1. Introduction
Glaucoma is a heterogeneous group of eye diseases that affect more than 60 million individuals globally and is the second most common cause of irreversible blindness, including in the Saudi population [
1]. Primary open-angle glaucoma (POAG) is the most common form of glaucoma with clinical features such as progressive death of retinal ganglion cells (RGC), damage to the optic nerve, and loss of vision [
2]. Risk factors for POAG include aging, gender, increased intraocular pressure (IOP), family history, and African ancestry [
3]. POAG is inherited as a complex trait; familial studies and genome-wide genetic association studies (GWAS) have led to strong evidence for the important contribution of genetic influence in the pathogenesis of POAG [
4]. Several GWAS have identified significant genetic association in multiple genes and loci but with a varying effect on POAG outcomes [
5], including the rs2472493 (chromosome 9, Position 106735669) located upstream of the ATP-binding cassette subfamily A (ABC1) member 1 (
ABCA1); rs7636836 (chromosome 3, Position 173247819) in fibronectin type III domain containing 3B (
FNDC3B); and rs61275591 (chromosome 5, Position 55811313) flanking the
ANKRD55–
MAP3K1 intergenic loci [
6,
7].
ABCA1 and polymorphisms in this gene are recognized for their role in lipid metabolism [
8,
9]. Studies also support their contribution in neuroinflammatory and neurodegenerative conditions, RGC apoptosis, and plausibly a regulatory role in eye development [
10,
11,
12]. Polymorphism rs2472493 is located in the 5′ upstream region near the
ABCA1 gene and has shown a significant association with POAG and IOP in the European and Asian populations [
6]. Similar associations were reported in an Australian cohort [
10] and POAG patients from southern China [
13], supporting a crucial role of
ABCA1 genetic polymorphism in POAG pathogenesis. Similarly, another genome-wide study reported two novel polymorphisms, rs7636836 and rs61275591, to be associated with the Japanese POAG cases [
7]. Rs7636836 in
FNDC3B encoding an extracellular matrix protein may contribute to the regulation of the TGFβ pathway which is strongly implicated in glaucoma pathogenesis [
14,
15]. The presence of a genetic variant could potentially disrupt these signaling pathways and contribute to the development of glaucoma. Meanwhile, rs61275591 is flanked in between two genes,
ANKRD55 and
MAP3K1, of unknown significance.
ABCA1,
FNDC3B, and
ANKRD55–
MAP3K1 are all highly expressed in the tissues relevant to glaucoma, supporting their plausible role in ocular development and glaucoma-related phenotypes [
7,
10]. Moreover, these polymorphisms might alter certain regulatory motifs and histones, and have been associated with cis-expression quantitative trait loci (eQTLs) as predicted using the NIH SNP function prediction (
https://snpinfo.niehs.nih.gov/snpinfo/snpfunc.html, accessed on 11 December 2022) and HaploReg v4.1 web tools highlighting their plausible regulatory function (
Supplementary Table S1).
Glaucoma is a prevalent disease in the Arab population, with some studies reporting a higher prevalence rate compared to other populations [
1]. The Middle East is also known for its high rate of consanguinity, which suggests that genetics might play a role in certain subsets of this population. This makes it crucial to investigate the genetic basis of glaucoma in Arab populations, as genetic factors may be contributing to the high prevalence of the disease. However, despite the need for research, there is currently a lack of consistent data on the possible causative genes or variants involved in glaucoma in this population [
16,
17,
18,
19]. Therefore, genetic association studies are needed to provide a better understanding of the genetic factors underlying glaucoma in the Arab population. Moreover, genome-wide studies identifying genetic polymorphism(s) or loci to be associated with POAG have been mostly performed in Caucasians, Europeans, or Asians and need replication in other ethnicities. Using a case-control candidate gene approach we investigated the association of polymorphisms rs2472493 upstream of
ABCA1, rs7636836 in
FNDC3B, and rs61275591 near
ANKRD55–
MAP3K1 genes with POAG and its related phenotypes in a Saudi cohort.
4. Discussion
The polygenic nature, high probability of inheritance, and race-specific prevalence to POAG suggests a risk of genetic predisposition to the disease [
5,
16,
22]. Although polymorphisms in a number of genes or loci have linked with POAG, the exact molecular contribution of these genes toward POAG development and/or progression is still unclear [
5,
16]. Likewise, the genetic basis of POAG in the middle-eastern Arab population is not clear and remains to be identified [
19]. Thus, we investigated three previously reported polymorphisms that had been associated with POAG and/or increased IOP [
6,
7]. However, we observed no association of these polymorphisms with POAG and other related clinical markers.
Rs2472493[G] near
ABCA1 had a MAF of 0.38 in our POAG cases and was not significantly different compared to controls (0.39). As compared to other ethnicities, the MAFs were found to be similar to the POAG population of Hispanics (0.37), and African American (0.35) [
23], but lower than the POAG population of non-Hispanics (0.42), East Asians (0.56) [
23], and Europeans (0.51) [
10], exhibiting ethnic variations.
Hysi et al., using a genome-wide meta-analysis study, first reported an association of polymorphism rs2472493 near
ABCA1 with POAG in a multi-ethnic population of European and Asian ancestry [
6]. The association was successfully replicated in POAG patients in Australia [
10] and southern China [
13]. However, our study failed to replicate these findings in POAG patients of Saudi origin. Similarly, no associations of
ABCA1 gene polymorphism(s) have been reported among a PACG population of Han Chinese [
24], in a Brazilian POAG cohort [
25], and in Arab POAG and congenital glaucoma patients from Jordan [
17]. This supports our finding that polymorphism rs2472493 in
ABCA1 may not have a major role in the POAG pathogenesis of Saudi Arab ethnicity.
There are enough data to implicate the role of ABCA1 in eye diseases, including glaucoma. Expression of ABCA1 has been confirmed in several ocular tissues relevant to glaucoma [
13]. An in vivo study has demonstrated the role of ABCA1 in the inhibition of ocular inflammation by activating liver X-receptor in autoimmune uveitis [
26]. In another glaucoma model, ABCA1 was related to RGC apoptosis [
27]. Likewise, a strong linkage has been reported between rs2472493 and rs2472494 near
ABCA1 that may modify the regulatory binding motif sequence of PAX6, suggesting a plausible regulatory role in ocular development [
10]. However, the exact molecular mechanism(s) are still unknown. This is in contrast to our negative findings which indicate that polymorphism rs2472493 located near
ABCA1 might not be a major player in POAG pathogenesis in Middle Eastern Saudi Arab patients. There could be several possible reasons for the noted absence of this association in the Saudi cohort. The absence of an association between the rs2472493 polymorphism in
ABCA1 and POAG in Saudi Arabs could be due to several factors. Genetic differences may affect the expression of certain genes and their association with diseases, and this could be a possible reason for the lack of association in Saudi Arabs. In addition, a relatively small number of samples investigated in this study may not have enough statistical power to detect a significant association. Environmental factors, such as diet or lifestyle, may also play a role in influencing the outcome. Moreover, clinical differences or variations in POAG patients could also be a factor that could contribute to the lack of association in Saudi Arab populations. However, the association of other polymorphisms in this gene with POAG cannot be completely ruled out and requires further investigation.
The expression of
FNDC3B has been demonstrated in all the ocular tissues involved in glaucoma [
7,
28].
FNDC3B plays a regulatory role in the adipocyte formation [
29] and encodes proteins involved in cell adhesion, and TGFβ and Wnt/β-catenin signaling pathways [
30,
31,
32]. These processes and pathways play a critical role in glaucoma pathophysiology and could be the plausible mechanism(s) by which rs7636836 in
FNDC3B might influence the risk of POAG [
14,
33,
34,
35]. In a large population-based study of POAG patients in Japan, Shiga et al. reported the genome-wide association of polymorphism rs7636836 in the
FNDC3B gene [
7]. However, these findings were not replicated in Singapore Chinese, European, and African populations [
7]. The observed MAFs of rs7636836[T] in
FNDC3B in our POAG patients and controls were 0.05 and 0.07, respectively. The MAF was comparable to the European POAG population (0.06) but lower than those observed in POAG patients from Japan (0.40) and Chinese patients in Singapore (0.21) [
7]. No significant allelic and genotype association was seen between rs7636836 in
FNDC3B and our POAG cohort.
In addition to rs7636836, the rs61275591 locus was also one of the novel loci associated with POAG in the Japanese population in the same study by Shiga et al. [
7]. The MAFs reported were 0.27 in the Japanese, 0.31 in the Singaporean Chinese, 0.08 in the European, 0.07 in the African American, and 0.06 in the African population as compared to 0.17 observed in our Saudi cohort, which is lower than the East Asians but higher than the Africans. Rs61275591 was not associated with POAG in our cohort as was reported in the Singaporean Chinese, European, and African populations [
7]. The rs61275591 locus is mapped between
ANKRD55 and
MAP3K1 genes.
ANKRD55 encodes ankyrin repeat domain-containing protein 55, which mediates protein–protein interactions and may have a role in autoimmune diseases [
36], whereas MAP3K1, which is also known as MEK kinase 1, is a serine/threonine kinase that belongs to the mitogen-activated protein kinases (MAP3K) family. MAP3K1 helps regulate signaling pathways that control various processes in the body, including sex determination, cell development, differentiation, migration, survival, and apoptosis. Genomic alterations in MAP3K1 have been reported in diverse cancer types and the Swyer syndrome [
37,
38]. However, the possible relevance of
ANKRD55 and
MAP3K1 in glaucoma is unknown.
Epistatic interactions are known to play a critical role in the pathogenesis of polygenic multifactorial diseases highlighting the plausible role of genetic background and interplay in disease outcome and progression [
39,
40,
41]. Since glaucoma is also polygenic in nature with no clear pattern of inheritance, there may exist similar mechanism(s) that might modulate the disease processes [
42]. Thus, to examine any synergistic effect, we conducted a combined allelic and genotype analysis of rs2472493, rs7636836, and rs61275591 in POAG. However, none of the genotype and allelic (haplotype) combinations showed any significant association with POAG. Nonetheless, the possible effect(s) of other polymorphism(s) in LD or other epistatic interactions cannot be ruled out.
The genetic variants of
ABCA1 and
FNDC3B have also been linked with increased IOP [
6]. ABCA1 was demonstrated to regulate IOP via the CAV-1/NO/eNOS pathways [
43]. However, all three polymorphisms investigated in this study showed no genotype effect on the clinical markers of disease severity in our cohort. Similarly, rs2472494 (in strong LD with rs2472493), rs7636836, and rs61275591 in a few of the glaucoma loci investigated by Chai et al. were recently reported to show no association with optic disc parameters [
44].
Therefore, our findings suggest that rs2472493 upstream of ABCA1, rs7636836 in FNDC3B, and rs61275591 near ANKRD55–MAP3K1 may not play a significant role in POAG in Arabs of Saudi origin. However, to rule out the role of other polymorphisms in these genes, the epistatic, and gene-environment interaction need further investigation. Moreover, the relatively small sample size used in this study further warrants the need for replication in a well-designed, multicenter, population-based study to validate these results. The calculated power of our study was >0.9 per allele for the rs2472493 (ABCA1) and rs61275591 (ANKRD55–MAP3K1) polymorphisms but was underpowered (0.68 per allele) for the rs7636836 (FNDC3B) polymorphism to detect an odds of 2.0 and α = 0.05 but the sample size needs to be much larger to detect an effect size of 1.5 or less, as is commonly reported in polygenic case-control studies.
We conclude that the polymorphisms rs2472493 upstream of ABCA1, rs7636836 in FNDC3B, and rs61275591 near the ANKRD55 and MAP3K1 genes are not associated with POAG in Middle Eastern Arabs of Saudi origin. However, the results require further confirmation in different regions and in much larger samples.