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Article

Transcriptomic Analyses Reveal That Coffea arabica and Coffea canephora Have More Complex Responses under Combined Heat and Drought than under Individual Stressors

1
Plant-Environment Interactions and Biodiversity Lab, Forest Research Centre (CEF), Associate Laboratory TERRA, School of Agriculture (ISA), University of Lisbon, 1349-017 Lisboa, Portugal
2
cE3c—Center for Ecology, Evolution and Environmental Changes and CHANGE—Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal
3
Linking Landscape, Environment, Agriculture and Food (LEAF), School of Agriculture (ISA), University of Lisbon, 1349-017 Lisboa, Portugal
4
Unidade de Geobiociências, Geoengenharias e Geotecnologias (GeoBioTec), Faculdade de Ciências e Tecnologia (FCT), Universidade NOVA de Lisboa (UNL), 2829-516 Caparica, Portugal
5
Centro Universitário do Norte do Espírito Santo (CEUNES), Departmento Ciências Agrárias e Biológicas (DCAB), Universidade Federal Espírito Santo (UFES), São Mateus 29932-540, ES, Brazil
6
Departamento de Biologia Vegetal, Universidade Federal Viçosa (UFV), Viçosa 36570-900, MG, Brazil
*
Authors to whom correspondence should be addressed.
Int. J. Mol. Sci. 2024, 25(14), 7995; https://doi.org/10.3390/ijms25147995 (registering DOI)
Submission received: 30 June 2024 / Revised: 14 July 2024 / Accepted: 19 July 2024 / Published: 22 July 2024
(This article belongs to the Special Issue Plants Responses to Climate Change)

Abstract

Increasing exposure to unfavorable temperatures and water deficit imposes major constraints on most crops worldwide. Despite several studies regarding coffee responses to abiotic stresses, transcriptome modulation due to simultaneous stresses remains poorly understood. This study unravels transcriptomic responses under the combined action of drought and temperature in leaves from the two most traded species: Coffea canephora cv. Conilon Clone 153 (CL153) and C. arabica cv. Icatu. Substantial transcriptomic changes were found, especially in response to the combination of stresses that cannot be explained by an additive effect. A large number of genes were involved in stress responses, with photosynthesis and other physiologically related genes usually being negatively affected. In both genotypes, genes encoding for protective proteins, such as dehydrins and heat shock proteins, were positively regulated. Transcription factors (TFs), including MADS-box genes, were down-regulated, although responses were genotype-dependent. In contrast to Icatu, only a few drought- and heat-responsive DEGs were recorded in CL153, which also reacted more significantly in terms of the number of DEGs and enriched GO terms, suggesting a high ability to cope with stresses. This research provides novel insights into the molecular mechanisms underlying leaf Coffea responses to drought and heat, revealing their influence on gene expression.
Keywords: climate changes; coffee; drought; functional analysis; heat; stress responses climate changes; coffee; drought; functional analysis; heat; stress responses

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MDPI and ACS Style

Marques, I.; Fernandes, I.; Paulo, O.S.; Batista, D.; Lidon, F.C.; Rodrigues, A.P.; Partelli, F.L.; DaMatta, F.M.; Ribeiro-Barros, A.I.; Ramalho, J.C. Transcriptomic Analyses Reveal That Coffea arabica and Coffea canephora Have More Complex Responses under Combined Heat and Drought than under Individual Stressors. Int. J. Mol. Sci. 2024, 25, 7995. https://doi.org/10.3390/ijms25147995

AMA Style

Marques I, Fernandes I, Paulo OS, Batista D, Lidon FC, Rodrigues AP, Partelli FL, DaMatta FM, Ribeiro-Barros AI, Ramalho JC. Transcriptomic Analyses Reveal That Coffea arabica and Coffea canephora Have More Complex Responses under Combined Heat and Drought than under Individual Stressors. International Journal of Molecular Sciences. 2024; 25(14):7995. https://doi.org/10.3390/ijms25147995

Chicago/Turabian Style

Marques, Isabel, Isabel Fernandes, Octávio S. Paulo, Dora Batista, Fernando C. Lidon, Ana P. Rodrigues, Fábio L. Partelli, Fábio M. DaMatta, Ana I. Ribeiro-Barros, and José C. Ramalho. 2024. "Transcriptomic Analyses Reveal That Coffea arabica and Coffea canephora Have More Complex Responses under Combined Heat and Drought than under Individual Stressors" International Journal of Molecular Sciences 25, no. 14: 7995. https://doi.org/10.3390/ijms25147995

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