Deciphering Nicotine-Driven Oncogenesis in Head and Neck Cancer: Integrative Transcriptomics and Drug Repurposing Insights
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Cell Culture and Maintained Nicotine-Treated Sublines
2.2. Nicotine Tolerance
2.3. Colony Formation Assay
2.4. Matrigel Invasion Assay
2.5. Transcriptomic and Pathway Enrichment Analysis
2.6. Drug Repurposing by In Silico Bioinformatic Analysis
3. Results
3.1. Establishment of Chronic Nicotine-Exposed Head and Neck Cancer Cell Sublines
3.2. Global Transcriptomic Alterations Induced by Chronic Nicotine Exposure in HNC Cells
3.3. Dysregulated Molecular Pathways in Nicotine-Exposed HNC Cells
3.4. Nicotine-Driven Gene Signatures Associated with HNC Progression
3.5. Drug Repurposing for Targeting Nicotine-Driven HNC: Identification of Potential Therapeutics
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
HNC | Head and neck cancer |
DEGs | Differentially expressed genes |
TCGA-HNSC | The Cancer Genome Atlas Head–Neck Squamous Cell Carcinoma |
GDSC | Genomics of Drug Sensitivity in Cancer |
CTRP | Cancer Therapeutics Response Portal |
PRISM | Profiling Relative Inhibition Simultaneously in Mixtures |
HPV | Human papillomavirus |
nAChRs | Nicotinic acetylcholine receptors |
RMA | Robust multiarray averaging |
DAVID | Database for Annotation, Visualization, and Integrated Discovery |
KEGG | Kyoto Encyclopedia of Genes and Genomes |
GEOMEAN | Geometric mean |
MMP | Matrix metalloproteinase |
CCLE | Cancer Cell Line Encyclopedia |
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Gene Symbol | Non-Smoker Average (TPM) | Heavy Smoker Average (TPM) | Heavy/Non-Smoker (Ratio) | Wilcoxon Test (p) |
---|---|---|---|---|
ACVR1 | 19.8436 | 24.6753 | 1.2435 | 0.0042 |
ANO1 | 76.7027 | 144.7553 | 1.8872 | 0.0107 |
ATP2C1 | 66.6058 | 77.0756 | 1.1572 | 0.0237 |
BAG2 | 2.0117 | 3.1045 | 1.5432 | 0.0003 |
CASK | 20.5336 | 28.0910 | 1.3681 | 0.0067 |
CHST7 | 3.2940 | 6.0847 | 1.8472 | 0.0001 |
CNTN1 | 7.9286 | 13.5521 | 1.7093 | 0.0008 |
DHCR7 | 45.8835 | 90.5598 | 1.9737 | <0.0001 |
DSG2 | 35.3876 | 49.0542 | 1.3862 | 0.0247 |
EPB41L4B | 6.8675 | 7.7425 | 1.1274 | 0.0474 |
F2R | 16.2279 | 19.5841 | 1.2068 | 0.0138 |
FADS1 | 11.6135 | 16.6838 | 1.4366 | 0.0003 |
FKBP14 | 7.2604 | 8.5677 | 1.1801 | 0.0222 |
FOXF2 | 4.3628 | 5.5117 | 1.2633 | 0.0096 |
HLA-G | 2.4634 | 10.3195 | 4.1891 | 0.0035 |
HLTF | 11.4617 | 12.0126 | 1.0481 | 0.0039 |
HSPA13 | 8.3831 | 10.0846 | 1.2030 | 0.0091 |
LAPTM4B | 79.5637 | 106.3585 | 1.3368 | <0.0001 |
LARP6 | 11.9819 | 14.3860 | 1.2006 | 0.0276 |
LMAN2L | 13.0224 | 15.2664 | 1.1723 | 0.0011 |
LRP12 | 9.2280 | 14.1074 | 1.5288 | 0.0006 |
LRRC8D | 21.0277 | 26.0205 | 1.2374 | 0.0194 |
MLF1 | 20.5659 | 32.9833 | 1.6038 | <0.0001 |
MMP2 | 156.0294 | 214.7444 | 1.3763 | 0.0041 |
MYO10 | 23.2765 | 25.2124 | 1.0832 | 0.0480 |
PLPP2 | 59.7515 | 77.8394 | 1.3027 | 0.0003 |
PPT1 | 63.3588 | 87.7912 | 1.3856 | 0.0164 |
RPN1 | 202.3942 | 226.2346 | 1.1178 | 0.0052 |
SEL1L3 | 20.1116 | 23.9188 | 1.1893 | 0.0196 |
SLC39A14 | 22.6472 | 27.4927 | 1.2140 | 0.0210 |
SPARC | 1358.7691 | 1798.5699 | 1.3237 | 0.0111 |
SQLE | 68.2900 | 76.8158 | 1.1248 | 0.0299 |
STEAP1 | 19.8731 | 22.1430 | 1.1142 | 0.0003 |
TRAM2 | 9.3543 | 12.5970 | 1.3466 | 0.0002 |
TUSC3 | 32.7518 | 41.8073 | 1.2765 | 0.0089 |
UBXN7 | 8.9994 | 11.0759 | 1.2307 | 0.0092 |
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You, G.-R.; Chang, D.Y.; Huang, H.-H.; Chen, Y.-J.; Chang, J.T.; Cheng, A.-J. Deciphering Nicotine-Driven Oncogenesis in Head and Neck Cancer: Integrative Transcriptomics and Drug Repurposing Insights. Cancers 2025, 17, 1430. https://doi.org/10.3390/cancers17091430
You G-R, Chang DY, Huang H-H, Chen Y-J, Chang JT, Cheng A-J. Deciphering Nicotine-Driven Oncogenesis in Head and Neck Cancer: Integrative Transcriptomics and Drug Repurposing Insights. Cancers. 2025; 17(9):1430. https://doi.org/10.3390/cancers17091430
Chicago/Turabian StyleYou, Guo-Rung, Daniel Yu Chang, Hung-Han Huang, Yin-Ju Chen, Joseph T. Chang, and Ann-Joy Cheng. 2025. "Deciphering Nicotine-Driven Oncogenesis in Head and Neck Cancer: Integrative Transcriptomics and Drug Repurposing Insights" Cancers 17, no. 9: 1430. https://doi.org/10.3390/cancers17091430
APA StyleYou, G.-R., Chang, D. Y., Huang, H.-H., Chen, Y.-J., Chang, J. T., & Cheng, A.-J. (2025). Deciphering Nicotine-Driven Oncogenesis in Head and Neck Cancer: Integrative Transcriptomics and Drug Repurposing Insights. Cancers, 17(9), 1430. https://doi.org/10.3390/cancers17091430