Novel Circoviruses from Birds Share Common Evolutionary Roots with Fish Origin Circoviruses
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Preparation
2.2. Circovirus Specific PCR and Complete Genome Amplification
2.3. Next-Generation Sequencing
2.4. Software
3. Results and Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Ethics approval
References
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Bird Species | Sample | Data about the Rescued Bird |
---|---|---|
Common blackbird, Turdus merula | B,K,L,T | Leg injury |
K,L | Traumatic injuries, internal bleeding | |
K,L,S | Hemorrhagic fluid in the thoracoabdominal cavity | |
Common buzzard, Buteo buteo | K,L,S | Caseonecrotic granulomas in lung, liver, and gizzard; mycobacteriosis |
K,L | Electric shock, necrotizing leg | |
Common crane, Grus grus | Lesion | Signs of pox virus infection |
Common house martin, Delichon urbicum | K,L | NA |
L | Eye lesions, small, pale kidneys | |
Common kestrel, Falco tinnunculus | K,L | Traumatic injuries |
K,L | Wing injury | |
B,K,L | NA | |
K,L | Electric shock | |
K,L | Electric shock | |
Common kingfisher, Alcedo atthis | K,L | NA |
Common pheasant, Phasianus colchicus | K,L,S | NA |
Eurasian woodcock, Scolopax rusticola | K,L | Shot injury of the breast |
European bee-eater, Merops apiaster | K,L | Wing injury, weight loss, degenerated kidneys |
European Green Woodpecker, Picus viridis | B,K,L,S | Head injury |
European honey buzzard, Pernis apivorus | K,L | Traumatic injuries |
Eurasian sparrowhawk, Accipiter nisus | B,K,L | Wing injury |
K,L | Weight loss, bleeding in the stomach | |
Great cormorant, Phalacrocorax carbo | K,L | Traumatic injuries, tested positive for polyomavirus |
Great spotted woodpecker, Dendrocopos major | K,L | Traumatic injuries |
Grey heron, Ardea cinerea | K,L | Necrotizing wing, visceral gout |
Little bittern, Ixobrychus minutus | B,K,L | Wing injury, poor body condition, weight loss, enlarged liver with lesions |
B,K,L | Traumatic injuries of the left body site, kidney injury | |
B,K,L | Poor body condition, broken lower mandible, visceral gout | |
Little owl, Athene noctua | K,L | Poor body condition and weight loss |
Mute swan, Cygnus olor | K,L | Weight loss, diarrhea |
Tawny owl, Strix aluco | K | NA |
K,L | Enlarged liver, liver failure, pale kidneys | |
Water rail, Rallus aquaticus | K,L | Pale kidneys |
Little Bittern Circovirus | European Bee-Eater Circovirus | |
---|---|---|
Genome | 1935 nt | 1960 nt |
5′ intergenic region | nt 1859–51 | nt 1894–33 |
Nonanucleotide | TAGTATTAC | TAGTATTAC |
Stem-loop inverted repeat | CACAGGCGCCGG | GCCGAGGTGGCCG |
rep | nt 52–999 (315 aa) | nt 34–945 (303 aa) |
RCR motif I | MTLNN | FTLNN |
RCR motif II | PHLQG | PHLQG |
RCR motif III | YCSK | YCSK |
Walker-A motif | GPPGCGKT | GPPGCGKS |
Walker-B motif | VIDDF | IVDDF |
Motif C | ITSN | ITSN |
cp | nt 1858–1229 (209 aa) | nt 1893–1171 (240 aa) |
3′ intergenic region | nt 1000–1228 | nt 946–1170 |
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Fehér, E.; Kaszab, E.; Bali, K.; Hoitsy, M.; Sós, E.; Bányai, K. Novel Circoviruses from Birds Share Common Evolutionary Roots with Fish Origin Circoviruses. Life 2022, 12, 368. https://doi.org/10.3390/life12030368
Fehér E, Kaszab E, Bali K, Hoitsy M, Sós E, Bányai K. Novel Circoviruses from Birds Share Common Evolutionary Roots with Fish Origin Circoviruses. Life. 2022; 12(3):368. https://doi.org/10.3390/life12030368
Chicago/Turabian StyleFehér, Enikő, Eszter Kaszab, Krisztina Bali, Márton Hoitsy, Endre Sós, and Krisztián Bányai. 2022. "Novel Circoviruses from Birds Share Common Evolutionary Roots with Fish Origin Circoviruses" Life 12, no. 3: 368. https://doi.org/10.3390/life12030368