N-(Benzothiazol-2-yl)-4-((5-chlorobenzoxazol-2-yl)amino)butanamide

Abstract

Benzazoles, such as benzoxazoles and benzothiazoles, are compounds with important biological and pharmacological activities and important intermediaries in synthesis. This report presents the synthesis of a butanamide derived from linking 5-chloro-2-aminobenzoxazole and 2-aminobenzothiazole via 4-chlorobutanoyl chloride. The corresponding compound N-(benzothiazol-2-yl)-4-((5-chlorobenzoxazol-2-yl)aminobutanamide was obtained at a 76% global yield using accessible starting materials and a methodology in two reaction steps. Furthermore, we conducted docking studies of this compound on 3-TOP protein to explore its potential as an antidiabetic agent.

1. Introduction

Benzazoles, including benzoxazoles and benzothiazoles, are aromatic compounds with good chemical stability [1]. These compounds consist of a benzene ring attached to either oxazole or thiazole. They are important raw materials because they are heterocycles with fascinating physicochemical properties [2]. In addition to their reactivity, several reports in the literature mentioned the varied pharmacological properties of these compounds, such as antidiabetic [3], anti-inflammatory [4], neuroprotective [5], and antibiotic [6,7].

Diabetes mellitus type II is a widespread disease that affects many people worldwide. One of the most common treatments for this disease is inhibiting the alpha-glucosidase enzyme, which metabolizes carbohydrates [8]. Acarbose is an example of a drug that works through this mechanism of action [9]. Therefore, we are interested in synthesizing compounds with antidiabetic activity, particularly of the alpha-glucosidase inhibitor type. Considering the antidiabetic properties of benzoxazole, we decided to synthesize a compound that contains both a benzoxazole unit and a benzothiazole unit in its structure.

2. Results

2.1. Synthesis

We were able to synthesize butanamide 5 using a simple and inexpensive two-step methodology. The first step involved an N-acylation reaction of 2-aminobenzothiazole 1 with 4-chlorobutanoyl chloride 2 in CH₂Cl₂ with NaHCO₃ as a base at room temperature for 8 h. The resultant 4-chlorobutanamide 3 was purified through crystallization from cold water and obtained as a white solid with a yield of 92% (Scheme 1) [10].

The ¹H spectrum of 4-cholorbutanamide 3 coincides with that reported for this spectrum, showing the characteristic signals for the H of the three CH₂, which appear at 2.05 ppm(t), 2.65 ppm(m), and 3.69 ppm (t). The amide’s NH signal appears at 12.45 ppm. On the other hand, in the ¹³C spectrum, the signal corresponding to the carbonyl group can be observed at 171.4 ppm (please refer to Figures S1 and S2 in the Supplementary Materials).

In the second step, the 4-chlorobutanamide 3 underwent a nucleophilic substitution reaction with 5-chloro-2-aminobenzoxazole 4 in CH₃CN, a non-protic polar solvent, with K₂CO₃ as the base at room temperature for 8 h. The resulting compound 5 was also purified via recrystallization from cold water and obtained as a yellow solid with a yield of 83%. See Scheme 1.

Compound 5 was successfully confirmed in the ¹H NMR spectrum. The spectrum shows observable signals from the aromatic ring of both 5-chlorobenzoxazole and benzothiazole from 6.96 to 7.98 ppm. Additionally, a wide signal that integrates for two hydrogens NH was observed at 7.60 ppm (please refer to Figure S3). The two-step synthesis resulted in an overall yield of 76% of N-(benzothiazol-2-yl)-2-((5-chlorobenzoxazol-2-yl)amino)butanamide 5 ppm (please refer to Figures S3–S9: ¹H RMN, ¹³C RMN, COSY, HSQC, HMBC, FAB-MS, and IR).

2.2. Molecular Docking Validation

We performed computational analyses via docking, confirming the hypothesis that this compound can act as an inhibitor of the alpha-glucosidase enzyme. In this sense, the active site of 3-TOP protein was validated with the redock co-crystallized native ligand acarbose. The protein 3-TOP is a human maltase-glucoamylase, and its function is to hydrolyze linear alpha-1,4-linked oligosaccharide substrates. Comparison of the poses obtained by the AutoDock Vina program against those of the crystallized protein yielded a root mean square deviation (RMSD) = 1.27 Å [11,12] (Figure 1).

2.3. Molecular Docking Studies

The AutoDock Vina open-source program was used to model the docking of butanamide 5 with the 3-TOP protein. The optimized structure of butanamide 5 is shown in Figure 2. The docking analysis revealed that butanamide 5 had high binding affinities with the 3-TOP protein, as evident from the docking score of −8.4 kcal/mol. According to the results, it is worth highlighting that the benzothiazole unit presents more interaction than the benzoxazole unit with some of the amino acids of the 3-TOP protein. It is relevant to note that benzothiazole presents a pi-alkyl interaction with proline 1159, both in the benzene ring and with the thiazole fragment, aside from the sulfur itself having a hydrogen bond interaction with Lysine 1460. Finally, amidic N also presents a hydrogen bond, where appropriate, with aspartate 1157. Additionally, the benzoxazole unit has a pi–pi interaction between the benzene ring and the tyrosine 1251 unit. However, neither the oxazole nor the oxygen atom presents any interaction. Chlorine has two pi–alkyl interactions, with tryptophan’s 1418 and 1523.

3. Discussion

This research involved a two-step synthesis process to obtain the desired product butanamide 5, with a 76% overall yield of the reaction. The synthesis was completed without complications, and no byproducts were observed using a simple reaction methodology. Furthermore, the two synthesized compounds were easily purified through a crystallization process using cold water.

In the computational studies, validation comparison of the poses obtained by the AutoDock Vina program against those of the crystallized protein indicates an appropriate optimization score. These values are small and support binding at the simulation site with the original orientation of the co-crystallized molecule. The interactions among butanamide 5 and specific amino acids of 3-TOP protein involve hydrogen bonds, pi–pi interactions, and pi–alkyl interactions. The docking analysis used showed that butanamide 5 exhibited docking poses with high binding affinities (in terms of affinity energy), and therefore, it might have antidiabetic activity.

4. Materials and Methods

4.1. General

All commercial reagents and solvents were used without any further purification. ¹H and ¹³C NMR spectra were recorded on a 600 MHz Varian AR spectrometer, with DMSO-d6 as solvent. Infrared spectra were obtained using a Thermo Scientific Nicolet (Waltham, MA, USA). Mass spectra were recorded on a GC-MS, Agilent Technologies (Santa Clara, CA, USA). The reactions were TLC monitored on silica gel 60 F254 (Merck, Darmstadt, Germany).

4.2. Synthesis of N-(Benzothiazol-2-yl)-4-chlorobutanamide (3)

NaHCO₃ (419 mg, 4.99 mmol) was added to a solution of 2-aminobenzothiazole 1 (500 mg, 3.33 mmol) in CH₂Cl₂ (10 mL). This mixture was stirred in a cold-water bath for 20 min. Then, 4-chlorobutanoyl chloride (448 µL, 4.00 mmol) was added dropwise. The reaction was stirred for 8 h at room temperature and monitored via TLC. After the reaction concluded, the resulting mixture was concentrated under reduced pressure. The obtained product was dissolved in cold water for 10 min. Finally, it was filtered and dried in a desiccator for 24 h. After purification, chlorobutanamide 3 (777 mg) was obtained as a white solid at a 92% yield [10].

¹H NMR (600 MHz, DMSO-d₆) δ ppm 2.05 (m, 2H-CH₂), 2.65 (t, J = 7.1 Hz, 2H-CH₂), 3.69 (t, J = 6.6 Hz, 2H-CH₂), 7.28 (t, J = 7.6 Hz, 1H-CH), 7.41 (t, J = 7.7 Hz, 1H-CH), 7.72 (d, J = 8.0 Hz, 1H-CH), 7.95 (d, J = 7.9 Hz, 1H-CH), 12.45 (s, 1H-NH). Figure S1.¹³C NMR (150 MHz, DMSO-d₆) δ ppm 27.3, 32.4, 44.8, 120.6, 121.7, 123.6, 126.1, 131.5, 148.6, 157.8, 171.4. Figure S2.

4.3. Synthesis of N-(Benzothiazol-2-yl)-4-((5-chlorobenzoxazol-2-yl)amino)butanamide (5)

K₂CO₃ (304.8 mg, 2.21 mmol) was added to a solution of N-(benzothiazol-2-yl)-4-chlorobutanoamide (279 mg, 1.10 mmol) in CH₃CN (5 mL), which was then stirred in a cold-water bath for 20 min. Next, a solution of 2-amino-5-chlorobenzoxazole (396 mg, 1.10 mmol) was added dropwise to the CH₃CN (5 mL). The reaction was TLC monitored. When the reaction ended, it was concentrated under reduced pressure. The compound obtained was dissolved in cold water for 10 min. Finally, it was filtered and dried in a desiccator for 24 h. After purification, butanamide 5 (352 mg) was obtained as a brown solid at an 83% yield.

¹H NMR (600 MHz, DMSO-d₆) δ ppm 2.17 (m, 2H-CH₂), 2.66 (t, J = 8.0 Hz, 2H-CH₂), 4.13 (t, J = 7.2 Hz, 2H-CH₂), 6.96 (dd, J = 2.2, 8.4 Hz, 1H-CH), 7.22 (d, J = 2.2 Hz, 1H-CH), 7.31 (m, 2H-CH), 7.43 (t, J = 7.6 Hz, 1H-CH), 7.60 (s, 2H-NH), 7.79 (d, J = 8.0 Hz, 1H-CH), 7.98 (d, J = 7.9 Hz, 1H-CH). Figure S3. ¹³C NMR (150 MHz, DMSO-d₆) δ ppm 18.0, 31.9, 48.5, 109.9, 115.3, 119.9, 121.3, 122.3, 124.2, 126.6, 128.1, 132.1, 145.7, 147.2, 148.8, 157.1, 164.3, 175.2. Figure S4. The COSY, HSQC, and HMBC spectrums are shown in Figures S5–S7, respectively. Fragment Molecular Formula: C₁₁H₁₅N₃OS₂⁺ 237 m/z. Fragment Molecular Formula: C₁₁H₁₅N₃OS₂⁺ 219 m/z. Figure S8. IR: 751.9, 1455.5, 1695.1 cm⁻¹_. Figure S9. Melting point 159–162 °C.

4.4. Validation of the Active Site

The active site of the 3-TOP was validated using acarbose as a native ligand. Autodock Vina generated an RMSD value of 1.27 Å. The validation was carried out with 1000 modes and an exhaustiveness of 1000, selecting the lowest energy value. Visualization and overlay of the co-crystalized ligand and the validation ligand were performed using symbol 2.5.

4.5. Molecular Docking

The docking of 3-TOP protein with butanamide 5 was simulated using AutoDock Vina, which has been used to estimate the conformation of protein–ligand complexes [13] and significantly improves the average accuracy of the binding mode predictions. The ligand and protein were prepared and saved in PDBQT format to carry out molecular docking. The x,y,z box size was set to 20 Å with grid spacing of 1.00 Å and centered at x = −51.08, y = 8.075, and z = −62.481. Autodock Vina was configured for 1000 modes and an exhaustiveness of 1000. The lowest energy mode was aligned to the receiver structure for analysis. Both pymol 2.5 (https://pymol.org, accessed on 30 March 2024) and Discovery Studio 2021 (https://discover.3ds.com/discovery-studio-visualizer-download, accessed on 30 March 2024) were used to visualize the protein–ligand interaction.

5. Conclusions

With a straightforward methodology, this two-step synthesis allowed us to obtain the compound of interest at an overall yield of 70%. Based on the results of the docking studies carried out, this compound has the potential to be an inhibitor of the alpha-glucosidase enzyme and, thus, an antidiabetic drug.