Transcriptome-Based Weighted Correlation Network Analysis of Maize Leaf Angle Regulation by Exogenous Brassinosteroid
Abstract
:1. Introduction
2. Materials and Methods
2.1. Plant Materials and Material BR Treatment
2.2. Ligular Region Longitudinal Structure Analysis
2.3. Total RNA Extractions, cDNA Library Construction, and Sequencing
2.4. Transcriptome Analysis
2.5. Weighted Gene Co-Expression Network Analysis
2.6. qRT-PCR of DEGs
2.7. Statistical Analysis of the Leaf Angle and the Cell Length
3. Results
3.1. Screening of the Optimal Concentration of Exogenous BR
3.2. Cytological Observations of Ligular Region
3.3. Analysis of DEGs in B73 under Different Concentrations of BR
3.4. Gene Ontology Classification Analyses of B73 DEGs under Different BR Concentrations
3.5. Pathway Enrichment Analysis of B73 DEGs under Different BR Concentrations
3.6. Gene Co-Expression Network Analysis
3.7. Functional Analysis of Genes in Correlated Modules
3.8. Analysis of Hub Genes Interaction Network in the Module
3.9. Validation of DEGs by qRT-PCR Analysis
4. Discussion
4.1. Exogenous BR Promotes the Increase of Maize Leaf Angle
4.2. Analysis of DEGs Regulation by Exogenous BR
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Ji, X.; Gao, Q.; Zhuang, Z.; Wang, Y.; Zhang, Y.; Peng, Y. Transcriptome-Based Weighted Correlation Network Analysis of Maize Leaf Angle Regulation by Exogenous Brassinosteroid. Agronomy 2022, 12, 1895. https://doi.org/10.3390/agronomy12081895
Ji X, Gao Q, Zhuang Z, Wang Y, Zhang Y, Peng Y. Transcriptome-Based Weighted Correlation Network Analysis of Maize Leaf Angle Regulation by Exogenous Brassinosteroid. Agronomy. 2022; 12(8):1895. https://doi.org/10.3390/agronomy12081895
Chicago/Turabian StyleJi, Xiangzhuo, Qiaohong Gao, Zelong Zhuang, Yinxia Wang, Yunfang Zhang, and Yunling Peng. 2022. "Transcriptome-Based Weighted Correlation Network Analysis of Maize Leaf Angle Regulation by Exogenous Brassinosteroid" Agronomy 12, no. 8: 1895. https://doi.org/10.3390/agronomy12081895
APA StyleJi, X., Gao, Q., Zhuang, Z., Wang, Y., Zhang, Y., & Peng, Y. (2022). Transcriptome-Based Weighted Correlation Network Analysis of Maize Leaf Angle Regulation by Exogenous Brassinosteroid. Agronomy, 12(8), 1895. https://doi.org/10.3390/agronomy12081895