PRPH2-Related Retinal Dystrophies: Mutational Spectrum in 103 Families from a Spanish Cohort
Abstract
:1. Introduction
2. Results
2.1. Ophthalmic Characteristics of PRPH2 Patients
2.2. Mutational Spectrum of PRPH2 Variants in Our Spanish Cohort
Novel Disease-Causing Variants and PRPH2-VUS Identified in Our Cohort
2.3. Genotype–Phenotype Correlations
3. Discussion
Study Limitations
4. Materials and Methods
4.1. Subjects
4.2. Clinical Classification
4.3. Molecular Diagnosis and Analysis of Variants
4.4. Haplotype Analysis
4.5. Statistical Analysis
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Patients’ Characteristics | Non-RP | RP | A | |
---|---|---|---|---|
MD | CD/CRD | |||
TOTAL (%) | 103 (57) | 28 (15) | 35 (19) | 16 (9) |
Male (no. total) | 43 | 14 | 11 | 6 |
Female (no. total)c | 60 | 14 | 24 | 9 |
AAO (no. patients with data/total) | 51/103 | 16/28 | 24/35 | - |
Median | 40 | 41 | 24.5 | - |
Range | 8–65 | 5–62 | 8–74 | - |
VAL, no. patients with data | 41 | 13 | 16 | - |
Median | 40 | 42 | 36.5 | - |
Range, years | 8–65 | 5–62 | 12–74 | - |
VFL, no. patients with data | 13 | 10 | 19 | - |
Median | 45 | 46.5 | 35 | - |
Range, years. | 25–60 | 5–65 | 12–74 | - |
NB, no. patients with data | 16 | 11 | 19 | - |
Median | 40.5 | 35 | 24 | - |
Range, years. | 20–65 | 25–62 | 8–51 | - |
Exon | Nucleotide Change | Protein Change | Protein Domain | ACMG Classification | Type of Variant | Allele Count (%) | Het. | Homo. | Double Diagnosis | References |
---|---|---|---|---|---|---|---|---|---|---|
1 | c.52C>T | p.Gln18* | N-terminus | LP (PVS1, PM2) | nonsense | 4 (3.85) | 4 | 0 | 0 | Del Pozo-Valero, 2022 [20] |
1 | c.112G>A | p.Gly38Arg | 1st TMD | LP (PM2, PP1, PP2, PP3) | missense | 1 (0.96) | 1 | 0 | 0 | This study |
1 | c.113G>A | p.Gly38Glu | 1st TMD | LP (PM2, PP2, PP3) | missense | 2 (1.92) | 2 | 0 | 0 | This study |
1 | c.122T>C | p.Leu41Pro | 1st TMD | LP (PM2, PP3, PP2) | missense | 5 (4.81) | 5 | 0 | 0 | Peeters, 2021 [16]; Bianco, 2023 [21] |
1 | c.136C>T | p.Arg46* | D1-loop | P (PVS1, PM2, PP5) | nonsense | 2 (1.92) | 2 | 0 | 0 | Meins, 1993 [22] |
1 | c.205del | p.Val69Cysfs*30 | 2nd TMD | P (PVS1, PM2, PP5) | frameshift | 1 (0.96) | 1 | 0 | 0 | Manes, 2015 [23] |
1 | c.290G>A | p.Trp97* | C-loop | P (PVS1, PM2, PP5) | nonsense | 1 (0.96) | 1 | 0 | 0 | Antonelli, 2022 [24] |
1 | c.421T>C | p.Tyr141His | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Trujillo, 2001 [25] |
1 | c.424C>T | p.Arg142Trp | D2-loop | LP (PM1, PM2, PM5, PP2, PP5) | missense | 4 (3.85) | 4 | 0 | 0 | Hoyng, 1996 [26] |
1 | c.441del | p.Gly148Alafs*5 | D2-loop | P (PVS1, PM2, PP5) | frameshift | 1 (0.96) | 1 | 0 | 0 | Trujillo, 1998 [27] |
1 | c.469G>A | p.Asp157Asn | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Jacobson, 1996 [28] |
1 | c.493T>C | p.Cys165Arg | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Simonelli, 2007 [29] |
1 | c.499G>A | p.Gly167Ser | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 7 (6.73) | 7 | 0 | 0 | Testa, 2005 [30] |
1 | c.514C>T | p.Arg172Trp | D2-loop | P (PM2, PM5, PP3, PP2, PP5) | missense | 2 (1.92) | 2 | 0 | 0 | Wells, 1993 [31] |
1 | c.515G>A | p.Arg172Gln | D2-loop | LP (PM1, PM2, PM5, PP2, PP5) | missense | 2 (1.92) | 2 | 0 | 0 | Wells, 1993 [31] |
1 | c.520T>A | p.Trp174Arg | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Peeters, 2021 [16] |
1 | c.533A>G | p.Gln178Arg | D2-loop | LP (PM1, PM2, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Sohocki, 2001 [32] |
1 | c.536G>T | p.Trp179Leu | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Fernandez-San Jose, 2015 [18] |
1 | c.556G>A | p.Asp186Asn | D2-loop | LP (PM1, PM2, PM5, PP2, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Kitiratschky, 2011 [33] |
1 | c.562del | p.Ser188Profs*68 | D2-loop | LP (PVS1, PM2) | frameshift | 4 (3.85) | 4 | 0 | 0 | This study |
1 | c.567dupC | p.Lys190Glnfs*28 | D2-loop | LP (PVS1, PM2) | frameshift | 1 (0.96) | 1 | 0 | 0 | This study |
1 | c.568A>G | p.Lys190Glu | D2-loop | LP (PM1, PM2, PP2) | missense | 1 (0.96) | 1 | 0 | 0 | Falsini, 2022 [34] |
IVS1 | c.582-1G>A | p.? | - | P (PVS1, PM2, PP5) | splicing | 2 (1.92) | 2 | 0 | 0 | Fernandez-San Jose, 2015 [18] |
2 | c.(581+1_582-1)_(828+1_829-1)del | p.? | D2-loop to 4th TMD | LP (PVS1, PM2) | CNV | 1 (0.96) | 1 | 0 | 0 | Weisschuh, 2020 [35] |
2 | c.584G>A | p.Arg195Gln | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Alapati, 2014 [36] |
2 | c.584G>T | p.Arg195Leu | D2-loop | P (PM1, PM2, PM5, PP1, PP2, PP5) | missense | 4 (3.85) | 4 | 0 | 0 | Yanagihashi, 2003 [37] |
2 | c.605G>A | p.Gly202Glu | D2-loop | LP (PM1, PM2, PP2, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Maggi, 2021 [38] |
2 | c.609_625del | p.Tyr204Profs*8 | D2-loop | P (PVS1, PM2, PP5) | frameshift | 1 (0.96) | 1 | 0 | 0 | Trujillo, 1998 [27] |
2 | c.623del | p.Gly208Alafs*48 | D2-loop | LP (PVS1, PM2) | frameshift | 1 (0.96) | 1 | 0 | 0 | This study |
2 | c.623G>A | p.Gly208Asp | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5, PS4) | missense | 7 (6.73) | 4 | 2 | 1 | Kohl, 1997 [39] |
2 | c.625G>A | p.Val209Ile | D2-loop | LP (PM1, PM2, PM5, PP2, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Coco, 2010 [40] |
2 | c.626del | p.Val209Alafs*47 | D2-loop | P (PVS1, PM2, PP5) | frameshift | 1 (0.96) | 1 | 0 | 0 | Martin-Merida, 2019 [19] |
2 | c.628C>T | p.Pro210Ser | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Kemp, 1994 [41] |
2 | c.631T>C | p.Phe211Leu | D2-loop | LP (PM1, PM2, PP2, PP3, PP5, PS1) | missense | 1 (0.96) | 1 | 0 | 0 | Manes, 2015 [23] |
2 | c.633_656del | p.Phe211_Pro219delinsLeu | D2-loop | LP (PM1, PM2, PM4) | inframe | 1 (0.96) | 1 | 0 | 0 | This study |
2 | c.634A>G | p.Ser212Gly | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5, PS4) | missense | 4 (3.85) | 4 | 0 | 0 | Farrar, 1992 [42] |
2 | c.637T>C | p.Cys213Arg | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Payne, 1998 [43] |
2 | c.637T>G | p.Cys213Gly | D2-loop | LP (PM1, PM2, PM5, PP2, PP3) | missense | 1 (0.96) | 1 | 0 | 0 | This study |
2 | c.638G>T | p.Cys213Phe | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 2 (1.92) | 2 | 0 | 0 | Villaverde, 2007 [44] |
2 | c.641G>A | p.Cys214Tyr | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 2 (1.92) | 2 | 0 | 0 | Trujillo, 2001 [25] |
2 | c.643A>T | p.Asn215Tyr | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Martin-Merida, 2018 [17] |
2 | c.646C>T | p.Pro216Ser | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | Fishman, 1994 [45] |
2 | c.649_650insTAGCTGCTGCAATCCTA | p.Ser217Ilefs*45 | D2-loop | LP (PVS1, PM2) | frameshift | 3 (2.91) | 3 | 0 | 0 | This study |
2 | c.653C>A | p.Ser218* | D2-loop | P (PVS1, PM2, PP5) | nonsense | 1 (0.96) | 1 | 0 | 0 | Reeves, 2020 [46] |
2 | c.658C>G | p.Arg220Gly | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 1 (0.96) | 1 | 0 | 0 | ClinVar |
2 | c.658C>T | p.Arg220Trp | D2-loop | P (PM1, PM2, PM5, PP2, PP3, PP5) | missense | 3 (2.91) | 3 | 0 | 0 | Payne, 1998 [43] |
2 | c.658del | p.Arg220Glyfs36* | D2-loop | P (PVS1, PM2, PP5) | frameshift | 1 (0.96) | 1 | 0 | 0 | Boon, 2007 [47] |
2 | c.660_665del | p.Pro221_Cys222del | D2-loop | LP (PM1, PM2, PM4, PP5) | inframe | 6 (5.77) | 6 | 0 | 0 | Martin-Merida, 2019 [19] |
2 | c.708C>A | p.Tyr236* | D2-loop | LP (PVS1, PM2) | nonsense | 1 (0.96) | 1 | 0 | 0 | LOVD |
2 | c.708C>G | p.Tyr236* | D2-loop | P (PVS1, PM2, PP5) | nonsense | 1 (0.96) | 1 | 0 | 0 | Strom, 2012 [48] |
2 | c.734_737dupTGTG | p.Trp246Cysfs*56 | D2-loop | LP (PVS1, PM2) | frameshift | 1 (0.96) | 1 | 0 | 0 | Del Pozo-Valero, 2022 [20] |
2 | c.745G>C | p.Gly249Arg | D2-loop | LP (PM1, PM2, PM5, PP1, PP2, PP3) | missense | 1 (0.96) | 1 | 0 | 0 | This study |
2 | c.809_817delinsCCTTCGAGGTA | p.Leu270Profs*9 | 4th TMD | LP (PVS1, PM2) | frameshift | 1 (0.96) | 1 | 0 | 0 | This study |
2 | c.818G>A | p.Trp273* | 4th TMD | LP (PVS1, PM2, PP1) | nonsense | 1 (0.96) | 1 | 0 | 0 | This study |
3 | c.904G>A | p.Glu302Lys | C-terminus | VUS (PM2, PP2, BP4) | missense | 1 (0.96) | 1 | 0 | 0 | ClinVar |
3 | c.914G>A | p.Gly305Asp | C-terminus | LP (PM2, PP2, PP5) | missense | 2 (1.92) | 2 | 0 | 0 | Felbor, 1997 [49] |
Variant | Chinese Cohort (Wang, 2023) [53] (n = 15) | Japanese Cohort (Oishi, 2021) [56] (n = 30) | USA Cohort (Reeves, 2020) [46] (n = 161) | Spanish Cohort (This Study) (n = 103) |
---|---|---|---|---|
c.122T>C (p.Leu41Pro) | Not reported | Not reported | Not reported | 4.8% |
c.424C>T (p.Arg142Trp) | Not reported | 13.3% | 3.1% | 3.9% |
c.499G>A (p.Gly167Ser) | Not reported | 6.7% | 0.6% | 6.7% |
c.514C>T (p.Arg172Trp) | 6.7% | 13.3% | 5.6% | 1.9% |
c.599T>A (p.Val200Glu) | Not reported | 10.0% | Not reported | Not found |
c.623G>A (p.Gly208Asp) | Not reported | Not reported | 0.6% | 6.7% |
c.660_665del (p.Pro221_Cys222del) | Not reported | Not reported | Not reported | 5.8% |
c.828+3A>T (p.?) | Not reported | Not reported | 17.4% | Not found |
c.914G>A (p.Gly305Alafs*19) | 33.3% | Not reported | Not reported | 1.9% |
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Fernández-Caballero, L.; Martín-Merida, I.; Blanco-Kelly, F.; Avila-Fernandez, A.; Carreño, E.; Fernandez-San Jose, P.; Irigoyen, C.; Jimenez-Rolando, B.; Lopez-Grondona, F.; Mahillo, I.; et al. PRPH2-Related Retinal Dystrophies: Mutational Spectrum in 103 Families from a Spanish Cohort. Int. J. Mol. Sci. 2024, 25, 2913. https://doi.org/10.3390/ijms25052913
Fernández-Caballero L, Martín-Merida I, Blanco-Kelly F, Avila-Fernandez A, Carreño E, Fernandez-San Jose P, Irigoyen C, Jimenez-Rolando B, Lopez-Grondona F, Mahillo I, et al. PRPH2-Related Retinal Dystrophies: Mutational Spectrum in 103 Families from a Spanish Cohort. International Journal of Molecular Sciences. 2024; 25(5):2913. https://doi.org/10.3390/ijms25052913
Chicago/Turabian StyleFernández-Caballero, Lidia, Inmaculada Martín-Merida, Fiona Blanco-Kelly, Almudena Avila-Fernandez, Ester Carreño, Patricia Fernandez-San Jose, Cristina Irigoyen, Belen Jimenez-Rolando, Fermina Lopez-Grondona, Ignacio Mahillo, and et al. 2024. "PRPH2-Related Retinal Dystrophies: Mutational Spectrum in 103 Families from a Spanish Cohort" International Journal of Molecular Sciences 25, no. 5: 2913. https://doi.org/10.3390/ijms25052913
APA StyleFernández-Caballero, L., Martín-Merida, I., Blanco-Kelly, F., Avila-Fernandez, A., Carreño, E., Fernandez-San Jose, P., Irigoyen, C., Jimenez-Rolando, B., Lopez-Grondona, F., Mahillo, I., Martin-Gutierrez, M. P., Minguez, P., Perea-Romero, I., Del Pozo-Valero, M., Riveiro-Alvarez, R., Rodilla, C., Rodriguez-Peña, L., Sánchez-Barbero, A. I., Swafiri, S. T., ... Ayuso, C. (2024). PRPH2-Related Retinal Dystrophies: Mutational Spectrum in 103 Families from a Spanish Cohort. International Journal of Molecular Sciences, 25(5), 2913. https://doi.org/10.3390/ijms25052913