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Article

Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa

by
Peiying Ho
1,†,
Linh Chi Dam
1,2,†,
Wei Ren Ryanna Koh
1,3,
Rui Si Nai
1,
Qian Hui Nah
1,
Faeqa Binte Muhammad Rajaie Fizla
1,
Chia Ching Chan
1,4,
Thet Tun Aung
5,
Shin Giek Goh
6,7,
You Fang
6,7,
Zhining Lim
5,8,
Ming Guang Koh
5,8,
Michael Demott
9,
Yann Felix Boucher
8,10,
Benoit Malleret
5,
Karina Yew-Hoong Gin
6,7,11,
Peter Dedon
1,9 and
Wilfried Moreira
1,5,8,12,*
1
Antimicrobial Resistance Interdisciplinary Research Group (AMR IRG), Singapore-MIT Alliance for Research and Technology (SMART) Centre, Singapore 117576, Singapore
2
Signature Research Program in Cardiovascular & Metabolic Disorders, Duke-NUS Medical School, Singapore 169857, Singapore
3
Department of Medicine, National University Hospital, National University Health System, Singapore 119074, Singapore
4
Thrixen Pte Ltd., Singapore 048619, Singapore
5
Immunology Translational Research Programme, Department of Microbiology and Immunology, Yong Loon Lin School of Medicine, National University of Singapore, Singapore 117597, Singapore
6
Energy & Environmental Sustainability Solutions for Megacities (E2S2) Program, Campus for Research Excellence and Technological Enterprise (CREATE), Singapore 117576, Singapore
7
Department of Civil & Environmental Engineering, National University of Singapore, Singapore 117576, Singapore
8
Singapore Centre for Environmental Life Science Engineering (SCELSE), Singapore 637551, Singapore
9
Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
10
Saw Swee Hock School of Public Health, National University of Singapore, Singapore 117549, Singapore
11
Environmental Research Institute, National University of Singapore, Singapore 117576, Singapore
12
Life Science Institute, National University of Singapore, Singapore 117456, Singapore
*
Author to whom correspondence should be addressed.
These authors contributed equally to this work.
Int. J. Mol. Sci. 2024, 25(13), 7009; https://doi.org/10.3390/ijms25137009
Submission received: 8 May 2024 / Revised: 20 June 2024 / Accepted: 20 June 2024 / Published: 26 June 2024
(This article belongs to the Special Issue Bacteriophages Biology and Bacteriophage-Derived Technologies)

Abstract

Multidrug-resistant P. aeruginosa infections pose a serious public health threat due to the rise in antimicrobial resistance. Phage therapy has emerged as a promising alternative. However, P. aeruginosa has evolved various mechanisms to thwart phage attacks, making it crucial to decipher these resistance mechanisms to develop effective therapeutic strategies. In this study, we conducted a forward-genetic screen of the P. aeruginosa PA14 non-redundant transposon library (PA14NR) to identify dominant-negative mutants displaying phage-resistant phenotypes. Our screening process revealed 78 mutants capable of thriving in the presence of phages, with 23 of them carrying insertions in genes associated with membrane composition. Six mutants exhibited total resistance to phage infection. Transposon insertions were found in genes known to be linked to phage-resistance such as galU and a glycosyl transferase gene, as well as novel genes such as mexB, lasB, and two hypothetical proteins. Functional experiments demonstrated that these genes played pivotal roles in phage adsorption and biofilm formation, indicating that altering the bacterial membrane composition commonly leads to phage resistance in P. aeruginosa. Importantly, these mutants displayed phenotypic trade-offs, as their resistance to phages inversely affected antibiotic resistance and hindered biofilm formation, shedding light on the complex interplay between phage susceptibility and bacterial fitness. This study highlights the potential of transposon mutant libraries and forward-genetic screens in identifying key genes involved in phage-host interactions and resistance mechanisms. These findings support the development of innovative strategies for combating antibiotic-resistant pathogens.
Keywords: Pseudomonas aeruginosa; bacteriophage; bacteriophage resistance mechanisms; transposon mutagenesis Pseudomonas aeruginosa; bacteriophage; bacteriophage resistance mechanisms; transposon mutagenesis

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MDPI and ACS Style

Ho, P.; Dam, L.C.; Koh, W.R.R.; Nai, R.S.; Nah, Q.H.; Rajaie Fizla, F.B.M.; Chan, C.C.; Aung, T.T.; Goh, S.G.; Fang, Y.; et al. Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa. Int. J. Mol. Sci. 2024, 25, 7009. https://doi.org/10.3390/ijms25137009

AMA Style

Ho P, Dam LC, Koh WRR, Nai RS, Nah QH, Rajaie Fizla FBM, Chan CC, Aung TT, Goh SG, Fang Y, et al. Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa. International Journal of Molecular Sciences. 2024; 25(13):7009. https://doi.org/10.3390/ijms25137009

Chicago/Turabian Style

Ho, Peiying, Linh Chi Dam, Wei Ren Ryanna Koh, Rui Si Nai, Qian Hui Nah, Faeqa Binte Muhammad Rajaie Fizla, Chia Ching Chan, Thet Tun Aung, Shin Giek Goh, You Fang, and et al. 2024. "Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa" International Journal of Molecular Sciences 25, no. 13: 7009. https://doi.org/10.3390/ijms25137009

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