Phosphorus-Use-Efficiency Gene Identification in Fabaceae and RSL2 Expansion in Lupinus albus Is Associated with Low-Phosphorus Adaptation
Abstract
:1. Introduction
2. Materials and Methods
2.1. Downloading the Published Genomes of Fabaceae Crops
2.2. Analysis of Evolutionary Relationships of Fabaceae Crops
2.3. Identification of Phosphorus-Utilization Genes in Fabaceae Crops
2.4. Definition of the Amplification Modes of Homologous Genes
2.5. The Structure and Motif Prediction of Homologous Genes
2.6. Analysis of Cis-Acting Element of RSL2 Genes
2.7. Response of White Lupin to P Deficiency
3. Results
3.1. Identification of Phosphorus-Use-Efficiency Gene Families in 35 Fabaceae Genomes
3.2. Over-Retention of RSL2 Genes in L. albus
3.3. RSL2 Genes Expanded through WGT in L. albus
3.4. LalRSL2s Exhibit a Diverse Gene Structure and Motif Composition
3.5. LalRSL2s Contain Various Cis-Acting Elements in Promoter Regions
3.6. LalRSL2s Exhibit Tissue-Specific Expression under Low-Phosphorus Stresses
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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PUE Pathways | Arabidopsis | Lupinus | Pisum | Trifolium | Medicago | Glycine | Phaseolus | Vigna | Fabaceae |
---|---|---|---|---|---|---|---|---|---|
Glycolysis | 82 | 145 | 102 | 91 | 97 | 194 | 97 | 96 | 109 |
Calvin cycle | 16 | 33 | 33 | 19 | 28 | 45 | 23 | 21 | 25 |
TCA cycle for organic acid | 34 | 45 | 23 | 30 | 27 | 44 | 29 | 26 | 30 |
CO2 fixation in non-photosynthetic | 20 | 50 | 42 | 31 | 42 | 64 | 36 | 39 | 40 |
Lipid remodeling | 73 | 112 | 75 | 63 | 70 | 134 | 75 | 71 | 81 |
Primary root development | 16 | 46 | 22 | 26 | 30 | 50 | 25 | 26 | 29 |
Lateral root development | 21 | 83 | 65 | 65 | 65 | 139 | 66 | 71 | 73 |
Root hair development | 50 | 264 | 188 | 182 | 211 | 371 | 218 | 212 | 226 |
Acid phosphatase | 26 | 29 | 23 | 22 | 25 | 35 | 21 | 19 | 23 |
Secreted Acid phosphatase | 2 | 8 | 3 | 4 | 3 | 5 | 3 | 3 | 4 |
Secreted ribonuclease | 5 | 7 | 5 | 5 | 9 | 7 | 4 | 4 | 5 |
Phosphate uptake | 9 | 12 | 10 | 7 | 11 | 14 | 9 | 8 | 10 |
Phosphate transport | 25 | 35 | 30 | 23 | 25 | 48 | 24 | 25 | 28 |
Mitochondrion electron transport | 10 | 23 | 19 | 16 | 19 | 31 | 19 | 18 | 19 |
Proton transport | 24 | 115 | 78 | 103 | 120 | 111 | 94 | 89 | 90 |
Sugar transport | 38 | 99 | 68 | 64 | 71 | 142 | 79 | 77 | 80 |
Organic acid transporter | 70 | 73 | 78 | 59 | 75 | 129 | 69 | 70 | 76 |
Other PUE genes | 164 | 1041 | 927 | 841 | 985 | 1453 | 902 | 853 | 940 |
Total number | 685 | 2220 | 1791 | 1651 | 1913 | 3016 | 1793 | 1728 | 1888 |
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Li, X.; Yang, J.; Zhang, Q.; Zhang, L.; Cheng, F.; Xu, W. Phosphorus-Use-Efficiency Gene Identification in Fabaceae and RSL2 Expansion in Lupinus albus Is Associated with Low-Phosphorus Adaptation. Genes 2024, 15, 1049. https://doi.org/10.3390/genes15081049
Li X, Yang J, Zhang Q, Zhang L, Cheng F, Xu W. Phosphorus-Use-Efficiency Gene Identification in Fabaceae and RSL2 Expansion in Lupinus albus Is Associated with Low-Phosphorus Adaptation. Genes. 2024; 15(8):1049. https://doi.org/10.3390/genes15081049
Chicago/Turabian StyleLi, Xing, Jinyong Yang, Qian Zhang, Lingkui Zhang, Feng Cheng, and Weifeng Xu. 2024. "Phosphorus-Use-Efficiency Gene Identification in Fabaceae and RSL2 Expansion in Lupinus albus Is Associated with Low-Phosphorus Adaptation" Genes 15, no. 8: 1049. https://doi.org/10.3390/genes15081049