1. Introduction
Endophytes have proved to be an excellent source of new bioactive molecules [
1,
2]. The endophytic fungi of the genus
Xylaria produce many types of secondary metabolites [
3,
4]. Isocoumarins are metabolites of limited distribution, which occur in bacteria, fungi and lichen [
5]. The most recent article on the genus
Xylaria described the isolation of
cis-(3
R,4
R)-5-carbomethoxy-4-hydroxymellein from the fungus
Xylaria sp. PSU-G12 [
6], however, the secondary metabolites of the
Xylaria sp. cfcc 87468 have not been investigated to date. As part of our ongoing efforts to find new bioactive natural products from the genus
Xylaria sp. cfcc 87468, the chemical constituents of the EtOAc extract of
Xylaria sp. cfcc 87468 cultures were investigated. This work resulted in the isolation of a new isocoumarin glycoside, a new phenylethanol glycoside, and five known steroids. In this paper, we describe the isolation and structure elucidation of these two new compounds, 3
R-(+)-5-
O-[6'-
O-acetyl]-
α-
d-glucopyranosyl-5-hydroxymellein (
1) and (−)-phenylethyl-8-
O-
α-
l-rhamnopyranoside (
2), and the five known compounds
3–
7 (
Figure 1).
Figure 1.
Chemical structures of compounds 1–7 from Xylaria sp. cfcc 87468.
Figure 1.
Chemical structures of compounds 1–7 from Xylaria sp. cfcc 87468.
2. Results and Discussion
Compound
1 was obtained as a colorless amorphous gum.
+60 (
c = 1.33, CH
3OH). A molecular formula of C
18H
22O
10 was assigned based on the interpretation of HRESIMS peak at
m/z 421.1097 [M+Na]
+ (calcd. 421.1105). Its IR spectrum showed characteristic hydroxyl group (3397 cm
–1), and two ester carbonyl group (1676 and 1737 cm
–1) absorptions. The
1H-NMR data of
1 (
Table 1) showed two aromatic proton signals at
δH 6.83 (d,
J = 9.2 Hz, 1H) and 7.45 (d,
J = 9.2 Hz, 1H), two methyls at
δH 1.98 (s, 3H) and 1.52 (d,
J = 6.3 Hz, 3H), and an oxygenated proton at
δH 5.35 (d,
J = 3.7 Hz, 1H). The
13C-NMR and DEPT spectra of compound
1 displayed 18 carbon signals, including two methyls, two methylenes (one oxygenated methylene), six methines, six aromatic carbons (four quaternary carbons), and two ester carbonyl groups. One set of proton signals at
δH 3.3–4.3, 5.35, and their corresponding carbons resonating at
δC 64.9, 71.9, 72.1, 73.2, 74.8, and 100.5, suggested the presence of a hexosyl sugar moiety in the molecule. The
1H-NMR spectrum exhibited protons signals at
δH 2.69 (dd,
J = 17.0, 11.7 Hz, H-4a), 3.46 (dd,
J = 17.0, 3.3 Hz, H-4b), and 4.72 (m, H-3).
Table 1.
1H-(400 MHz) and 13C-NMR (100 MHz) data of compounds 1 and 2 in CD3OD (δ in ppm).
Table 1.
1H-(400 MHz) and 13C-NMR (100 MHz) data of compounds 1 and 2 in CD3OD (δ in ppm).
Position | 1 | 2 |
---|
δH (J in Hz) | δC | δH (J in Hz) | δC |
---|
1 | | 171.4, s | | 140.4, s |
2 | | | 7.26 (overlap, 1H) | 129.3, d |
3 | 4.72 (m, 1H) | 77.8, d | 7.24 (overlap, 1H) | 129.9, d |
4 | 3.46 (dd, J = 17.0, 3.3 Hz, 1H) | 29.4, t | 7.19 (overlap, 1H) | 127.2, d |
2.69 (dd, J = 17.0, 11.7 Hz, 1H) |
5 | | 146.7, s | 7.24 (overlap, 1H) | 129.9, d |
6 | 6.83 (d, J = 9.2 Hz, 1H) | 116.7, d | 7.26 (overlap, 1H) | 129.3, d |
7 | 7.45 (d, J = 9.2 Hz, 1H) | 126.7, d | 2.86 (t, J = 6.7 Hz, 2H) | 37.1, t |
8 | | 158.5, s | 3.85 (dt, J = 9.7, 6.9 Hz, 1H) | 69.4, t |
3.63 (dt, J = 9.7, 6.7 Hz, 1H) |
9 | | 130.6, s | | |
10 | | 109.5, s | | |
11 | 1.52 (d, J = 6.3 Hz, 3H) | 21.1, q | | |
1'' | | 172.6, s | | |
2'' | 1.98 (s, 3H) | 20.7, q | | |
1' | 5.35 (d, J = 3.7 Hz, 1H) | 100.5, d | 4.65 (d, J = 1.5 Hz, 1H) | 101.5, d |
2' | 3.60 (dd, J = 9.7, 3.7 Hz, 1H) | 73.2, d | 3.77 (dd, J = 3.3, 1.7 Hz, 1H) | 72.2, d |
3' | 3.82 (m, 1H) | 74.8, d | 3.60 (dd, J = 5.9, 3.2 Hz, 1H) | 72.4, d |
4' | 3.36 (dd, J = 10.0, 8.9 Hz, 1H) | 71.9, d | 3.35 (d, J = 9.2 Hz, 1H) | 73.8, d |
5' | 3.87 (m, 1H) | 72.1, d | 3.40 (dd, J = 9.4, 6.0 Hz, 1H) | 69.7, d |
6' | 4.36 (dd, J = 11.8, 2.1 Hz, 1H) | 64.9, t | 1.19 (d, J = 6.0 Hz, 3H) | 17.9, q |
4.18 (dd, J = 11.9, 6.7 Hz, 1H) |
Furthermore, the HMBC correlations of H-4 (
δH 2.46, 2.69) with C-3 (
δC 77.8), C-5 (
δC 146.7), C-9 (
δC 130.6), and C-10 (
δC 109.5); H-6 (
δH 6.83) with C-5 (
δC 146.7), C-8 (
δC 158.5), and C-10 (
δC 109.5); H-7 (
δH 7.45) with C-5 (
δC 146.7), C-8 (
δC 158.5), and C-9 (
δC 130.6) in the HMBC spectrum as well as the spin systems in the
1H–
1H COSY spectrum (
δH 1.52/4.72,
δH 4.72/2.69, and
δH 6.83/7.45) indicated the presence of a dihydroisocoumarin skeleton (
Figure 1) [
7,
8]. In the HMBC spectrum of
1, the key HMBC correlation of H-1' (
δH 5.35) with C-5 (
δC 146.7) implied that the sugar unit was located at C-5 of the dihydroisocoumarin skeleton. In addition, the correlation of H-6' (
δH 4.36, 4.18) to C-1' (
δC 172.6) indicated that the acetyl group (
δC 172.6, 20.7) was located at C-6' of the hexosyl sugar moiety (
Figure 2). After hydrolysis of
1 with 4 M aqueous CF
3COOH the sugar unit was confirmed to be
α-
d-glucose [
9], as determined by GC analysis of its trimethylsilylated derivative and the coupling constant of its anomeric proton (
J = 3.7 Hz) [
10]. The linkage of the
d-glucose to the dihydroisocoumarin skeleton was unambiguously established by the HMBC experiment that showed cross-peaks between
δH 5.35 (H-1
glc) and
δC 146.7 (C-5).
Compound
1 has a CD spectrum that similar to that of (3
R)-5-hydroxymellein with negative extrema at 226 and 255 nm [
8]. Thus, compound
1 was identified to be 3
R-(+)-5-
O-[6'-
O-acetyl]-
α-
d-glucopyranosyl-5-hydroxymellein.
Figure 2.
Key 1H–1H COSY and the selected HMBC correlations of compounds 1 and 2.
Figure 2.
Key 1H–1H COSY and the selected HMBC correlations of compounds 1 and 2.
Compound
2 was obtained as a colorless gum with the molecular formula C
14H
20O
5, as deduced from its HRESIMS peak at
m/z 291.1200 [M+Na]
+ (calcd. 291.1203).
−46 (
c = 4.83, CH
3OH). The IR spectrum of
2 showed absorptions due to hydroxyl (3398 cm
−1) and aromatic (1452 and 1497 cm
−1) functionalities. The
1H-NMR data of
2 (
Table 1) showed a set of monosubstituted aromatic ring signals at
δH 7.15–7.28 (5H, overlapped), and a methyl doublet at
δH 1.19 (d,
J = 6.0 Hz, 3H), and oxygenated proton at
δH 4.65 (d,
J = 1.5 Hz, 1H). The
13C-NMR and DEPT showed six aromatic carbons (one quaternary carbon), two methylenes (one oxygenated), five methine carbons (three oxygenated and one anomeric), and one methyl group. According to the signals of six aromatic carbons and
1H–
1H COSY signal at H-8 (
δH 3.63, 3.85) with H-7 (
δH 2.86) indicated compound
2 was a phenylethanol derivative. A series of proton signals in the range of
δH 3.3–3.8, 4.65 (d,
J = 1.5 Hz, 1H), and 1.19 (d,
J = 6.0 Hz, 3H), and their corresponding carbons at
δC 69.7, 72.2, 72.4, 73.8, 101.5, and 17.9 were observed in the
1H- and
13C-NMR spectra, which indicated the existence of a
α-rhamnose moiety. After acid hydrolysis of
2, the sugar moiety was identified to be
α-
l-rhamnose according to the GC analysis. In the HMBC spectrum, the correlation of H-8 (
δH 3.63, 3.85) with C-1' (
δC 101.5) showed that the
α-rhamnose was attached to C-8 (
Figure 2), hence compound
2 was identified as (−)-phenylethyl-8-
O-
α-
l-rhamnopyranoside.
The known compounds
3–
7 were identified as
β-sitosterol (
3) [
11], stigmast-4-en-3-one (
4) [
12], ergosterol (
5) [
13], (22
E)-cholesta-4,6,8(14),22-tetraen-3-one (
6) [
14] and 4
α-methylergosta-8(14),24(28)-dien-3
β-ol (
7) [
15], respectively, by comparison of their spectroscopic data with literature values.
3. Experimental
3.1. General Procedures
Optical rotations were measured on a Perkin-Elmer PE-341LC polarimeter (PerkinElmer, Waltham, MA, USA). UV spectra were recorded on a PerkinElmer Lambda 35 spectrophotometer (PerkinElmer, Waltham, MA, USA). IR spectra were recorded on a Bruker VERTEX 70 spectrometer (Bruker, Ettlingcn, Germany). CD spectrum was detected on Jasco J-810 spectrometer (Jasco, Hachioji, Japan). 1D and 2D NMR spectra were recorded on a Bruker AM-400 NMR spectrometer (Bruker, Ettlingcn, Germany) using CD3OD (δH 3.31/δC 49.0) signals as standard, and chemical shifts were recorded as values. HRESIMS data were acquired using a Thermo Fisher LC-LTQ-Orbitrap XL spectrometer (Thermo Fisher, Waltham, MA, USA). TLC was carried out using glass-precoated silica gel GF254 (Qingdao Marine Chemical, Inc., Qingdao, China) and visualized under UV light or by spraying with vanillin (contains H2SO4) ethanol reagent. Silica gel (100−200 mesh and 200−300 mesh, Qingdao Marine Chemical Inc.), ODS (50 μm, YMC, Kyoto, Japan), and Sephadex LH-20 (Pharmacia Biotech AB, Uppsala, Sweden) were used for column chromatography. Semi-preparative HPLC was performed on an Agilent 1100 liquid chromatography (Agilent, Santa Clara, CA, USA) with an YMC (10 × 250 mm, 5 μm) column. GC analysis was performed with a GC-14CPTF gas chromatography system (Shimadzu, Shimane, Japan) with an Agilent Innowax capillary column.
3.2. Fungal Material and Aphylogenetic Analysis of ITS 1–4 Gene Sequence
The strain of the fungus obtained from China Forestry Culture Collection Center (CFCC, Beijing, China) was isolated from Pinus tabuliformis (altitude: 789 m; longitude: 108°; latitude: 33°) by Xiaobin Song (Associate Researcher at the College of Forestry, Northwest A&F University) in Shanxi Province at August 2008. It is available to specialists from the CFCC, Preservation Serial number: cfcc 87468. A voucher specimen of the culture (No. 2013–0820) was deposited in the herbarium of Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, Tongji Medical College, Huazhong University of Technology and Science, Wuhan, China.
Fungal genomic DNA was extracted by the CTAB method [
16]. ITS gene fragments were amplified by general primers ITS1 (5'-TCCGTAGGTGAACCTGCGG-3') and ITS4 (5'-TCCTCCGCTTATTGA TATGC-3'). The PCR conditions used were as follows: initial denaturation at 94 °C for 5 min, followed by 35 cycles of 94 °C for 1 min, 55 °C for 40 s, 72 °C for 1 min, and a final extension at 72 °C for 10 min. PCR reaction mixtures (20 μL) contained 100 ng genomic DNA, 2 μL 10 × PCR reaction buffer, 2 µL 10 μM MgCl
2, 0.5 μL 10 μM forward and reverse primers, 0.5 μL deoxyribonucleotide triphosphate (2.5 μM each), and 0.3 μL 5 U of Taq DNA polymerase. All the reagents for sequencing were from Hubei Bios Biological Technology Co, Ltd, Wuhan, China. The amplified products were sequenced and aligned with the sequences in GenBank by the BLASTN program. The results showed that the gene sequences of fungus were belonging to the
Xylaria sp.
The closest matches in Genbank were obtained from sequences that were declared to be “
Xylaria sp”. However, the highest homology with a properly identified species was that of
Nemania diffusa. The corresponding sequence showed 98% homology in BLAST [
17]. Therefore, the identity of this fungus with a member of the genus
Xylaria is not absolutely certain. As outlined by Stadler
et al. [
18], much work remains to be done until the endopyhtic
Xylariaceae can be identified on the basis of ITS DNA sequences. The gene sequence of
Xylaria sp. cfcc 87468 has been deposited in GenBank, with GenBank accession number KJ 139985.
3.3. Fermentation and Isolation
The fungus Xylaria sp. cfcc 87468 maintained in potato dextrose agar (PDA) was directly inoculated on plates of nutrient agar media kept at 28 °C for 9 days. Fermentation was carried out in 30 Erlenmeyer flasks (500 mL), each containing 100 g of rice and 0.3% peptone. Distilled H2O (100 mL) was added to each flask, and the rice was soaked overnight before autoclaving at 121 °C under 15 psi for 30 min. After cooling to room temperature, each flask was inoculated with the fresh mycelium and incubated at 28 °C for 35 days. The fermented solid rice medium (3.0 kg) was soaked with ethyl acetate (6 L × 3, 2 days for each time) at room temperature. The solvent was evaporated in vacuo to afford a residue (32.0 g).
The crude residue (32.0 g) was subjected to silica gel (200−300 mesh) column chromatography, with a step gradient elution with petroleum ether–ethyl acetate (40:1→10:1→5:1→2:1→1:1→0:1) to yield four fractions (A–D). Fraction C (12.9 g) was chromatographed on an ODS column eluted with MeOH–H2O (70:30→0:100) to provide four subfractions (Ca–Cd). Subfraction Cc was further separated over Sephadex LH-20 eluting with CHCl3–MeOH (1:1) to give three subfractions (Cca–Ccc). Subfraction Cca was further purified by semi-preparative HPLC eluted with MeOH–H2O (100:0, flow rate: 2 mL/min) to give compounds 3 (5.8 mg, tR 28 min) and 4 (6.0 mg, tR 37 min), as well as compound 5 (2.7 mg, tR 25 min) from subfraction Ccb. Fraction D (2.7 g) was subjected to ODS column chromatography eluted with MeOH–H2O (50:50→0:1) to provide three subfractions (Da–Dc). The subfraction Da was further purified by semi-preparative HPLC eluted with MeOH–H2O (45:55, flow rate: 2 mL/min) to afford compounds 1 (9.2 mg, tR 24 min) and 2 (38.0 mg, tR 20 min). Fraction Dc was separated over Sephadex LH-20 eluting with CHCl3–MeOH (1:1), then subjected to semi-preparative HPLC eluted with MeOH–H2O (100:0, flow rate: 2 mL/min) to give compounds 6 (7.4 mg, tR 45 min) and 7 (27.0 mg, tR 39 min).
3.4. Hydrolysis and Determination of the Absolute Configuration of the Sugar Moiety
A solution of 1 (1.5 mg) in 4 M aqueous CF3COOH (2.0 mL) was heated at 100 °C for 3 h in a water bath. The reaction mixture was diluted in H2O (4.0 mL) and extracted with EtOAc (4.0 mL × 3), then the aqueous layer was concentrated to remove CF3COOH. The residue was dissolved in pyridine (1.0 mL), to which l-cysteine methyl ester hydrochloride (1.5 mg) in pyridine (1.0 mL) was added. Then, the mixture was kept at 60 °C for 2 h. The reaction mixture was concentrated to dryness and then trimethylsilylimidazole (0.2 mL) was added to the residue, followed by stirring at 60 °C for 1 h in a water bath. Finally, the mixture was partitioned between hexane and H2O (0.3/4.0 mL) and the hexane extract was analyzed by gas-chromatography (GC) under the following conditions: GC-14CPTF gas chromatography system; Agilent Innowax capillary column (30 m × 0.53 mm × 1.0 μm); column temperature, 205 °C; injection temp, 250 °C; detector FID, detector temp, 250 °C; carrier N2 gas; flow rate 2.5 mL/min; hydrogen flow, 25 mL/min; air flow, 250 mL/min; make up gas flow, 20 mL/min; injection volume, 2 μL. In compound 1, d-glucose was confirmed by comparison of the retention times of the derivative with those of d-glucose and l-glucose derivatives prepared in a similar way, which showed retention times of 3.090 min and 3.632 min, respectively. As described above, the sugar in compound 2 was determined to be l-rhamnose with a retention time of 2.607 min.
3.5. Spectroscopic Data
3R-(+)-5-O-[6'-O-Acetyl]-α-d-glucopyranosyl-5-hydroxymellein (
1). A colorless amorphous gum;
+60 (
c = 1.33, CH
3OH); CD (MeOH): λ
max nm (Δε)= 205.0 (+2.33), 209.0 (+2.24), 226.6 (−2.02), 255.0 (−3.75); UV (MeOH)
λmax (lg
ε) 213 (4.47), 258 (3.70) nm; IR (film)
vmax 3397, 2921, 1737, 1676, 1476, 1390, 1248, 1128, 1050, 910, 872 cm
−1;
1H and
13C-NMR data, see
Table 1; HRESIMS
m/z 421.1097 [M + Na]
+ (calcd for C
18H
22O
10Na, 421.1105).
(−
)-Phenylethyl-8-O-α-l-rhamnopyranoside (
2). A colorless gum;
−46 (
c = 4.83, CH
3OH); UV (MeOH)
λmax (lg
ε) 218 (2.85), 333 (2.13) nm; IR (film) νmax 3398, 2930, 1497, 1542, 1130, 1092, 1053, 981, 806, 749, 699 cm
−1;
1H and
13C-NMR data, see
Table 1; HRESIMS
m/z 291.1200 [M+Na]
+ (calcd for C
14H
20O
5Na, 291.1203).