Imperative Role of Machine Learning Algorithm for Detection of Parkinson’s Disease: Review, Challenges and Recommendations
Abstract
:1. Introduction
- We introduce the background knowledge of Parkinson disease with main characteristics and major motor and non-motor symptoms.
- We classified ML models and also analyzed the accuracy of ML models for the diagnosis of Parkinson disease on the basis of speech, handwriting, and gait parameters.
- In this paper, a different ML-based framework for the diagnosis of Parkinson disease is also discussed, with the objective of enhancing Parkinson disease data.
- Finally, the article highlights the challenges and discusses the recommendations for the future work.
2. Methodology of the Study
2.1. Data Acquisition
2.2. Journals
3. Parkinson’s Disease: Background
Clinical Methods Used to Diagnose Parkinson’s Disease
- a.
- Medical Treatment
- b.
- COMT Inhibitors
- c.
- Anticholinergic medications
- d.
- Amantadine
4. Machine Learning Techniques Used to Diagnose Parkinson’s Disease
5. Adaptation of the ML Framework
5.1. Architecture Based on Acoustic Voice Dataset as Input
5.2. Architecture Based on Handwritten Patterns as Input
5.3. Architecture Based on Gait Dataset as Input
6. Discussion: Challenges and Recommendations
6.1. Challenges
- Manifold modeling
- Model Interpretation
6.2. Recommendations
- The adoption of real-time and customized based devices with an advanced computing unit is necessary to diagnosis Parkinson’s disease in real-time data through image and sensory data. It has already been proven that ML models have the capability to detect any anomalies of real-time data generated from the IoT-based devices. Edge computing can be integrated with customized devices to compute data at the edge network and provide the results at the same time.
- At present, the researchers have realized different ML models that diagnose Parkinson’s disease on the basis of individual symptoms. The researchers need to focus on developing an ML model that combinedly uses all the symptoms as input parameters for Parkinson’s disease. A light-weight portable device can be used to diagnose the various symptoms of PD by measuring several parameters such as accuracy, precision, sensitivity, recall, etc. This device should be easily wearable and washable, and it should be able to identify the different stages of the disease, along with analyze the changes due to medication treatment.
- Currently wearable sensors are limited to the diagnosis of Parkinson’s disease on the basis of gait parameters. There is a need for embedding the other modules in the wearable device that is capable of detecting Parkinson’s disease. Researchers need to focus on developing wearable sensor devices not only for one symptom but also for diagnosing the other symptoms as well. For instance, a wrist-worn device may be developed and it may be able to collect data continuously over a long period of time and identify different PD symptoms.
- Cloud- and ML-based frame works diagnose Parkinson’s disease by analyzing individual speech disorders, handwriting parameters, and many more symptoms of the subjective disease based on a cloud computing platform. Here, a patient’s file will be stored in the cloud database where patients can give their sample in the form of a voice recording based through a portable device as shown in Figure 7. The data will then be uploaded in the cloud platform for analysis and classification by using different ML classifier models. Once the patients’ data (based on various symptoms) are diagnosed by the ML classifiers in the cloud platform, the system will automatically generate a decision on whether the patient has symptoms related to PD or not. If the patient’s sample is positive based on PD symptoms, then the system will directly send information to the concerned physician. Once the physician checks all the reports, he will then upload his advice and recommendations to the cloud platform, and patients can easily receive them by their portable device.
- As future work, we intend to study the utilization of big data analytics tools along with AI approaches to diagnose more severe infections and control their spread in a timely manner.
7. Conclusions
Author Contributions
Funding
Conflicts of Interest
References
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Reference | Machine Learning Algorithms Used | Objective | Tools Used | Source of Data | No. of Subjects | Outcomes |
---|---|---|---|---|---|---|
Benba, A. et al., 2015 [40] | Linear kernel SVM | Classification of PD from HC | Not mentioned | Department of Neurology Cerrahpas‚ a Faculty of Medicine, Istanbul University | 34, 17 PD + 17 HC | Classification Accuracy = 91.17% |
Mathur, R. et al., 2019 [41] | ANN, KNN with K-fold cross validation; K = 10 | Classification of PD from HC | Weka | UCI machine learning repository | 195 instances, 24 attributes | Accuracy of: KNN with Adaboosta.M1—91.28% KNN with Bagging—90.76% KNN with MLP—91.28% |
Sakar et al., 2019 [44] | Naïve Bayes, Logistic regression, SVM (RBF and Linear), KNN, random Forest, MLP | Classification of PD from HC | JupyterLab with python programming language | Collected from participants | 252, 188 PD + 64 HC | Highest accuracy obtained from SVM (RBF)—86% |
Yasar, A. et al., 2019 [45] | Artificial Neural Network | Classification of PD from HC | MATLAB | Collected from participants | 80, 40 PD + 40 HC | Accuracy of ANN—94.93% |
Almeida, J.S. et al., 2019 [48] | KNN, MLP, Optimum Path Forest (OPF), SVM with RBF, Linear and Polynomial kernel | Classification of PD from HC | OpenCV-2.49 | UCI machine learning repository | 98, 63 PD + 35 HC | acoustic cardioid (AC) accuracy—94.55% |
Alqahtani, E.J. et al., 2018 [50] | NNge and ensemble algorithm, AdaBoostM1 with 10- fold cross validation | Classification of PD from HC | Weka | Collected from participants | 31, 23 PD + 8 HC | Accuracy—96.30% |
Avuçlu, E., Elen, A., 2020 [51] | KNN, random forest, naïve Bayes, SVM | Classification of PD from HC | JupyterLab with python programming language | UCI machine learning repository | 31, 23 PD + 8 HC | Highest accuracy achieved from SVM—88.72% and lowest accuracy from naïve Bayes—70.26% |
Zehra Karapinar, 2020 [52] | CART, ANN, SVM | Classification of PD from HC | Weka | Collected from participants | 31, 23 PD + 8 HC | Highest accuracy from SVM—93.84% |
Yaman, O. et al., 2019 [53] | SVM, KNN | Classification of PD from HC | MATLAB | Collected from participants | 31, 23 PD + 8 HC | Accuracy rate of SVM—91.25% and KNN—91.23% |
Aich, S. et al., 2019 [54] | Random forest, Bagging CART, SVM, Boosted C5.0 | Classification of PD from HC | Not mentioned | Collected from participants | 31, 23 PD + 8 HC | Highest accuracy obtained from SVM with RBF kernel—97.57% |
Haq, A.U. et al., 2019 [55] | L1-Norm SVM with K- fold cross validation; K = 10 | Classification of PD from HC | Python | University of Oxford (UO) | 31, 23 PD + 8 HC | Accuracy rate—99% |
Wu et al., 2017 [57] | Generalized Logistic Regression Analysis (GLRA), SVM, Bagging ensemble | Classification of PD from HC | Not mentioned | Collected from participants | 31, 23 PD + 8 Healthy control (HC) | Optimal result obtained from bagging ensemble; sensitivity—97.96%, specificity—68.75% |
Peker, 2016 [58] | SVM with RBF kernel | Classification of PD from HC | Weka | University of Oxford (UO) | 31, 23 PD + 8 HC | Accuracy—98.95% |
Montaña et al., 2018 [59] | SVM with k-fold cross validation; k = 10 | Classification of PD from HC | Weka | UCI machine learning repository | 54, 27 PD + 27 HC | Accuracy—94.4% |
Kuresan et al., 2019 [60] | Hidden Markov Models (HMM), SVM | Classification of PD from HC | MATLAB | Collected from participants | 40, 20 PD + 20 HC | Highest accuracy obtained from HMM with accuracy—95.16%, sensitivity—93.55%, specificity—91.67% |
Marar et al., 2018 [61] | Naïve Bayes, ANN, KNN, random forest, SVM, logistic regression, decision tree (DT) | Classification of PD from HC | R programming | Collected from participants | 31, 23 PD + 8 HC | Highest accuracy obtained from ANN—94.87% |
Sheibani, R. et al., 2019 [62] | Ensemble-based method | Classification of PD from HC | JupyterLab with python programming language | UCI machine learning repository | 31, 23 PD + 8 HC | Accuracy obtained from ensemble learning—90.6%, |
Moharkan et al., 2017 [63] | KNN | Classification of PD from HC | Python | Collected from participants | 31, 23 PD + 8 HC | Accuracy obtained from KNN—90%, |
Sztahó, D. et al., 2019 [64] | ANN, KNN, SVM with RBF and linear kernel, DNN | Classification of PD from HC | Not mentioned | UCI machine learning repository | 88, 55 PD + 33 HC | Highest accuracy obtained from SVM with RBF kernel—89.3%, sensitivity—90.2%, specificity—87.9% |
Tracy, J.M. et al., 2020 [65] | Logistic regression (L2- Regularized), random forest, Gradient Boosted trees | Classification of PD from HC | Python | mPower database | 2289, 246 PD + 2023 HC | Highest accuracy obtained from gradient boosted trees recall—79.7%, precision—90.1%, F1-score—83.6% |
Reference | Machine Learning Algorithms Used | Objective | Tools Used | Source of Data | No. of Subjects | Outcomes |
---|---|---|---|---|---|---|
Taylor, J.C. and Fenner, 2017 [66] | SVM with 10-fold cross-validation | Classification of PD from HC | MATLAB | PPMI and local database | PPMI: 657, 448 PD + 209 HC and local: 304,191 PD + 113 HC | Local data: Accuracy for local data range between 88 to 92% and for PPMI range from 95 to 97% |
Oliveira et al., 2017 [67] | SVM with linear kernel, logistic regression with LOOCV, KNN | Classification of PD from HC | C++ Programming language and MATLAB R2014a | PPMI database | 652, 443 PD + 209 HC | SVM (linear kernel) with highest accuracy rate—97.9% |
de Souza et al., 2018 [68] | OPF, naïve Bayes, SVM (RBF) with cross validation | Classification of PD from HC | Python | HandPD | 92, 74 PD + 18 HC | Highest accuracy obtained from SVM with RBF kernel—85.54% |
Drotár et al., 2016 [69] | SVM, KNN, Ensemble AdaBoost | Classification of PD from HC | MATLAB | PaHaW database | 75, 37 PD + 38 HC | Highest Accuracy obtained from SVM—81.3% with specificity—80.9% and sensitivity—87.4% |
Hsu, S.-Y. et al., 2019 [70] | SVM with RBF kernel, logistic regression | Classification of PD from HC | Weka | PACS | 202, 94 Severe PD + 102 mild PD + 6 HC | Highest accuracy obtained from SVM-RBF 83.2%, having sensitivity 82.8%, specificity 100% |
Khatamino et al., 2018 [71] | Convolutional Neural Network (CNN) | Classification of PD from HC | Python Programming | Collected from participants | 72, 57 PD + 15 HC | Accuracy—88.89% |
Kurt, İ.et al., 2019 [72] | SVM (linear and RBF kernel), KNN | Classification of PD from HC | Not mentioned | UCI machine learning repository | 72, 57 PD + 15 HC | Highest accuracy obtained from SVM (linear)—97.52%. |
Mabrouk et al., 2019 [73] | Random forest, SVM, MLP, KNN | Classification of PD from HC | Not mentioned | PPMI Database | 550, 342 PD + 157 HC + 51 Scan without evidence of dopaminergic deficit (SWEDD) | For motor features, highest accuracy obtained from SVM—78.4%, and for non-motor features, highest accuracy obtained from KNN—82.2% |
Fabian Maass et al., 2020 [74] | SVM | Classification of PD from HC | Weka | UCI machine learning repository | 157, 82 PD + 68 HC +7 Normal Pressure Hydrocephalus (NPH) | Sensitivity—80%, and specificity—83% |
Mucha, J. et al., 2018 [75] | Random forest classifier | Classification of PD from HC | Python Programming | PaHaW Database | 69, 33 PD + 36 HC | Obtained classification accuracy—90% with sensitivity 89%, and specificity 91% |
Cibulka et al., 2019 [76] | Random forest | Classification of PD from HC | Not mentioned | Collected from participants | 270, 150 PD + 120 HC | Classification error for rs11240569, rs708727, rs823156 is 49.6%, 44.8%, 49.3%, respectively. |
Pereira, C.R. et al., 2016 [77] | CNN with cross validation | Classification of PD from HC | Not mentioned | Collected from participants | 35, 14 PD + 21 HC | Accuracy rate of CNN—87.14% |
Prashanth, R. et al., 2016 [78] | Naïve Bayes, random forest SVM, boosted trees | Classification of PD from HC | MATLAB | PPMI database | 584, 401 PD + 183 HC | Highest accuracy obtained from SVM with RBF kernel—96.40% having sensitivity 97.03% and specificity 95.01% |
Shi, et al., 2018 [79] | Soft margin multiple kernel learning (SMMKL) with LOOCV | Classification of PD from HC | Not mentioned | PPMI database | 33, 15 PD + 18 HC | Accuracy rate—84.85% with sensitivity 80% and specificity 88.89% |
Trezzi, J. P et al., 2017 [80] | Logistic regression | Classification of PD from HC | Not mentioned | UCI machine learning repository | 87, 44 PD + 43 HC | Sensitivity 79.7% and specificity 80% |
Wenzel et al., 2019 [81] | CNN | Classification of PD from HC | MATLAB | PPMI database | 645, 438 PD + 207 HC | Accuracy—97.2% |
Segovia, F. et al., 2019 [82] | SVM with 10 cross validation | Classification of PD from HC | Python programming | Virgen De La Victoria Hospital, Malaga, Spain | 189, 95 PD + 94 HC | Accuracy—94.25% |
Memedi, M. et al., 2015 [83] | Random forest, logistic regression, MLP and non-linear SVM | Classification of PD from HC | Weka | PPMI database | 75, 65 PD + 10 HC | Highest accuracy obtained from MLP—84% having sensitivity—75.7% and specificity—88.9% |
Nõmm, S. et al., 2018 [84] | Random forest, decision tree, KNN, AdaBoost, SVM | Classification of PD from HC | Python programming (Scikit–Learn Library) | Collected from participants | 30, 15 PD + 15 HC | Highest accuracy obtained from Random forest—91% |
Challa et al., 2016 [85] | MLP, BayesNet, boosted logistic regression, random forest | Classification of PD from HC | Weka | Parkinson’s Progression Markers Initiative (PPMI) database | 586, 402 PD + 184 HC | Optimal result obtained from boosted logistic regression having accuracy—97.16% |
Reference | Machine Learning Algorithms Used | Objective | Tools Used | Source of Data | No. of Subjects | Outcomes |
---|---|---|---|---|---|---|
Ye, Q. et al., 2018 [90] | Least square (LS)—SVM, particle swarm optimization (PSO) | Classification of PD, ALS, HD from HC | Not mentioned | Neurology Outpatient Clinic at Massachusetts General Hospital, Boston, MA, USA [91] | 64, 15 PD + 16 HC + 13 (Amyotrophic lateral sclerosis disease (ALS)) + 20 (Huntington’s disease (HD)) | Accuracy to diagnose PD from HC—90.32%, accuracy to diagnose HD from HC—94.44%, accuracy to diagnose ALS from HC—93.10% |
Wahid, F. et al., 2015 [92] | Random forest, SVM, kernel Fisher Discriminant (KFD) | Classification of PD from HC | MATLAB R2013b | Collected from participants | 49, 23 PD + 26 HC | The accuracy obtained from random forest, SVM, and KFD was 92.6%, 80.4% and 86.2%, respectively. |
Pham, T.D.and Yan, H., 2018 [93] | LS-SVM | Classification of PD from HC | MATLAB | Laboratory for Gait and Neurodynamics | 166, 93 PD + 73 HC | Sensitivity—100% and specificity—100% |
Y. Mittra and V. Rustagi, 2018 [94] | Logistic regression, decision tree, SVM (Linear, RBF, Poly kernel), KNN | Classification of PD from HC | Not mentioned | Collected from participants | 49, 23 PD + 26 HC | Highest accuracy obtained from SVM (RBF) and random forest—90.39% |
Klomsae, A. et al., 2018 [95] | Fuzzy KNN | Classification of PD, ALS, HD from HC | Not mentioned | Neurology Outpatient Clinic at Massachusetts General Hospital, Boston, MA, USA [90] | 64, 15 PD + 20 HD + 13 ALS + 16 HC | Accuracy to diagnose PD from HC—96.43%, accuracy to diagnose HD from HC—97.22%, accuracy to diagnose ALS from HC—96.88% |
Milica et al., 2017 [96] | SVM-RBF | Classification of PD from HC | Python | Collected from participants from Institute of Neurology CCS, School of Medicine, University of Belgrade | 80, 40 PD + 40 HC | Overall accuracy from SVM-RBF—85% |
Cuzzolin, F. et al., 2017 [97] | HMM | Classification of PD from HC | Not mentioned | Collected from participants | 424, 156 PD + 268 HC | Accuracy—85.51% |
Félix, J.P. et al., 2019 [98] | SVM, KNN, naïve Bayes, LDA, decision tree | Classification of PD from HC | MATLAB R2017a | Neurology Outpatient Clinic at Massachusetts General Hospital, Boston, MA, USA [90] | 31, 15 PD + 16 HC | Highest accuracy obtained from SVM, KNN, and decision tree—96.8% |
Baby, M.S. et al., 2017 [99] | ANN | Classification of PD from HC | MATLAB | Laboratory for Gait and Neurodynamics | 166, 93 PD + 73 HC | Accuracy—86.75% |
Andrei et al., 2019 [100] | SVM | Classification of PD from HC | Not mentioned | Laboratory for Gait and Neurodynamics | 166, 93 PD + 73 HC | Accuracy—100% |
Priya, S.J. et al., 2021 [101] | ANN | Classification of PD from HC | MATLAB R2018b | Laboratory for Gait and Neurodynamics | 166, 93 PD + 73 HC | Accuracy—96.28% |
Perumal, S.V. & Sankar, R., 2016 [102] | SVM, ANN | Classification of PD from HC | MATLAB | Laboratory for Gait and Neurodynamics | 166, 93 PD + 73 HC | Average Accuracy—86.9% |
Nancy, Y. et al., 2016 [103] | Q-Backpropagated time delay neural network (Q-BTDNN) | Classification of PD from HC | MATLAB 2013 | Laboratory for Gait and Neurodynamics | 166, 93 PD + 73 HC | Accuracy—91.49% |
Oğul, et al., 2020 [104] | ANN | Classification of PD from HC | MATLAB | Laboratory for Gait and Neurodynamics | 166, 93 PD + 73 HC | Classification accuracy—98.3% |
Li, B. et al., 2020 [105] | Deep CNN | Classification of PD from HC | Not mentioned | Collected from participants | 20, 10 PD + 10 HC | Accuracy—91.9% |
Gao, C. et al., 2018 [106] | Logistic regression, random forests, SVM, XGBoost | Classification of PD from HC | Not mentioned | University of Michigan | 80, 40 PD + 40 HC | Highest accuracy obtained from random forests—79.6% |
Rehman et al., 2019 [107] | SVM, logistic regression | Classification of PD from HC | Python programming | Not mentioned | 303, 119 PD + 184 HC | Average accuracy—97% |
Natasa et al., 2020 [108] | Random forest, XGBoosting, gradient boosting, SVM(RBF), neural networks | Classification of PD from HC | Not mentioned | Collected from the participants | 10 PD | Best performance obtained from SVM(RBF) with the sensitivity value 72.34%, 91.49%, 75.00% and specificity value 87.36%, 88.51% and 93.62%, for the FoG, transition and normal activity classes, respectively. |
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Rana, A.; Dumka, A.; Singh, R.; Panda, M.K.; Priyadarshi, N.; Twala, B. Imperative Role of Machine Learning Algorithm for Detection of Parkinson’s Disease: Review, Challenges and Recommendations. Diagnostics 2022, 12, 2003. https://doi.org/10.3390/diagnostics12082003
Rana A, Dumka A, Singh R, Panda MK, Priyadarshi N, Twala B. Imperative Role of Machine Learning Algorithm for Detection of Parkinson’s Disease: Review, Challenges and Recommendations. Diagnostics. 2022; 12(8):2003. https://doi.org/10.3390/diagnostics12082003
Chicago/Turabian StyleRana, Arti, Ankur Dumka, Rajesh Singh, Manoj Kumar Panda, Neeraj Priyadarshi, and Bhekisipho Twala. 2022. "Imperative Role of Machine Learning Algorithm for Detection of Parkinson’s Disease: Review, Challenges and Recommendations" Diagnostics 12, no. 8: 2003. https://doi.org/10.3390/diagnostics12082003
APA StyleRana, A., Dumka, A., Singh, R., Panda, M. K., Priyadarshi, N., & Twala, B. (2022). Imperative Role of Machine Learning Algorithm for Detection of Parkinson’s Disease: Review, Challenges and Recommendations. Diagnostics, 12(8), 2003. https://doi.org/10.3390/diagnostics12082003