NMR Profiling of Exhaled Breath Condensate Defines Different Metabolic Phenotypes of Non-Cystic Fibrosis Bronchiectasis
Abstract
:1. Introduction
2. Results
2.1. NMR Profiling of EBC
2.2. Comparison of nCF/nPCD and PCD with HS
2.3. All-Class Comparison
2.4. Comparing nCF/nPCD and PCD Classes
2.5. PCD‒nCF/nPCD Model Validation
2.6. Pathway Topology Analysis for PCD versus nCF/nPCD Comparison
2.7. Correlations
3. Discussion
4. Materials and Methods
4.1. Patients
4.2. EBC Collection
4.3. NMR Spectroscopy Measurements
4.4. Power Analysis
4.5. Demographic Statistical Analysis
4.6. Spectral Statistical Analysis
4.7. Metabolic Pathway Analysis
Author Contributions
Funding
Conflicts of Interest
Abbreviations
1D | one-dimensional |
2D | two-dimensional |
BAL | bronchoalveolar lavage |
CF | cystic fibrosis |
COPD | chronic obstructive pulmonary disease |
EBC | exhaled breath condensate |
HRCT | high-resolution computed tomography |
HS | healthy subjects |
HSQC | heteronuclear single-quantum coherence; |
nCF/nPCD | bronchiectasis not associated with CF and PCD |
NMR | nuclear magnetic resonance |
OPLS-DA | orthogonal projections to latent structures discriminant analysis |
OSC | orthogonal signal correction |
PCA | principal component analysis |
PCD | bronchiectasis associated with primary ciliary dyskinesia |
PID | primary immunodeficiency |
PLS-DA | projection to latent structures discriminant analysis |
Q2 | goodness-of-prediction parameter |
R2 | goodness-of-fit parameter |
ROS | reactive oxygen species |
SCFAs | short-chain fatty acids |
SFAs | saturated fatty acids |
TOCSY | clean total correlation spectroscopy |
TSP | sodium 3-trimethylsilyl [2,2,3,3-2H4] propionate |
VIP | variable importance in projection. |
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PCD (n = 24) | nCF/nPCD (n = 17) | HS (n = 17) | PCD Test Set (n = 17) | |
---|---|---|---|---|
Anthropometric data | ||||
Age, yr b | 17.2 ± 0.9 (7.0–33.5) | 14.1 ± 1.1 (7.2–25.3) | 16.8 ± 0.9 (8.1–26.9) | 17.4 ± 0.9 (11.2–31.8) |
Gender, M (%)/F (%) | 16 (67)/8 (33) | 5 (29)/12 (71) | 8 (47)/9 (53) | 12 (70)/5 (30) |
Chest HRCT abnormalities c,d | ||||
Bronchiectasis, n (%) | 24 (100) | 17 (100) | - | 17 (100) |
Sputum culture e | ||||
P. aeruginosa, n (%) | 1 (4) | 2 (12) | - | 2 (10) |
S. aureus, n (%) | 1 (4) | 1 (6) | - | 4 (20) |
H. influenzae, n (%) | 7 (29) | 3 (18) | - | 12 (60) |
S. pneumoniae, n (%) | 3 (12.5) | - | - | 12 (60) |
Spirometry f | ||||
FEV1, % pred | 81.0 ± 20.9 | 83.2 ± 25.8 | - | 80.3 ± 2.5 |
FVC, % pred | 90.1 ± 25.9 | 88.2 ± 20.4 | - | 92.6 ± 3.9 |
FEV1/FVC, (%) | 79.0 ± 12.7 | 84.0 ± 17.2 | - | 79.9 ± 13.8 |
FEF25–75, % pred | 52.3 ± 25.0 | 69.1 ± 39.0 | - | 54.1 ± 25.9 |
nCF/nPCD versus HS | PCD versus HS | |
---|---|---|
Methanol | Methanol | |
Acetone/Acetoin | ‒ | |
Ethanol | Ethanol | |
2-Propanol | 2-Propanol | |
Propionate | ‒ | |
‒ | Lactate | |
Formate | Formate | |
Acetate | Acetate | |
Lactate | ‒ | |
SFAs | SFAs |
nCF/nPCD | PCD | HS |
---|---|---|
Methanol | Lactate | Formate |
Acetone/Acetoin | Ethanol | Acetate |
2-Propanol | SFAs |
nCF/nPCD | PCD |
---|---|
Methanol | Formate |
Acetone/Acetoin | Ethanol |
2-Propanol | Acetate |
Isobutyrate | Lactate |
Propionate | SFAs |
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Paris, D.; Palomba, L.; Mirra, V.; Borrelli, M.; Corcione, A.; Santamaria, F.; Maniscalco, M.; Motta, A. NMR Profiling of Exhaled Breath Condensate Defines Different Metabolic Phenotypes of Non-Cystic Fibrosis Bronchiectasis. Int. J. Mol. Sci. 2020, 21, 8600. https://doi.org/10.3390/ijms21228600
Paris D, Palomba L, Mirra V, Borrelli M, Corcione A, Santamaria F, Maniscalco M, Motta A. NMR Profiling of Exhaled Breath Condensate Defines Different Metabolic Phenotypes of Non-Cystic Fibrosis Bronchiectasis. International Journal of Molecular Sciences. 2020; 21(22):8600. https://doi.org/10.3390/ijms21228600
Chicago/Turabian StyleParis, Debora, Letizia Palomba, Virginia Mirra, Melissa Borrelli, Adele Corcione, Francesca Santamaria, Mauro Maniscalco, and Andrea Motta. 2020. "NMR Profiling of Exhaled Breath Condensate Defines Different Metabolic Phenotypes of Non-Cystic Fibrosis Bronchiectasis" International Journal of Molecular Sciences 21, no. 22: 8600. https://doi.org/10.3390/ijms21228600
APA StyleParis, D., Palomba, L., Mirra, V., Borrelli, M., Corcione, A., Santamaria, F., Maniscalco, M., & Motta, A. (2020). NMR Profiling of Exhaled Breath Condensate Defines Different Metabolic Phenotypes of Non-Cystic Fibrosis Bronchiectasis. International Journal of Molecular Sciences, 21(22), 8600. https://doi.org/10.3390/ijms21228600