Genome-Wide Association Studies Reveal That the Abietane Diterpene Isopimaric Acid Promotes Rice Growth through Inhibition of Defense Pathways
Abstract
:1. Introduction
2. Results
2.1. Isopimaric Acid Promotes the Growth of Nipponbare Rice
2.2. Genome-Wide Association Studies in Rice Following Induction Treatment with Isopimaric Acid
2.3. Haplotype Analysis and Tissue-Specific Expression of Candidate Genes
2.4. Expression Analysis and Subcellular Localization of OSASC1 and OSBUD13
3. Discussion
4. Materials and Methods
4.1. Plant Materials and Growth Conditions
4.2. Genome-Wide Association Studies
4.3. Candidate Gene Retrieval and Haplotype Analysis
4.4. Rna Extraction and Rt-Qpcr Analysis
4.5. Gene Cloning and Vector Construction
4.6. Subcellular Localization
4.7. Statistical Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Chr | Genes | Gene Name | Gene Position | Description |
---|---|---|---|---|
2 | LOC_Os02g37080 | Os02g0581300 | 22407730..22412305 | ASC1, putative, expressed |
2 | LOC_Os02g37130 | Os02g0582200 | 22445010..22448965 | expressed protein |
2 | LOC_Os02g37250 | Os02g0583700 | 22509550..22510620 | hypothetical protein |
2 | LOC_Os02g37260 | Os02g0584200 | 22529056..22531379 | hypothetical protein |
2 | LOC_Os02g37309 | Os02g0584900 | 22556916..22558121 | expressed protein |
2 | LOC_Os02g37320 | Os02g0585100 | 22558881..22559609 | heavy metal-associated domain containing protein, expressed |
2 | LOC_Os02g37410 | / | 22595368..22596778 | expressed protein |
2 | LOC_Os02g37430 | Os02g0586500 | 22602418..22605754 | LSM domain-containing protein, expressed |
2 | LOC_Os02g37440 | Os02g0586600 | 22607190..22609208 | expressed protein |
2 | LOC_Os02g37460 | / | 22614291..22615805 | retrotransposon protein, putative, Ty3-gypsy subclass |
2 | LOC_Os02g37500 | Os02g0587300 | 22636061..22636963 | hypothetical protein |
2 | LOC_Os02g37540 | Os02g0587800 | 22650959..22651932 | virulence factor, pectin lyase fold family protein |
2 | LOC_Os02g37620 | / | 22702356..22705354 | transposon protein, putative, CACTA, En/Spm sub-class |
2 | LOC_Os02g37654 | Os02g0589000 | 22722799..22733189 | lecithine cholesterol acyltransferase, putative, expressed |
2 | LOC_Os02g37750 | Os02g0589900 | 22761941..22778592 | lecithine cholesterol acyltransferase, putative, expressed |
2 | LOC_Os02g37760 | Os02g0590000 | 22782750..22783121 | diacylglycerol acyltransferase domain containing protein |
2 | LOC_Os02g37790 | / | 22797600..22798855 | retrotransposon protein, putative, unclassified, expressed |
Chr | Genes | Gene Name | Gene Position | Description |
---|---|---|---|---|
8 | LOC_Os08g07870 | / | 4424985..4429988 | retrotransposon protein, putative, unclassified, expressed |
8 | LOC_Os08g07880 | Os08g0176100 | 4430918..4434203 | phosphopantothenate–cysteine ligase, putative, expressed |
8 | LOC_Os08g07930 | Os08g0176633 | 4468741..4472698 | resistance protein, putative, expressed |
8 | LOC_Os08g08080 | Os08g0178300 | 4586478..4591217 | BUD13, putative, expressed |
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Luo, X.; Bai, L.; Huang, J.; Peng, L.; Hua, J.; Luo, S. Genome-Wide Association Studies Reveal That the Abietane Diterpene Isopimaric Acid Promotes Rice Growth through Inhibition of Defense Pathways. Int. J. Mol. Sci. 2024, 25, 9161. https://doi.org/10.3390/ijms25179161
Luo X, Bai L, Huang J, Peng L, Hua J, Luo S. Genome-Wide Association Studies Reveal That the Abietane Diterpene Isopimaric Acid Promotes Rice Growth through Inhibition of Defense Pathways. International Journal of Molecular Sciences. 2024; 25(17):9161. https://doi.org/10.3390/ijms25179161
Chicago/Turabian StyleLuo, Xiaomeng, Liping Bai, Jiaqi Huang, Luying Peng, Juan Hua, and Shihong Luo. 2024. "Genome-Wide Association Studies Reveal That the Abietane Diterpene Isopimaric Acid Promotes Rice Growth through Inhibition of Defense Pathways" International Journal of Molecular Sciences 25, no. 17: 9161. https://doi.org/10.3390/ijms25179161