Protein-Gene Orthology in Baculoviridae: An Exhaustive Analysis to Redefine the Ancestrally Common Coding Sequences
Abstract
:1. Introduction
2. Materials and Methods
2.1. Baculovirus Genome Data Set
2.2. Ortholog Bioinformatic Pipeline for Baculovirus Genes
2.3. Orthologs Shared with Other Insect Viruses
2.4. Baculoviral Phylogeny Inference
2.5. Protein Bioinformatic Studies
3. Results
3.1. Baculovirus Genomes
3.2. Baculovirus Shared and Unique Protein Genes
3.3. Baculovirus Phylogeny
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Cerrudo, C.S.; Motta, L.F.; Cuccovia Warlet, F.U.; Lassalle, F.M.; Simonin, J.A.; Belaich, M.N. Protein-Gene Orthology in Baculoviridae: An Exhaustive Analysis to Redefine the Ancestrally Common Coding Sequences. Viruses 2023, 15, 1091. https://doi.org/10.3390/v15051091
Cerrudo CS, Motta LF, Cuccovia Warlet FU, Lassalle FM, Simonin JA, Belaich MN. Protein-Gene Orthology in Baculoviridae: An Exhaustive Analysis to Redefine the Ancestrally Common Coding Sequences. Viruses. 2023; 15(5):1091. https://doi.org/10.3390/v15051091
Chicago/Turabian StyleCerrudo, Carolina Susana, Lucas Federico Motta, Franco Uriel Cuccovia Warlet, Fernando Maku Lassalle, Jorge Alejandro Simonin, and Mariano Nicolás Belaich. 2023. "Protein-Gene Orthology in Baculoviridae: An Exhaustive Analysis to Redefine the Ancestrally Common Coding Sequences" Viruses 15, no. 5: 1091. https://doi.org/10.3390/v15051091