that 45.5% (15/33) and 23.3% (10/43) of the isolates were positive for genes of Salmonella Typhimurium and Salmonella Enteritidis, respectively. The antimicrobial susceptibility test disclosed multi-drug resistance to ten of the tested antibiotics that belong to different classes. Substantial isolation of Salmonella Typhimurium and Salmonella Enteritidis in poultry and on poultry farms, along with the existence of multi-drug resistant isolates, poses an alarming risk of zoonotic and food safety issues. Hence, routine flock testing, farm surveillance, biosecurity intervention, stringent antimicrobial use regulations, and policy support for the sector are highly needed. Full article
(This article belongs to the Special Issue Advances in Antibiotic and Drug-Resistance Mechanisms, 2nd Edition)
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13 pages, 3771 KiB  
Article
Real-World Experience of Ceftobiprole for Community- and Hospital-Acquired Pneumonia from a Stewardship Perspective
by Silvia Corcione, Ilaria De Benedetto, Massimiliano Carlin, Emanuele Emilio Pivetta, Silvia Scabini, Cecilia Grosso, Nour Shbaklo, Massimo Porta, Enrico Lupia and Francesco Giuseppe De Rosa
Microorganisms 2024, 12(4), 725; https://doi.org/10.3390/microorganisms12040725 - 03 Apr 2024
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Abstract
Ceftobiprole is a fifth-generation cephalosporin approved by European and American regulatory agencies for the treatment of community-acquired pneumonia (CAP) and hospital-acquired pneumonia (HAP). Ceftobiprole administration is useful in severe CAP as well as HAP where the potential is to save other β-lactams including [...] Read more.
Ceftobiprole is a fifth-generation cephalosporin approved by European and American regulatory agencies for the treatment of community-acquired pneumonia (CAP) and hospital-acquired pneumonia (HAP). Ceftobiprole administration is useful in severe CAP as well as HAP where the potential is to save other β-lactams including carbapenems or linezolid/vancomycin in clinical practice. The aim of this study was to report the real-world evidence of ceftobiprole in patients with CAP and HAP in a single center. In this retrospective study, we included 159 patients with CAP or HAP: 105 (66%) had CAP and 54 (34%) had HAP. The median age was 70 years (IQR 60–77), the median Charlson Comorbidity Index was 5 (IQR 3–7.5) and baseline INCREMENT ESBL score was 8 (IQR 6–11). Ceftobiprole was mostly given as a combination treatment (77%) or as a carbapenem-sparing strategy (44%). There were no differences in mortality between shorter and longer duration of treatment (<7 days compared with ≥7 days (HR 1.02, C.I. 0.58–1.77, p = 0.93) or between first-line (HR 1.00, C.I. 0.46–2.17, p = 0.989) and second-line therapy. Ceftobiprole use in CAP or HAP in the real world is effective as a first- and second-line treatment as well as a carbapenem-sparing strategy. Further studies are needed to explore the full potential of ceftobiprole, including its real-world use in antimicrobial stewardship programs. Full article
(This article belongs to the Special Issue Advances in Antibiotic and Drug-Resistance Mechanisms, 2nd Edition)
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