1. Introduction
Osteoarthritis (OA) is a chronic degenerative disorder of the joint associated with age, which can cause debilitating alterations in joint mobility, long-term pain, and an overall decrease in patients’ quality of life. Having OA is associated with an up to 1.6-fold higher risk of all-cause mortality than the general population [
1]. OA is typified by hallmark anatomical changes to affected joints, including cartilage degradation, sub-chondral bone thickening, osteophyte formation and, eventually, hypertrophy of the joint capsule. Changes in gross anatomy are underpinned by molecular mechanisms [
2]. Briefly, cartilage destruction can occur following traumatic injury or chronic wear and tear. The destruction of cartilage can cause the death of chondrocytes within the lesion and the release of extracellular matrix components as damage-associated molecular patterns. These events induce an increase in pro-inflammatory signalling and cytokine release in the surrounding cells. In part, this can lead to an increase in the expression and activation of matrix-metalloproteinases (MMP), such as MMP-13, which further exacerbate cartilage breakdown. Alongside this, increases in pro-inflammatory signalling also reduces the production of cartilage components from chondrocytes which have not undergone death [
3]. Overall, a decrease in negatively charged cartilage proteoglycans results in decreased retention of water within the tissue [
4], and subsequently increases tissue stiffness. The outcome of this is a reduced ability of the joint to withstand compressive loads [
5]. Greater cartilage stiffness reduces chondrogenic gene expression and puts the individual at risk of future injury [
6]. Collectively, these processes, repeated over a sufficiently long period of time, compromise the balance of catabolic and anabolic mechanisms regulating joint homeostasis and eventually present as OA. Alongside age, post-traumatic joint injury and hormonal changes, typically associated with menopause, dramatically increase the risk of an individual developing OA [
7]. Unfortunately, to date, there are no long-term curative therapies available in the treatment of OA. However, an area of growing pre-clinical work in this regard is the use of extracellular vesicles (EVs) as a tissue regenerative therapy [
8].
EVs are biological nanoparticles consisting of cargo either encapsulated within or presented on the surface of a lipid membrane shell. EVs are mediators of paracellular communication and are released constitutively from virtually all cells of the body [
9]. EVs’ size dictates their classification, with the smallest EVs being classed as exosomes, intermediate-sized EVs (150 nm–1 µm) as microvesicles and the largest as apoptotic bodies. Each classification of EV is underpinned by a unique mechanism of biogenesis. For example, microvesicles are generated via the outward blebbing of the plasma membrane of cells in response to changes in intracellular calcium levels. In contrast, exosomes are generated following the inward budding of the endosomal membrane in the luminal space of multivesicular endosomes undergoing maturation [
10]. Importantly, EVs are heterogeneous, and their contents include a range of proteins, cytokines, nucleic acids and lipid mediators. The proportion of EVs carrying a certain cargo, whether the cargo is encapsulated or presented on the EV surface, and the amounts of exosomes versus microvesicles is wholly dependent on the phenotype of the cell of origin. Generally, EVs generated from a pro-inflammatory cell will have pro-inflammatory effects and vice versa [
11]. However, there are exceptions to this; for example, EVs from TNF-α stimulated neutrophils can exert a pro-resolving effect via Annexin-A1 in the context of inflammatory arthritis [
12]. There is good evidence for the functional effects of EVs in a range of homeostatic processes as well as in a variety of diseases and pathological conditions.
EVs from a variety of sources have been used in pre-clinical trials to attenuate the osteoarthritic phenotype. These tools offer advantages over conventional therapies, for example, the ability to promote targeted delivery and the protection of therapeutic payloads from enzyme-rich microenvironments (Reviewed in [
8]). The limitations of cell-based therapies include poor localization to the site of interest and an inability to control cell fate in the diseased microenvironment. MSC-EVs are able to promote a greater resolving phenotype than the parent cells in a model of murine OA [
13]. In fact, in a metabolically induced model of rat OA, MSC infusion further exacerbated cartilage degradation whereas MSC-EVs did not [
14].
Exogenously administered chondrocyte-derived EVs have a potent pro-chondrogenic and protective phenotype in OA. These EVs have been shown to promote type II collagen and aggrecan production in chondrocyte cultures and attenuate the extent of synovitis in a mouse model of OA [
15,
16]. Endogenous chondrocyte EVs are present within the cartilage and the proteome of these EVs becomes altered during OA [
17]. Both Liu et al. and Ni et al. have shown that EVs from IL-1β-stimulated chondrocytes promote catabolic gene expression in recipient healthy chondrocytes and exacerbate cartilage degeneration [
15,
16]. Current data suggest that chondrocyte EVs are detected in articular cartilage and these microstructures may regulate chondrocyte phenotype in health and disease [
11]. However, their exact role, mechanism of action and how this becomes perturbed in the disease state are poorly understood. Herein, we aim to interrogate the factors that may influence the biology of EVs from chondrocytes, how this may change during the pathogenic shift from health to disease and why this is relevant to a chronic degenerative disorder like OA.
3. Discussion
We report here the first characterization of EVs isolated from the matrix of the aggregate 3D chondrocyte cultures. Previous studies have characterized EVs from chondrocyte supernatants. As anticipated, from our data, these supernatant EVs had very little effect [
22]. Herein, we isolated EVs from 3D chondrocyte cultures via mechanical disruption and, using a variety of techniques, we validated these EVs and their sequestration within the cartilage ECM. There is not a wealth of data in this area. Notably, Rosenthal et al. analysed the proteome of articular cartilage vesicles between healthy and osteoarthritic cartilage, by both mechanical disruption and enzymatic digestion of the cartilage, to obtain EVs [
17].
The culture of cells in 3D-utilizing scaffolds and bioreactors is known to boost EV yield and functionality [
23]; we found this to be the case when generating EVs from chondrocytes in 3D pellet culture. While it is known that EVs isolated from chondrocytes are pro-chondrogenic [
8,
15], we provide novel evidence that chondrocyte EVs from a 3D culture exert a far more potent pro-chondrogenic effect than those from 2D monolayers. Hence, this is the first report pertaining to the augmenting properties of 3D EVs on chondrocytes. Similar findings have been observed with skeletal muscle cells cultured in 3D, which had a greater expression of markers indicative of differentiation and maturation compared to those cultured in 2D [
24], as well as osteoblasts and MSCs [
25,
26]. Indeed, MSCs cultured in 3D have been found to generate EVs with far greater neuronal growth properties [
27]. It has also been shown that EVs generated from 3D cultures replicate the cargo profile of EVs in vivo more faithfully than those isolated from 2D cells. Furthermore, Jalilian et al. demonstrated an increased yield of EVs isolated from MSCs in 3D culture conditions [
27]. Indeed, we similarly demonstrated an increase in EV yield from chondrocytes in 3D versus 2D. Other reports have utilised 3D cell growth as a means of increasing EV yield from cells towards a therapeutic goal [
28].
How chondrogenic differentiation affects EV yield has rarely been studied. Rosenthal et al. demonstrated that the treatment of chondrocytes with rapamycin induces increased EV release, which was attributed to a modulatory effect on autophagy [
29]. We reason that the rapamycin-induced bolstering of EV production might be an effect of increased chondrogenic gene expression. Indeed, there is evidence of rapamycin not only promoting chondrogenic gene expression but offering protective benefits with regards to cartilage degradation during OA [
30]. We found that 2D chondrocytes cultured in ITS have greater EV output than those cultured with FBS. Similarly, the EV yield in cells grown in 3D is greater than that of 2D culture. Both methods of promoting greater chondrogenic gene expression also increase chondrocyte EV yield, which suggests the existence of a feedback loop between the two processes. Further evidence for this functional relationship was observed when chondrocytes were treated with cytokines. Unexpectedly, we observed an increase in catabolic gene expression in 3D cultures treated with TGF-β; however, the current literature indicates that this response is not completely unexpected, as it demonstrates a remodelling phenotype. Plaas et al. demonstrated that the synergetic increase in both TGF-β and ADAMTS5 are essential for efficient pericellular matrix turnover [
31]. Given the increased proteoglycan expression in TGF-β treated cultures, as seen by alcian blue staining (
Supplementary Figure S1), we believe this is also the case in our experimental conditions. Whilst 24 h of IL-1β treatment of 2D and 3D cells had no effect on EV yield, an increase was observed in 3D cultures treated with TGF-β; a well-studied potent promoter of chondrogenesis. The importance of TGF-β is seen in conditional knockouts of
tgfβr2 in articular chondrocytes as well as proteins downstream of TGF-βR2, which causes an OA-like phenotype in these mice [
32,
33]. Notably, genome-wide association studies in humans have revealed links between the TGF-β superfamily and OA [
34]. As we have shown, cues which promote chondrogenic gene expression promote an increased EV yield from chondrocytes, which includes TGF-β. Interestingly, this was only observed in 3D cells: we cannot exclude higher receptor levels or signalling clusters in these culture settings. Our results indicate that the production of EVs is matched to the extent of cartilage matrix, which is dictated by pro- and anti-chondrogenic conditions, such as TGF-β stimulation vs. the catabolic stimulus of IL-1β. In this instance 24 h TGF-β treatment did not directly increase EV release in 2D monolayers. The increased yield of EVs from mechanically dissociated 3D cultures treated with TGF-β is likely related to the greater ECM accumulation in these cultures, as observed with Alcian blue staining (
Supplementary Figure S1). This is in line with the current body of work, which demonstrates that chondrocyte EVs are sequestered within the cartilage matrix. Therefore, not only do we report that large amount of EVs remain sequestered within cartilage ECM, but we propose that they represent a previously underappreciated yet functional cartilage component.
We have also observed an integral role of β1-integrin in the uptake of chondrocyte-EVs. β1-integrin is the most predominantly expressed integrin in chondrocytes and it is essential in supporting the focal adhesion of these cells to cartilage components. Through this action, as part of the αβ-integrin heterodimers, β1-integrin promotes chondrocyte survival, differentiation and proliferation, inhibits apoptosis and provides cues which regulate matrix remodelling [
35]. A large range of αβ1-integrin ligands exist; for example, the matrix protein fibronectin binds α3β1, α4β1, α5β1 and αVβ1 integrins, while integrins such as α1β1, α2β1, α10β1 and α11β1 display preferential binding to type II collagen [
36]. Importantly, integrins mediate the adhesion of chondrocytes with the rich ECM surrounding them. Integrin activity is also involved in converting the mechanical forces applied to the cartilage into cellular signalling responses in chondrocytes. Periodical mechanical loads facilitate the fibronectin-α5β1 bond. Periodical mechanical forces promote the downstream activation of protein kinase C signalling and cause hyperpolarisation of the chondrocyte membrane. A variety of β1-mediated mechanotransducive signalling pathways have been reported to date. These include β1-Src-GIT ArfGAP1 (GIT1) and β1-Ca2+/calmodulin-dependent protein kinase II (CaMKII) signalling pathways. Functionally, mechanical inputs via integrins are responsible for chondrocyte proliferation and matrix synthesis. Alongside traditional ‘outside-in’ signalling mediated by integrins, these molecules are subject to ‘inside-out’ signalling, which can alter the binding affinity, ability to cluster and combination of integrin dimers, which allows for the dynamic regulation of chondrocyte interactions with the ECM. During OA, changes to the components and structure of cartilage lead to alterations in the integrin-mediated signalling pathways inducing the increased production of cartilage-degrading molecules, such as ADAMTS-5 and MMP-13 [
37]. Given the vital role of β1-integrin in the adhesion of chondrocytes, we wondered whether chondrocyte-derived EVs shared the same dependency on β1-integrin for adhesion to matrix components and, as a result, uptake by recipient cells.
To validate this hypothesis, firstly, we confirmed the expression of β1-integrin on 3D EVs using nano-flow cytometry and, secondly, we demonstrated a reduction in 3D EV uptake after β1-integrin blockade. The involvement of β1-integrin is also functionally present when we investigated the level of EV uptake among cells cultured in FBS vs. ITS. The uptake of these EVs is greater in cells supplemented with ITS. As shown, the adhesion of these EVs is reliant on the expression of β1-integrin and its interactions with matrix components. Therefore, cells with greater chondrogenic gene expression, and hence, greater cartilage gene expression, display greater EV adhesion and uptake. However, despite the importance of the β1-integrin in focal adhesion, the binding of 3D-derived EVs to chondrocytes did not alter the cytoskeletal levels of F-actin, as quantified with phalloidin staining (
Supplementary Figure S3). Interestingly, there was an increase in the total number of nuclei per field of view following 24 h of EV treatment. These data suggest an increase in the proliferation of chondrocytes treated with 3D-derived EVs. These data further support the involvement of β1-integrin in the uptake of these EVs, as it has previously been shown that the activation of the β1-integrin on chondrocytes promotes proliferation [
35]. However, further work is required to elucidate the exact mechanism by which this occurs. These data substantiate the notion that chondrocyte EVs are sequestered within the cartilage via interactions with adhesion molecules and matrix components. These interactions are key in mediating the uptake of these chondrogenic EVs and vital for maintaining chondrocyte and overall cartilage health.
Through a comparison of the conditions in which we cultured chondrocytes, we can create a picture of how the chondrocyte–EV–cartilage axis may become perturbed in a chronic degenerative disease like OA. It can be speculated that, in diseased cartilage, the number of EVs is reduced following chondrocyte death. Of the remaining chondrocytes, alterations in the phenotype away from homeostasis further reduce EV production and the chondrogenic potency of those EVs is also reduced, much like the changes which occur between cells cultured in FBS or ITS. It is also likely that changes to the make-up and biomechanical properties of the diseased cartilage further hinder the ability to generate and uptake EVs. Over a substantial period of time, these changes contribute to a negative feedback loop, further exacerbating pathogenicity within the cartilage.
In the context of OA, cartilage degradation and chondrocyte death lead to the production of molecules which reduce chondrogenic gene expression across the chondrocyte population. These further feed back into a decrease in chondrogenic gene expression [
3]. These data suggest that paracrine communication among chondrocytes via EVs is key in this process. Chondrocytes with reduced chondrogenic gene expression produce a lower number of EVs and the chondrogenic potential of these EVs is also reduced. Others have used a combination of biologically existing EVs, either in combination with additional synthetic payloads or engineered to deliver a variety of proteins and nucleic acids [
8]. Others have used autologous-plasma-derived EVs to promote chondrogenesis in vitro. Some efficacy was demonstrated for autologous plasma EVs in a small clinical trial for temporal bone cavity inflammation, as well as a variety of pre-clinical models. Chondrocyte EV treatment within the joint presents a novel modality of promoting cartilage healing in patients. Indeed, pre-clinical models utilising chondrocyte EVs as a treatment strategy have shown efficacy in alleviating cartilage degradation [
38]. Another interesting application of the work herein is in the use of hydrogels. Hydrogels can be used as carriers for drug transportation and can be implanted into the affected area by injection and surgery, improving the efficacy of the given drug. Hydrogels can also be used as scaffolds to mediate the adhesion, proliferation and differentiation of stem cells in cell-based therapies [
39]. Curiously, in either of these conditions, this current body of work suggests that combining such hydrogels with chondrocyte EVs would bolster their chondroprotective effects in OA. However, a more detailed understanding of the biology governing chondrocyte EV migration and uptake and how they influence cartilage health is required before novel EV-based therapies can be designed for arthropathies.
4. Materials and Methods
4.1. C28/I2 Chondrocyte Cell Line Culture
C28/I2 human chondrocyte cell lines were obtained with thanks from Prof. Mary Goldring’s Lab. C28/I2 was grown in complete media comprising Dulbecco’s Modified Eagle Medium/1:1 Hams F-12 Nutrient Mixture (DMEM/F-12) with GlutMAX (Thermofisher Scientific, Cambridge, UK) +10% non-heat-inactivated FBS (Thermofisher Scientific Cambridge, UK) with 1% penicillin and streptomyosin (P/S; Sigma-Aldrich, Gillingham, UK).
4.2. 2D and 3D Formats of Chondrocyte Culture
C28/I2 cells at 80% confluence were detached from T75 flasks following trypsinisation, as described above. Chondrocyte monolayers were cultured by adding 3 × 105 chondrocytes to a 6-well plate in complete media for 24 h. Pellet cultures were generated by taking 3 × 105 chondrocytes in 1 mL of complete media and adding the cell suspension to a 15 mL falcon before centrifuging at 300× g for 5 min to pellet the cells, and then placing this upright for 24 h with lids untightened to allow for adequate gaseous exchange.
For all cultures, complete media was removed after 24 h and the cultures were washed with DPBS−/−. Following this, serum-free and phenol-red-free DMEM/F-12 (Thermofisher Scientific, Cambridge, UK) with 1:100 Insulin-Transferrin-Selenium (ITS; Sigma-Aldrich, Gillingham, UK) and 1% P/S was added and cultures were incubated for a further 24 h. All cultures were stimulated as detailed below. In some experiments, the last 48 h of culturing was carried out in conditions containing serum; in these experiments, phenol-red-free DMEM/F-12 with 10% FBS, exosome-depleted (Thermofisher Scientific), and 1% P/S was used instead. All incubations of cultured cells were carried out at 37 °C with 5% CO2.
4.3. C28/I2 Chondrocyte Stimulation
Chondrocytes were treated in serum-free chondrocyte media for 24 h at 37 °C with either IL-1β (30 ng/mL; Peprotech, Cheshire, UK), TGF-β (10 ng/mL; Peprotech, Cheshire, UK) or vehicle only.
4.4. Extracellular Vesicle Isolation and Staining
Cell culture supernatants used for extracellular vesicle isolation were centrifuged at 4400× g for 15 min to pellet and remove cells. The resulting supernatant underwent two rounds of centrifugation for 2.5 min at 13,000× g to pellet and remove cellular debris. Finally, EVs were pelleted at 20,000× g for 30 min and the supernatant discarded. The resultant EVs were resuspended in 0.22 μm double-filtered DPBS−/− (DF DPBS−/−) for staining. EVs were stained with either BODIPY-FL (1.67 µM; Invitrogen, Paisley, UK), CFSE (1.67 nM; Invitrogen, Paisley, UK) or BODIPY-Texas red (50 µM; Invitrogen, Paisley, UK) at 4 °C for 30 min. Following staining, EVs were washed in DF PBS−/− for 30 min at 20,000× g. Pelleted EVs were re-suspended in DF DPBS−/− and quantified as described below. All centrifugation steps were carried out at 4 °C.
For β1-integrin expression, EVs were incubated with 4 µg/mL mouse anti-human β1-integrin APC (Clone:TS2/16; eBioscience, Altricham, UK) or IgG1 isotype control (Clone: RMG1-1; Invitrogen, Paisley, UK) in conjunction with either CFSE or BODIPY-Texas Red at 4 °C for 30 min. EVs were then washed and resuspended as described above and analysed on the nano-flow cytometer (NanoFCM, Nottingham, UK). For experiments requiring the functional blocking of β1-integrin, 15 µg/mL of mouse monoclonal anti-human β1-integrin (Clone: P5D2; R&D Systems, Minneapolis, MN, USA) or 15 µg/mL of mouse IgG1 isotype control (Clone:11711; R&D Systems, Minneapolis, MN, USA) were used.
4.5. NanoFCM Quantification and Analysis
Prior to use, the NanoFCM was calibrated using dual-laser quality control beads (NanoFCM) to standardise laser settings between each use of the instrument. Quality control beads at a fixed nanoparticle concentration per ml were used to establish the nanoparticle concentration of a sample with unknown concentration. EV size was established based on a standard curve generated by running Silica Nanospheres Cocktail #1 (NanoFCM) at a range of known sizes, 65–155 nm. After laser, size and concentration standardisation, an aliquot of DF DPBS−/− lacking EVs was acquired as a blank to remove background nanoparticles from EV samples. Fluorescently labelled EVs were acquired on the nanoFCM with a sampling pressure of 1.0 kPa and events were recorded for a total of 1 min.
To ascertain a more robust evaluation of EV concentration, following acquisition, CFSE-stained samples were treated with 0.01% triton x-100 (Sigma-Aldrich) at room temperature for 20 min and run again on the nanoFCM. Data showing nanoparticle concentrations for EVs stained with CFSE were calculated by subtracting CFSE and triton EV concentrations from CFSE-only EV concentrations.
4.6. Transmission Electron Microscopy
Electron microscopy (EM) was performed at the Royal Brompton hospital on EV samples from chondrocytes either in monoculture or pellet cultures with or without triton treatment (as previously described). Briefly, EM 400 mesh copper grids were pre-coated with 1% formvar solution prepared in chloroform. The EV suspension was directly added onto the top side of EM grids and EVs were left to adhere for 5–10 min. EM grids were washed twice with filtered distilled water, fixed with 1% glutaraldehyde in PBS and finally stained in 2% uranyl acetate for 2 min. Excess stain was absorbed using filter paper and grids were left to dry in a closed container. A JEOL 1400+ TEM (Welwyn Garden City, UK) was used to collect a series of images from the EM grids at different magnifications, and 4 K × 4 K digital images at between 8000x and 20,000x were captured using AMT digital camera software (AMT 16X, Deben UK Ltd.; Bury St. Edmunds, UK).
4.7. Western Blotting
EVs were isolated from 3D cultures as described above. EVs and cells were lysed by adding 20 μL or 100 μL RIPA buffer (Thermofisher Scientific, Cambridge, UK) with 1% protease inhibitor (Thermofisher Scientific, Cambridge, UK) respectively. Total protein was quantified using a microBCA assay (Boster Bio, Pleasanton, USA) according to the manufacturer’s instructions. A total of 13 μg (EVs) or 30 μg (cells) of total protein was added to laemmeli buffer (Thermofisher Scientific, Cambridge, UK) with 1% v/v Dithiolthereitol (0.1 M DTT) and heated at 95 °C for 10 min. Samples were loaded onto a 10% polyacrylamide NuPAGE™ mini protein gel (Thermofisher Scientific) alongside the Spectra Multicolor Broad Range protein ladder to determine molecular weight (Thermofisher Scientific). Gel electrophoresis was carried out at 60 V for 20 min and then at 120 V for 60 min in 1x NuPAGE™ MOPS SDS Running Buffer (Thermofisher Scientific, Cambridge, UK). Gels were transferred onto an Immobilon®-E PVDF Membrane (Merck, Darmstadt, Germany) using a wet transfer technique at 90 V for 90 min in 1x NuPAGE™ Transfer Buffer (Thermofisher Scientific, Cambridge, UK).
The membrane was blocked in 5%
w/
v BSA PBS-T while shaking for 1 h at room temperature and then briefly washed with 0.1% BSA PBS-T. Primary antibodies (see
Table 1) were made in 1%
w/
v BSA PBS-T and membrane was incubated overnight on a shaker at 4 °C. Following incubation, the membrane was washed three times in PBS-T and appropriate secondary horseradish peroxidase (HRP)-conjugated antibody (see
Table 1) was added at room temperature for 1 h on a rocking shaker. The membrane was washed three times with 1%
w/
v milk in PBS-T for 10 min each, after which Pierce™ ECL Western Blotting Substrate (Thermofisher Scientific, Cambridge, UK) was added to develop the blot. Images were captured in a Gel Doc system (FluorChem E). After probing for calnexin, membranes were incubated in Restore™ Western Blot Stripping Buffer (Thermofisher Scientific, Cambridge, UK) for 15 min at room temperature on a rocking shaker and then washed 3 times in PBS-T for 10 min each. Following washing, the process of blocking, staining and developing the membrane was repeated for CD63 expression.
4.8. Extracellular Vesicle Uptake Assay
Unless otherwise specified, chondrocyte EV uptake assays were carried out as follows. C28/I2 chondrocytes were cultured in monolayers to 80% confluency in IBIDI µ-slide 8-well high chamber slides (Ibidi®, Gräfelfing, Germany). EVs labelled with BODIPY-Texas-red were added to the monolayers for four hours at a ratio of 6:1 EVs per chondrocyte, all incubations of cultured cells were carried out at 37 °C with 5% CO2 in the dark. Cells were washed after four hours with DF PBS and fixed with 4% PFA for 15 min. Fluoroshield™ with DAPI (Sigma-Aldrich, Gillingham, UK) was added to each condition prior to imaging via confocal microscopy on the Ziess LSM 800 (Ziess, Oberkochen, Germany). Uptake was quantified by mean grey value of BODIPY-Texas red per cell as an average of four fields of view per condition. Experiments requiring the functional blockade of β1-integrin were performed by treating EVs with anti-β1-integrin antibody and washing prior to incubation with chondrocyte monolayers. For experiments requiring cytoskeletal staining, following fixation with 4% PFA and permeabilization with 1% TritonX-100, cells either treated with BODIPY-TR EVs or not were incubated with FITC-conjugated Phalloidin (ThermoFisher Scientific, Cambridge, UK) as per manufacturers instructions. After the cells were washed, Fluoroshield™ with DAPI (Sigma-Aldrich, Gillingham, UK) was added and imaged as stated above.
4.9. mRNA Analysis
Chondrocyte RNA was isolated using the RNeasy mini kit (Qiagen, Manchester, UK) as per the manufacturer’s instructions. RNA yield was quantified on the Nanodrop ND-1000, and 1 ng of total RNA was used to generate cDNA using the RevertAID RT reverse transcription kit (ThermoFisher Scientific, Cambridge, UK) as per the manufacturer’s recommendations. For each PCR reaction, a total volume of 10 μL was used, consisting of 1 μL of cDNA, 5 μL of 2X Power SYBR Green Mastermix (Applied Biosystems, Inc., Norwalk, USA), 3 μL of dH
2O, and 1 μL of gene-specific primer. Primers were commercially available; the probes for specific mRNA targets can be found in
Table 2. Realtime PCR was carried out with the following amplification settings: 95 °C for 15 min; 40 cycles of 95 °C for 15 s, 60 °C for 1 min using the CFX connect real-time PCR system (Bio-Rad Laboratories Ltd., Watford, UK). Data are expressed as relative units calculated by 2
−Δ∆CT by normalization relative to 18 s and to fold change over untreated controls.
4.10. Alcian Blue Staining
3D-cultured chondrocytes were generated as described above, at the end of which 3D cultures were fixed in ice cold methanol (Sigma-Aldrich, Gillingham, UK) at −20 °C overnight. 3D cultures were then washed in warm PBS−/− and stained in Alcian blue 8GX solution (1% in 0.1 N hydrochloric acid; pH 1.0; Atom Scientific, Hyde, UK) overnight. Cultures were then rinsed in 0.1 N hydrochloric acid (Sigma-Aldrich, Gillingham, UK), an 8 M Guanidine–HCL solution (ThermoFisher Scientific, Cambridge, UK) was added and the samples were left on a mild shaker overnight. The optical density of the solution was measured at 630 nm on a microplate reader. DNA content was quantified by staining double-stranded DNA using Quant-it PicoGreen dye (ThermoFisher Scientific, Cambridge, UK), as directed by the manufacturers. Fluorescence was measured at an excitation of 480 nm on a NOVOstar microplate fluorometer (BMG Lab technologies, Aylesbury, UK). Alcian blue optical density was normalised to double-stranded DNA fluorescence and the values plotted as percentage ECM accumulation relative to control.
4.11. Statistical Analysis
All statistical analyses were conducted on GraphPad Prism 9. All statistical parameters and relevant statistical tests are described in figure legends. Data depict mean ± SEM, with p < 0.05 considered to be statistically significant. For all experiments, the value of n is represented by points within bars and is documented within the figure legend; this value represents the number of biological replicates.