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Article

The CFTR Amplifier Nesolicaftor Rescues TGF-β1 Inhibition of Modulator-Corrected F508del CFTR Function

Department of Internal Medicine, University of Kansas Medical Center, Kansas City, KS 66160, USA
*
Author to whom correspondence should be addressed.
These authors contributed equally to this work.
Int. J. Mol. Sci. 2022, 23(18), 10956; https://doi.org/10.3390/ijms231810956
Submission received: 30 August 2022 / Revised: 13 September 2022 / Accepted: 15 September 2022 / Published: 19 September 2022
(This article belongs to the Special Issue Cystic Fibrosis and CFTR Interactions)

Abstract

:
Highly effective cystic fibrosis transmembrane conductance regulator (CFTR) modulators have led to dramatic improvements in lung function in many people with cystic fibrosis (PwCF). However, the efficacy of CFTR modulators may be hindered by persistent airway inflammation. The cytokine transforming growth factor-beta1 (TGF-β1) is associated with worse pulmonary disease in PwCF and can diminish modulator efficacy. Thus, strategies to augment the CFTR response to modulators in an inflammatory environment are needed. Here, we tested whether the CFTR amplifier nesolicaftor (or PTI-428) could rescue the effects of TGF-β1 on CFTR function and ciliary beating in primary human CF bronchial epithelial (CFBE) cells. CFBE cells homozygous for F508del were treated with the combination of elexacaftor/tezacaftor/ivacaftor (ETI) and TGF-β1 in the presence and absence of nesolicaftor. Nesolicaftor augmented the F508del CFTR response to ETI and reversed TGF-β1-induced reductions in CFTR conductance by increasing the expression of CFTR mRNA. Nesolicaftor further rescued the reduced ciliary beating and increased expression of the cytokines IL-6 and IL-8 caused by TGF-β1. Finally, nesolicaftor augmented the F508del CFTR response to ETI in CFBE cells overexpressing miR-145, a negative regulator of CFTR expression. Thus, CFTR amplifiers, but only when used with highly effective modulators, may provide benefit in an inflamed environment.

1. Introduction

Cystic fibrosis (CF) is a life-limiting, autosomal recessive monogenic disorder affecting approximately 100,000 individuals worldwide. Pathogenic mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene lead to aberrant chloride and bicarbonate secretion across epithelial tissues [1]. The most common CFTR mutation, F508del, leads to altered protein folding, poor intracellular trafficking, and eventual degradation in the endoplasmic reticulum [2]. At the airway surface, CFTR acts in concert with other apical ion channels, including epithelial sodium channels (ENaC), calcium-activated chloride channels (CaCC), and large conductance, Ca2+-activated, and voltage-gated K+ (BK) channels to regulate hydration of the airway surface liquid (ASL) to allow normal mucociliary clearance (MCC) [3,4]. Mutant CFTR effectuates defective MCC, causing a cycle of mucus stasis, hyperinflammation and microbial colonization leading to progressive lung function decline, which is the primary cause of morbidity and mortality in people with CF (PwCF). The cytokine transforming growth factor-beta 1 (TGF-β1) has been implicated in this hyperinflammatory process [5,6,7]. Activation of TGF-β1 signaling pathways leads to an inflammatory cascade and elevated levels of TGF-β1 have been associated with worse lung disease in PwCF [8,9]. Additionally, TGF-β1 is known to decrease CFTR mRNA levels by increasing the expression of microRNA-145 (miR-145) [6,7,10], thereby diminishing the efficacy of CFTR modulators [10,11].
CFTR modulators are small molecules that correct the underlying defect in the mutant CFTR protein. In clinical trials and real-world studies, these therapies lead to improvements in lung function, exacerbation frequency and quality of life [12,13,14,15]. The triple combination of elexacaftor/tezacaftor/ivacaftor (ETI or Trikafta®) leads to significant correction of F508del CFTR function in vitro as well as remarkable improvements in lung function in many, but not all, PwCF carrying at least one copy of F508del [14]. We recently found that TGF-β1 greatly diminishes the efficacy of ETI in vitro and that poor sweat chloride concentration responses, a surrogate measure of CFTR function, correlated with elevated levels of TGF-β1 in the upper airways of PwCF upon initiation of ETI [11]. Although anti-inflammatory therapies can counter some of the effects of TGF-β1 in the CF airway epithelium in vitro [11,16], additional strategies may be required to improve the CFTR response to modulators in a TGF-β1 dominant inflammatory environment.
A relatively new class of modulators, termed amplifiers, seek to improve CFTR protein biosynthesis and thus augment the function of CFTR correctors and potentiators [17]. The amplifier nesolicaftor (also known as PTI-428) can increase CFTR mRNA stability and translation, independent of CFTR genotype. This is accomplished, at least in part, by the association of nesolicaftor with poly(rC)-binding protein 1 (PCBP1) [18]. PCBP1 binds to consensus sequences in the mRNA to promote stabilization and translation [19,20]. Previous studies have shown that nesolicaftor can further improve CFTR conductance afforded by earlier generation CFTR correctors and potentiators in clinically relevant in vitro model systems [21,22]. Nesolicaftor has also been investigated in clinical trials along with approved as well as novel CFTR modulators with purported beneficial, but only small, effects [23]. Here, we investigated whether nesolicaftor could improve the F508del CFTR response to ETI, a highly effective CFTR modulator, in the setting of the inflammatory mediator TGF-β1 in vitro. We show that nesolicaftor rescues the TGF-β1-mediated inhibition of ETI-corrected CFTR function in primary human F508del CF bronchial epithelial (CFBE) cells, likely through mRNA stabilization. Nesolicaftor further reverses TGF-β1-induced reductions in ciliary beating and increases in secreted cytokine levels indirectly through its effects on apical ion channel function. Thus, amplifiers may impart greater benefit under certain inflammatory conditions in the CF airway.

2. Results

2.1. Nesolicaftor Exerts Differential Effects on Modulator-Corrected CFTR Function in F508del CFTR 16HBEge Cells In Vitro

We investigated the effects of nesolicaftor on the modulator correction of F508del CFTR using the 16HBE gene edited (16HBEge) human bronchial epithelial cell line with the F508del CFTR mutation engineered by the Cystic Fibrosis Foundation Therapeutics Lab [24]. Confluent submerged monolayers of F508del CFTR 16HBEge cells were treated for 24 h with nesolicaftor (10 µM) and the combination of lumacaftor/ivacaftor (LI), tezacaftor/ivacaftor (TI), or elexacaftor/tezacaftor/ivacaftor (ETI) before short-circuit currents (ISC) were measured in Ussing chambers. Ivacaftor was added acutely in Ussing chambers to potentiate CFTR function in all experiments (Figure 1A).
Nesolicaftor significantly increased F508del CFTR function compared to controls (Figure 1B), consistent with a previous report [22]. Nesolicaftor caused a relative increase in F508del CFTR function by 70% in LI-treated cells compared to LI alone and by 29% in TI-treated cells compared to TI alone (Figure 1B). On the other hand, nesolicaftor failed to improve the F508del CFTR response to ETI (Figure 1B). However, ETI restored F508del CFTR function to near wild-type levels (Supplementary Figure S1), suggesting that further modulation with the addition of nesolicaftor was not possible. Moreover, nesolicaftor did not significantly increase expression levels of CFTR mRNA in modulator-treated F508del CFTR 16HBEge cells compared to controls (Supplementary Figure S2).

2.2. Nesolicaftor Augments ETI-Corrected F508del CFTR Function in Primary CFBE Cells In Vitro

We next sought to determine whether nesolicaftor exerts similar effects on ETI-corrected F508del CFTR function in primary human CF bronchial epithelial (CFBE) cells cultured at the air-liquid interface (ALI). Fully differentiated CFBE cells homozygous for F508del have minimal CFTR function that is significantly corrected by ETI (Supplementary Figure S3). These cells were treated for 24 h with ETI in the presence or absence of nesolicaftor (10 µM). Nesolicaftor significantly increased ETI-corrected F508del CFTR function in primary CFBE cells (Figure 2A,B). Furthermore, CFBE cells treated with nesolicaftor showed a nearly threefold increase in expression levels of CFTR mRNA compared to cells treated with ETI alone (Figure 2C). The effects of nesolicaftor on ion channel function were not restricted to CFTR, as nesolicaftor further enhanced the conductance of both ENaC and CaCC, consistent with a previous report (Figure 2D,E) [22]. Interestingly, nesolicaftor increased CaCC function in CFBE cells even in the absence of ETI (Supplementary Figure S4).
Nesolicaftor increased the mRNA expression of sodium channel epithelial 1 subunit beta (SCNN1B), but not SCNN1A, suggesting that nesolicaftor is not causing a global increase in ion channel expression (Figure 2F,G). As SCNN1A expression is more abundant than SCNN1B, SCNN1B is thought to be rate-limiting and increased expression of SCNN1B is sufficient to drive an increase in ENaC function [25]. Nesolicaftor further increased the mRNA expression of anoctamin 1(ANO1), also known as TMEM16A (Figure 2H), an integral subunit of CaCC [26]. Overall, these data suggest that the ability of nesolicaftor to augment ETI-corrected F508del CFTR function differs between 16HBEge and primary CFBE cells. These data also provide further evidence that nesolicaftor is not specific for CFTR and that it regulates the expression of other ion channels to modulate their function in the airway.

2.3. Nesolicaftor Reverses TGF-β1-Induced Decreases in ETI-Corrected F508del CFTR Function and Ciliary Beating in Primary CFBE Cells In Vitro

The ability of nesolicaftor to increase CFTR mRNA expression in primary CFBE cells led us to investigate whether nesolicaftor could rescue the effects of TGF-β1 on CFTR function. Treatment of F508del CFTR CFBE cells with TGF-β1 (5 ng/mL) caused a significant reduction in ETI-corrected F508del CFTR function after 24 h (Figure 3A,B). On the other hand, TGF-β1 did not significantly affect ETI-corrected F508del CFTR conductance in 16HBEge F508del CFTR cells (Supplementary Figure S5). TGF-β1 reduces CFTR function in part by reducing CFTR mRNA expression through the induction of miR-145 [6,7,10]. However, TGF-β1 failed to reduce CFTR mRNA expression in 16HBEge cells (Supplementary Figure S5), revealing differences in how CFTR expression is regulated in primary CFBE and 16HBEge cells.
Treatment of CFBE cells with nesolicaftor (10 µM) rescued the effects of TGF-β1 on ETI-corrected F508del CFTR function after 24 h (Figure 3B). Moreover, CFTR activity was significantly greater in ETI- and nesolicaftor-treated CFBE cells in the presence of TGF-β1 compared to ETI-treated CFBE cells in the absence of TGF-β1 (Figure 3B). Nesolicaftor further reversed the decrease in CFTR mRNA expression induced by TGF-β1 (Figure 3C). Interestingly, TGF-β1 caused a significant reduction in ENaC function, but did not affect CaCC activity (Figure 3D,E). However, nesolicaftor increased both ENaC and CaCC activities in the presence of TGF-β1 (Figure 3D,E). The net effect of ion channel dysfunction caused by TGF-β1 was a significant reduction in ciliary beating after 24 h (Figure 3F). However, nesolicaftor was able to rescue TGF-β1-induced decreases in ciliary beating in ETI-treated F508del CFTR CFBE cells (Figure 3F).

2.4. Nesolicaftor Reverses TGF-β1-Induced Inflammation in ETI-Treated Primary CFBE Cells In Vitro

Treatment of F508del CFTR CFBE cells with TGF-β1 (5 ng/mL) caused significant increases in the levels of secreted IL-6 and IL-8 proteins despite the presence of ETI (Figure 4). Nesolicaftor rescued the increase in IL-6 levels and partially reversed the increase in IL-8 levels induced by TGF-β1 after 24 h (Figure 4).

2.5. miR-145 Exposure Mimics TGF-β1 Effects, Which Are Reversed by Nesolicaftor

TGF-β1 reduces CFTR mRNA expression in CFBE cells via the induction of the microRNA miR-145 [10]. Therefore, we tested whether nesolicaftor could reverse the effects of miR-145 on CFTR function and mRNA expression. Primary homozygous F508del CFTR CFBE cells were infected with a miR-145 lentiviral expression vector. Expression levels of miR-145 were significantly elevated in miR-145-infected cells compared to controls (Supplementary Figure S6). Nesolicaftor (10 µM) significantly increased CFTR function and expression levels of CFTR mRNA in ETI-treated CFBE cells overexpressing miR-145 after 24 h (Figure 5A–C). ENaC and CaCC activities were further significantly increased by nesolicaftor in miR-145-infected cells (Figure 5D,E).

3. Discussion

Despite the marked impact of ETI on pulmonary disease in PwCF, the degree of response in lung function and sweat chloride is not uniform [14], and the long-term impact is still unclear. Extended studies of the modulator ivacaftor in those with the G551D mutation provide evidence that, after an initial increase, the lung function trajectory of those on ivacaftor approximates that of a non-modulator control group by year seven [27]. The underlying reasons for the diminishing efficacy of CFTR modulators are likely to be numerous. Airway inflammation influences the efficacy of modulators [10,11,28,29], yet the composition of the inflammatory milieu in the CF airway is likely to dictate whether it will have a beneficial or detrimental effect on modulator therapy. Although some inflammatory cytokines can augment the effects of ETI [28,29], the cytokine TGF-β1 negatively regulates CFTR expression and function, even in the presence of ETI. This occurs through TGF-β1-mediated increases in miR-145 and cyclooxygenase-2 expression [6,11]. This underscores the need to develop therapies that, when used in conjunction with CFTR modulators, can further restore CFTR function towards wild-type levels and maximize their beneficial effects under inflammatory conditions.
The first-in-class amplifier nesolicaftor increases CFTR mRNA stability in vitro and was further shown to increase CFTR protein expression in the nasal mucosa of study participants with CF [30]. Here, we showed that nesolicaftor can augment the F508del CFTR response to ETI in primary CFBE cells in vitro. Importantly, nesolicaftor was further able to rescue the inhibition of ETI-corrected F508del CFTR function caused by TGF-β1. Nesolicaftor increased the expression of CFTR mRNA, consistent with its function as an amplifier. Notably, nesolicaftor increased expression levels of CFTR mRNA by nearly five-fold in TGF-β1 exposed CFBE cells. TGF-β1 causes significant downregulation of CFTR mRNA expression in part by inducing the expression of miR-145 [10]. However, it is unclear how nesolicaftor reverses the effects of TGF-β1, and thus miR-145, on CFTR mRNA expression and translation.
Previous studies found that nesolicaftor increases CFTR mRNA stability via its interactions with PCBP1 [18]. PCBP1 preferentially binds to CU-rich elements and can regulate alternative splicing, translation, and the RNA stability of many different genes [31]. Nesolicaftor binds directly to PCBP1, which binds to a PCBP1 consensus site located within an open reading frame (ORF) of CFTR mRNA to increase its stability [18]. Although this is likely to be a part of the mechanism by which nesolicaftor rescues the effects of TGF-β1 on CFTR mRNA expression, the 3′-UTR of CFTR contains many CU-rich regions that may act as PCBP1 binding sites. Additionally, the 3′-UTR of CFTR also contains many miRNA recognition elements (MREs), including one for miR-145. Thus, it is possible that a nesolicaftor-PCBP1 complex could sterically inhibit miR-145 from binding as the suppression of the miRNA target is largely dependent on binding site accessibility. Although these experimental conditions were not tested, they warrant further investigation.
Given its interaction with PCBP1, it is unlikely that the action of nesolicaftor is specific for CFTR. Indeed, in addition to its effects on CFTR function, we also observed significant increases in ENaC and CaCC conductance, both in the presence and absence of TGF-β1. The effects of nesolicaftor are consistent with the recent report by Venturini et al. [22]. We show here that nesolicaftor increases mRNA expression levels of SCNN1B, but not SCNN1A, suggesting nesolicaftor is not exerting global effects on mRNA translation and/or stability. Nesolicaftor further increased the expression of ANO1 mRNA, which is critical for CaCC function. Although increased CaCC function is expected to correlate with increased airway hydration and MCC [32], ENaC function is associated with dehydration, reduced ciliary beating (due to airway surface liquid volume loss) and MCC [33]. Nesolicaftor also reversed TGF-β-induced reduction in ENaC activity. However, the net effect was a rescue of ciliary beating, indicating restoration of airway surface liquid. Furthermore, nesolicaftor reversed the increase in secreted IL-6 (p < 0.05) and IL-8 (trend but non-significant) levels induced by TGF-β1. Future studies in this model system with physiologic outputs of MCC will better define the respective contributions of ion channels alternative to CFTR upon modulation by nesolicaftor.
Interestingly, although we saw significant, but possibly clinically unimportant, CFTR current improvements in the F508del CFTR 16HBEge cell line when exposed to nesolicaftor and earlier generation CFTR modulators, this effect was not seen with ETI. Additionally, there was no significant reduction in CFTR expression or function in response to TGF-β1 (Figure 1 and Figure S1). The mechanism underlying the differential response to nesolicaftor as well as TGF-β1 between the submerged 16HBEge cell line and primary CFBE cells, which are re-differentiated at the air-liquid interface, is unclear. Given that the level of wild-type CFTR current in 16HBE14o- cells was on par with ETI-corrected F508del CFTR current, it is likely that further increases with the addition of nesolicaftor were not possible [34]. Additionally, it is possible that the immortalization of the parent 16HBE14o- cell line and frequent passaging could contribute to both genetic and epigenetic changes [35]. As compared to primary cells, in immortal cell lines, several signaling pathways are modulated and are known to be phenotypically different [34]. In a proteomics study, mouse liver cell lines showed enhanced TGF-β1 signaling compared to primary hepatocytes, suggesting that cellular signaling pathways are modified to compete with the increased proliferation rate [34]. In our cell culture model, there is no change in CFTR mRNA expression in TGF-β1 treated 16HBEge cells, which could be due to altered signaling. This finding may have implications for the choice of in vitro model systems for future studies utilizing CFTR amplifiers.
In conclusion, our study is the first to show that CFTR amplifiers can improve the response to the modulator ETI, despite the presence of inflammation, in a relevant in vitro model system. This lends further support to the potential clinical benefits of CFTR amplifiers as an add-on therapy to current generation highly effective CFTR modulators. However, the non-specific effects of nesolicaftor potentially hinder the broad application of this therapy. Improving the specificity of amplifiers could potentially increase the clinical benefit of such a therapy, particularly in an inflamed airway environment. Moreover, the ability of a more specific amplifier would be beneficial for other CFTR mutations that are currently ineligible for modulator therapies.

4. Materials and Methods

4.1. Chemicals

Nesolicaftor (PTI-428; Cat. No. HY-111680) was acquired from MedChemExpress (Monmouth Junction, NJ, USA). Lumacaftor (VX-809; Cat. No. S1565), ivacaftor (VX-770; Cat. No. S1144), tezacaftor (VX-661; Cat. No. S7059), and elexacaftor (VX-445; Cat. No. S8851) were acquired from Selleck Chemicals LLC (Houston, TX, USA). Recombinant human TGF-β1 (Cat. No. 240-B) was acquired from R&D Systems (Minneapolis, MN, USA).

4.2. Lungs

CF bronchial epithelial (CFBE) cells were obtained from the explanted lungs of appropriately consented CF patients undergoing lung transplantation, approved by the Institutional Review Board (IRB) of the University of Miami.

4.3. Cell Culture

The F508del CFTR 16HBEge cell line was kindly provided by the Cystic Fibrosis Foundation Therapeutics Lab. 16HBEge cells were cultured on collagen coated dishes in Minimal Essential Medium (Cat. No. 11095072; ThermoFisher Scientific, Waltham, MA, USA) with 10% heat inactivated fetal bovine serum (Cat. No. 26400044; ThermoFisher Scientific, Waltham, MA, USA) and 1% penicillin-streptomycin (Cat. No. 15140-122; ThermoFisher Scientific, Waltham, MA, USA). After reaching 80–100% confluency, cells were plated on Collagen IV (Cat. No. C7521; Sigma-Aldrich, St. Louis, MO, USA) coated Transwell filters at a density of 2 × 105 cells/cm2 and maintained at 37 °C and 5% CO2. 16HBEge cells were grown in liquid-liquid interface for one week and media was changed every other day. The wild-type 16HBE14o- cell line was acquired from the American Type Culture Collection (ATCC, Manassas, VA, USA).
ALI cultures of primary human CFBE cells were established as previously described [11,16,36,37]. Briefly, CFBE cells were expanded in PneumaCultTM-Ex Plus Medium (Cat. No. 05040; STEMCELL Technologies, Cambridge, MA, USA) supplemented with 50 µg/mL gentamycin (Cat. No. 15710-064; ThermoFisher Scientific, Waltham, MA, USA) and 2.5 µg/mL amphotericin B (Cat. No. 15290-026; ThermoFisher Scientific, Waltham, MA, USA). CFBE cells were expanded further in a Bronchial Epithelial Cell Growth Medium (BEGM) before being seeded on Transwell inserts (Cat. No. 3460; Corning, Corning, NY, USA) or Snapwell inserts (Cat. No. 3801; Corning, Corning, NY, USA) at a density of 2 × 105 cells in ALI media. ALI media was prepared according to established protocols [38]. The cells were kept submerged in ALI media until confluency before exposing them to air. ALI media was replaced every other day and the apical surface was washed using DPBS (Cat. No. 21-030-CV; Corning, Corning, NY, USA). The cells were allowed to differentiate for four to six weeks before the experiments were carried out.

4.4. miR-145 Lentivirus Transduction

CFBE cells were seeded at a density of 5 × 104 cells/well in BEGM on collagen coated Transwell inserts in a 24-well plate (Cat. No. 3470; Corning, Corning, NY, USA). On the day of transduction, the apical media was replaced with fresh media (100 µL) containing 8 µg/mL polybrene and 50 µL of human miR-145 lentivirus (Cat. No. mir-LV116; Biosettia, San Diego, CA, USA) or infection control lentivirus (Cat. No. mir-LV000). After 24 h, lentivirus- and polybrene-containing media was replaced with fresh ALI media. The following day, transduced cells were selected with ALI media containing 1 µg/mL puromycin (Cat. No. A11138; ThermoFisher Scientific, Waltham, MA, USA) and maintained at a liquid-liquid interface for three to five days or until they reached confluency before exposure to air. ALI cultures of transduced cells were allowed to differentiate for three to four weeks in ALI media containing puromycin before experiments were performed.

4.5. Ussing Chambers

Ion channel activities from 16HBEge cells and fully differentiated CFBE cells were recorded in Ussing chambers as described previously [11]. Briefly, Snapwell or Transwell filters were mounted in Ussing chambers (EasyMount chamber; Physiologic Instruments, Reno, NV, USA) connected to a VCC MC8 voltage clamp unit (Physiologic Instruments, Reno, NV, USA). Solutions were maintained at 37 °C by heated water jackets and bubbled with CO2. CFTR-dependent short-circuit currents (ISC) were measured as the change in ISC after CFTR inhibition by 10 µM CFTRinh-172 (Cat. No. C2992; Sigma-Aldrich, St. Louis, MO, USA) in the presence of 10 µM amiloride (Cat. No. A7410; Sigma-Aldrich, St. Louis, MO, USA) following CFTR potentiation and stimulation by 1 µM ivacaftor (VX-770) and 10 µM forskolin (Cat. No. F3917; Sigma-Aldrich, St. Louis, MO, USA), respectively. CaCC was stimulated by 100 µM UTP (Cat. No. ab146222; Abcam, Cambridge, MA, USA).

4.6. Ciliary Beat Frequency (CBF)

The CBF of primary CFBE cells was recorded using a high-speed Basler acA645 camera (Basler, Ahrensburg, Germany) mounted on a Zeiss Axiovert running SAVA turnkey system (Ammons Engineering, Clio, MI, USA) as previously described [39]. CBF was analyzed using the individual region-of-interest (ROI) method by SAVA [40]. Ciliary beating was recorded 1–2 mm away from the center of the insert, free of influence by liquid meniscus, for 2 s at four different ROIs.

4.7. Quantitative PCR (qPCR)

Total RNA was isolated from 16HBEge and primary CFBE cells using the E.Z.N.A.® Total RNA Kit (Omega Bio-tek, Norcross, GA, USA) or miRNeasy Mini Kit (Qiagen, Germantown, MD, USA). TaqMan™ MicroRNA Reverse Transcription Kit (ThermoFisher Scientific, Waltham, MA, USA) was used for miR-145 cDNA synthesis. qPCR was performed using TaqMan Gene Expression Assays (ThermoFisher Scientific, Waltham, MA, USA) for miR-145 (Assay ID 002278 assay name hsa-miR-145), CFTR (Hs00357011_m1), ANO1 (Hs00216121_m1), SCNN1A (Hs01013032_m1), and SCNN1B (Hs01548617_m1). U6 was used as a reference gene for miR-145. GAPDH was used as a reference gene for CFTR, ANO1, SCNN1A, and SCNN1B.

4.8. ELISA

Basolateral media samples were analyzed using the Ella Automated Immunoassay System and Simple Plex cartridge-based immunoassay for IL-6 and IL-8 (Bio-Techne Corp., Minneapolis, MN, USA).

4.9. Statistics

Data are presented as mean ± SEM and are considered statistically significant when p < 0.05. All data were analyzed for normality distribution using the Shapiro-Wilk test. Paired or unpaired t-tests were used to compare the two groups. The two groups were compared with Mann-Whitney (non-parametric) tests if data was not normally distributed. A one-way ANOVA was used to compare multiple groups followed by Holm-Sidak. A Kruskal-Wallis (non-parametric) test was used to compare multiple groups if data was not normally distributed.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/ijms231810956/s1.

Author Contributions

Conceptualization, C.B., N.S., N.B., M.K. and M.S.; methodology, all authors; software, C.B., N.S. and M.K.; validation, C.B., N.S. and M.K.; formal analysis, C.B., N.S. and M.K.; investigation, C.B., N.S., N.B., M.Y., S.Y., J.D. and M.K.; writing—original draft preparation, C.B., N.S., M.K. and M.S.; writing—review and editing, C.B., N.S., M.Y., S.Y., J.D., N.B., M.K. and M.S.; visualization, C.B., N.S. and M.K.; supervision, C.B., M.K. and M.S.; project administration, M.S.; funding acquisition, C.B., M.K. and M.S. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the Cystic Fibrosis Foundation (CFF), SALATH18I0 and 003221G221 (to M.S.); NIH/NHLBI, HL133240 and HL139365 (to M.S.) and HL157942 (to M.S. and M.K.).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The data presented here are available upon request from the corresponding author.

Acknowledgments

We owe a large debt of gratitude to all the CF patients at the University of Miami who donated their explanted lungs. We would also like to thank the CFF Therapeutics Lab for providing the 16HBEge cells.

Conflicts of Interest

The authors declare that they have no conflict of interest.

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Figure 1. Effects of nesolicaftor (NES) on modulator-corrected F508del CFTR function in 16HBEge cells in vitro. (A) Confluent monolayers of F508del CFTR 16HBEge cells were treated with DMSO, NES (10 µM), lumacaftor (5 µM)/ivacaftor (1 µM) (LI), LI + NES, tezacaftor (5 µM)/ivacaftor (1 µM) (TI), TI + NES, elexacaftor (1 µM)/tezacaftor (5 µM)/ivacaftor (1 µM) (ETI), or ETI + NES both apically and basolaterally for 24 h. CFTR-dependent short-circuit currents (ISC) were measured in Ussing chambers as the change in ISC after CFTRinh-172 (10 µM) following forskolin (10 µM) stimulation in the presence of amiloride (10 µM) and ivacaftor (IVA; 1 µM). (B) Nesolicaftor alone increases F508del CFTR function. Nesolicaftor further increases F508del CFTR function in 16HBEge cells treated with LI or TI. Nesolicaftor does not improve F508del CFTR function in 16HBEge cells treated with ETI. n = 5. Statistics: * p < 0.05, Student’s t-test between treatment groups after assessing normality with Shapiro-Wilk. ns = not significant.
Figure 1. Effects of nesolicaftor (NES) on modulator-corrected F508del CFTR function in 16HBEge cells in vitro. (A) Confluent monolayers of F508del CFTR 16HBEge cells were treated with DMSO, NES (10 µM), lumacaftor (5 µM)/ivacaftor (1 µM) (LI), LI + NES, tezacaftor (5 µM)/ivacaftor (1 µM) (TI), TI + NES, elexacaftor (1 µM)/tezacaftor (5 µM)/ivacaftor (1 µM) (ETI), or ETI + NES both apically and basolaterally for 24 h. CFTR-dependent short-circuit currents (ISC) were measured in Ussing chambers as the change in ISC after CFTRinh-172 (10 µM) following forskolin (10 µM) stimulation in the presence of amiloride (10 µM) and ivacaftor (IVA; 1 µM). (B) Nesolicaftor alone increases F508del CFTR function. Nesolicaftor further increases F508del CFTR function in 16HBEge cells treated with LI or TI. Nesolicaftor does not improve F508del CFTR function in 16HBEge cells treated with ETI. n = 5. Statistics: * p < 0.05, Student’s t-test between treatment groups after assessing normality with Shapiro-Wilk. ns = not significant.
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Figure 2. Nesolicaftor (NES) improves ETI-corrected F508del CFTR function in primary CFBE cells in vitro. (A) Fully differentiated ALI cultures of primary human CFBE cells homozygous for F508del were treated with elexacaftor (1 µM)/tezacaftor (5 µM)/ivacaftor (1 µM) (ETI) or ETI + NES (10 µM) for 24 h and CFTR-dependent ISC was measured in Ussing chambers. (B) Nesolicaftor significantly increases F508del CFTR function in ETI-treated CFBE cells after 24 h. n = 6, 3 CF lungs. (C) Nesolicaftor significantly increases expression levels of CFTR mRNA compared to ETI alone. n = 6, 3 CF lungs. (D,E) Amiloride-sensitive ISC (ENaC function) (D) and UTP-stimulated ISC (CaCC function) (E) are significantly increased by nesolicaftor in ETI-treated CFBE cells after 24 h. n = 6, 3 CF lungs. (F,G) Nesolicaftor significantly increases the expression of SCNN1B, but not SCNN1A, mRNA in ETI-treated CFBE cells after 24 h. n = 5, 3 CF lungs. (H) Nesolicaftor also causes a significant increase in the expression of ANO1 mRNA in ETI-treated CFBE cells after 24 h. n = 5, 3 CF lungs. Statistics: * p < 0.05, Student’s t-test after assessing normality with Shapiro-Wilk.
Figure 2. Nesolicaftor (NES) improves ETI-corrected F508del CFTR function in primary CFBE cells in vitro. (A) Fully differentiated ALI cultures of primary human CFBE cells homozygous for F508del were treated with elexacaftor (1 µM)/tezacaftor (5 µM)/ivacaftor (1 µM) (ETI) or ETI + NES (10 µM) for 24 h and CFTR-dependent ISC was measured in Ussing chambers. (B) Nesolicaftor significantly increases F508del CFTR function in ETI-treated CFBE cells after 24 h. n = 6, 3 CF lungs. (C) Nesolicaftor significantly increases expression levels of CFTR mRNA compared to ETI alone. n = 6, 3 CF lungs. (D,E) Amiloride-sensitive ISC (ENaC function) (D) and UTP-stimulated ISC (CaCC function) (E) are significantly increased by nesolicaftor in ETI-treated CFBE cells after 24 h. n = 6, 3 CF lungs. (F,G) Nesolicaftor significantly increases the expression of SCNN1B, but not SCNN1A, mRNA in ETI-treated CFBE cells after 24 h. n = 5, 3 CF lungs. (H) Nesolicaftor also causes a significant increase in the expression of ANO1 mRNA in ETI-treated CFBE cells after 24 h. n = 5, 3 CF lungs. Statistics: * p < 0.05, Student’s t-test after assessing normality with Shapiro-Wilk.
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Figure 3. Nesolicaftor (NES) rescues TGF-β1-induced reductions in CFTR function and ciliary beating in primary CFBE cells in vitro. (A) Fully differentiated ALI cultures of primary human CFBE cells homozygous for F508del were treated with elexacaftor (1 µM)/tezacaftor (5 µM)/ivacaftor (1 µM) (ETI), ETI + TGF-β1 (5 ng/mL), or ETI + TGF-β1 + NES (10 µM) for 24 h and CFTR-dependent ISC was measured in Ussing chambers. (B) Nesolicaftor reverses the reduction in ETI-corrected F508del CFTR function caused by TGF-β1. n = 8, 3 CF lungs. (C) TGF-β1 significantly reduces levels of CFTR mRNA expression in ETI-treated CFBE cells. CFTR mRNA levels are restored by nesolicaftor. n = 6, 3 CF lungs. (D) Amiloride-sensitive ISC (ENaC function) is significantly reduced by TGF-β1. Nesolicaftor increases ENaC function in the presence of TGF-β1. n = 8, 3 CF lungs. (E) TGF-β1 does not significantly affect UTP-stimulated ISC (CaCC function). Nesolicaftor significantly increases CaCC function in the presence of TGF-β1. n = 8, 3 CF lungs. (F) TGF-β1 causes a significant reduction in ciliary beat frequency (CBF) in ETI-treated F508del CFTR CFBE cells after 24 h. TGF-β1-induced reductions in CBF are reversed by nesolicaftor. n = 5, 3 CF lungs. Statistics: * p < 0.05, one-way ANOVA followed by Holm-Sidak (B,D,F) or Friedman test (C,E) after assessing normality with Shapiro-Wilk. ns = not significant.
Figure 3. Nesolicaftor (NES) rescues TGF-β1-induced reductions in CFTR function and ciliary beating in primary CFBE cells in vitro. (A) Fully differentiated ALI cultures of primary human CFBE cells homozygous for F508del were treated with elexacaftor (1 µM)/tezacaftor (5 µM)/ivacaftor (1 µM) (ETI), ETI + TGF-β1 (5 ng/mL), or ETI + TGF-β1 + NES (10 µM) for 24 h and CFTR-dependent ISC was measured in Ussing chambers. (B) Nesolicaftor reverses the reduction in ETI-corrected F508del CFTR function caused by TGF-β1. n = 8, 3 CF lungs. (C) TGF-β1 significantly reduces levels of CFTR mRNA expression in ETI-treated CFBE cells. CFTR mRNA levels are restored by nesolicaftor. n = 6, 3 CF lungs. (D) Amiloride-sensitive ISC (ENaC function) is significantly reduced by TGF-β1. Nesolicaftor increases ENaC function in the presence of TGF-β1. n = 8, 3 CF lungs. (E) TGF-β1 does not significantly affect UTP-stimulated ISC (CaCC function). Nesolicaftor significantly increases CaCC function in the presence of TGF-β1. n = 8, 3 CF lungs. (F) TGF-β1 causes a significant reduction in ciliary beat frequency (CBF) in ETI-treated F508del CFTR CFBE cells after 24 h. TGF-β1-induced reductions in CBF are reversed by nesolicaftor. n = 5, 3 CF lungs. Statistics: * p < 0.05, one-way ANOVA followed by Holm-Sidak (B,D,F) or Friedman test (C,E) after assessing normality with Shapiro-Wilk. ns = not significant.
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Figure 4. Nesolicaftor (NES) reverses TGF-β1-induced increases in IL-6 and IL-8 levels in primary CFBE cells in vitro. (A) Nesolicaftor rescues the increase in IL-6 protein levels induced by TGF-β1 in ETI-treated CFBE cells after 24 h. IL-6 expression was measured in the basolateral media. n = 6, 3 CF lungs. (B) Nesolicaftor led to a non-significant reduction in IL-8 protein levels induced by TGF-β1 in ETI-treated CFBE cells after 24 h. IL-8 levels were measured in the basolateral media. n = 6, 3 CF lungs. Statistics: * p < 0.05, Friedman test (A) or one-way ANOVA followed by Holm-Sidak (B) after assessing normality with Shapiro-Wilk. ns = not significant.
Figure 4. Nesolicaftor (NES) reverses TGF-β1-induced increases in IL-6 and IL-8 levels in primary CFBE cells in vitro. (A) Nesolicaftor rescues the increase in IL-6 protein levels induced by TGF-β1 in ETI-treated CFBE cells after 24 h. IL-6 expression was measured in the basolateral media. n = 6, 3 CF lungs. (B) Nesolicaftor led to a non-significant reduction in IL-8 protein levels induced by TGF-β1 in ETI-treated CFBE cells after 24 h. IL-8 levels were measured in the basolateral media. n = 6, 3 CF lungs. Statistics: * p < 0.05, Friedman test (A) or one-way ANOVA followed by Holm-Sidak (B) after assessing normality with Shapiro-Wilk. ns = not significant.
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Figure 5. Nesolicaftor (NES) improves miR-145-induced reductions in CFTR function and mRNA expression in primary CFBE cells in vitro. (A) Primary human CFBE cells homozygous for F508del were infected with a miR-145 lentiviral expression vector during differentiation. Fully differentiated ALI cultures overexpressing miR-145 were treated with elexacaftor (1 µM)/tezacaftor (5 µM)/ivacaftor (1 µM) (ETI) or ETI + NES (10 µM) for 24 h and CFTR-dependent ISC was measured in Ussing chambers. (B) Nesolicaftor significantly increases ETI-corrected F508del CFTR function in miR-145-overexpressing CFBE cells after 24 h. n ≥ 9, 3 CF lungs. (C) Nesolicaftor significantly increases expression levels of CFTR mRNA compared to ETI + miR-145 alone. n = 7, 3 CF lungs. (D,E) Amiloride-sensitive ISC (ENaC function) (D) and UTP-stimulated ISC (CaCC function) (E) are significantly increased by nesolicaftor in ETI-treated miR-145-overexpressing CFBE cells after 24 h. n ≥ 7, 3 CF lungs. Statistics: * p < 0.05, unpaired t-test (B,D), Wilcoxon test (C), or Mann-Whitney test (E) after assessing normality with Shapiro-Wilk.
Figure 5. Nesolicaftor (NES) improves miR-145-induced reductions in CFTR function and mRNA expression in primary CFBE cells in vitro. (A) Primary human CFBE cells homozygous for F508del were infected with a miR-145 lentiviral expression vector during differentiation. Fully differentiated ALI cultures overexpressing miR-145 were treated with elexacaftor (1 µM)/tezacaftor (5 µM)/ivacaftor (1 µM) (ETI) or ETI + NES (10 µM) for 24 h and CFTR-dependent ISC was measured in Ussing chambers. (B) Nesolicaftor significantly increases ETI-corrected F508del CFTR function in miR-145-overexpressing CFBE cells after 24 h. n ≥ 9, 3 CF lungs. (C) Nesolicaftor significantly increases expression levels of CFTR mRNA compared to ETI + miR-145 alone. n = 7, 3 CF lungs. (D,E) Amiloride-sensitive ISC (ENaC function) (D) and UTP-stimulated ISC (CaCC function) (E) are significantly increased by nesolicaftor in ETI-treated miR-145-overexpressing CFBE cells after 24 h. n ≥ 7, 3 CF lungs. Statistics: * p < 0.05, unpaired t-test (B,D), Wilcoxon test (C), or Mann-Whitney test (E) after assessing normality with Shapiro-Wilk.
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Bengtson, C.; Silswal, N.; Baumlin, N.; Yoshida, M.; Dennis, J.; Yerrathota, S.; Kim, M.; Salathe, M. The CFTR Amplifier Nesolicaftor Rescues TGF-β1 Inhibition of Modulator-Corrected F508del CFTR Function. Int. J. Mol. Sci. 2022, 23, 10956. https://doi.org/10.3390/ijms231810956

AMA Style

Bengtson C, Silswal N, Baumlin N, Yoshida M, Dennis J, Yerrathota S, Kim M, Salathe M. The CFTR Amplifier Nesolicaftor Rescues TGF-β1 Inhibition of Modulator-Corrected F508del CFTR Function. International Journal of Molecular Sciences. 2022; 23(18):10956. https://doi.org/10.3390/ijms231810956

Chicago/Turabian Style

Bengtson, Charles, Neerupma Silswal, Nathalie Baumlin, Makoto Yoshida, John Dennis, Sireesha Yerrathota, Michael Kim, and Matthias Salathe. 2022. "The CFTR Amplifier Nesolicaftor Rescues TGF-β1 Inhibition of Modulator-Corrected F508del CFTR Function" International Journal of Molecular Sciences 23, no. 18: 10956. https://doi.org/10.3390/ijms231810956

APA Style

Bengtson, C., Silswal, N., Baumlin, N., Yoshida, M., Dennis, J., Yerrathota, S., Kim, M., & Salathe, M. (2022). The CFTR Amplifier Nesolicaftor Rescues TGF-β1 Inhibition of Modulator-Corrected F508del CFTR Function. International Journal of Molecular Sciences, 23(18), 10956. https://doi.org/10.3390/ijms231810956

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