Genetic Attributes and Conservation of an Endangered Giant Water Bug Species, Diplonychus esakii Miyamoto and Lee, 1966 (Hemiptera: Belostomatidae)
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Sample Collection and COI Gene Sequencing
2.2. Genetic Diversity Analyses and Haplotype Network
2.3. A Hierarchial Analysis of Molecular Variance (AMOVA) Analysis
3. Results
3.1. Genetic Diversity
3.2. Haplotype Network Analysis
3.3. Population Genetic Differentiation
3.4. Geographic Population Structure
4. Discussion
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Order | Family | Species | Region | Conservation Status | Conservation Status Record | N | NP | NH | h (total) | h (Pop.) | π (total) | π (pop.) | Marker | Ref. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Hemiptera | Belostomatidae | Kirkaldyia deyrolli | Korea/Japan | NE/VU Category II Endangered Species | Korean Red List (NE) Japanese Red List (VU) | 35 | 5 | 5 | 0.306 | 0.000–0.833 | 0.001 | 0.000–0.071 | COI | [35] |
Appasus japonicus | Japan/Korea/China | NT | Japanese Red List | 143 | 67 | 103 | 0.992 | 0.500–1.000 | 0.021 | 0.000–0.014 | COI + 16S | [37] | ||
Appasus japonicus | Japan | NT | Japanese Red List | 530 | 33 | 26 | 0.373 | 0.100–0.667 | 0.001 | 0.000–0.018 | COI | [38] | ||
Appasus major | Japan/Korea/Russia | NE | Japanese Red List | 96 | 51 | 60 | 0.973 | 0.500–1.000 | 0.012 | 0.000–0.024 | COI + 16S | [37] | ||
Diplonychus rusticus | Thailand /Philippines | - | - | 54 | 7 | 38 | 0.922 | 0.750–1.000 | 0.011 | 0.006–0.017 | COI | [35] | ||
Lethocerus indicus | Thailand | - | - | 120 | 13 | 70 | 0.968 | 0.933–1.000 | 0.006 | 0.004–0.008 | COI | [35] | ||
Thailand | - | - | 90 | 12 | 37 | 0.932 | 0.700–1.000 | 0.005 | 0.002–0.007 | COI | [39] | |||
Belostoma angustum | Brazil | - | - | 98 | 18 | 42 | 0.901 | 0.600–1.000 | 0.003 | 0.002–0.005 | COI | [40] | ||
Coleoptera | Cerambycidae | Callipogon relictus | Korea /China /Russia | CR/ Category I Endangered Species | Korean Red List | 32 | 12 | 19 | 0.938 | 0.000–1.000 | - | 0.000–0.025 | COI | [41] |
Scarabaeidae | Copris tripartitus | Korea | LC/ Category II Endangered Species | Korean Red List | 69 | 5 | 57 | - | 0.962–1.000 | - | 0.014–0.022 | COI | [42] | |
Odonata | Libellulidae | Nannophya koreana | Korea | VU/ Category II Endangered Species | Korean Red List | 11 | 4 | 9 | 0.946 | 1.000 | 0.003 | 0.000–0.005 | COI | [43] |
Korea | VU/ Category II Endangered Species | Korean Red List | 68 | 6 | 10 | - | 0.000–0.844 | - | 0.000–0.003 | COI | [44] | |||
Korea | VU/ Category II Endangered Species | Korean Red List | 108 | 5 | 14 | - | 0.000–0.874 | - | 0.000–0.003 | COI | [45] |
Site | Abbreviation | Group | Locality | GPS | N | NH | h (SD) | π (SD) | Tajima’s D | Fu’s Fs |
---|---|---|---|---|---|---|---|---|---|---|
ST01 | GB | Yeongcheon-si, Gyeongsangbuk-do | 36°02′ N/128°56′ E | 3 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST02 | GN1 | GN SJ | Namhae-gun, Gyeongsangnam-do | 34°52′ N/127°54′ E | 13 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - |
ST03 | GN2 | GN ND | Changnyeong-gun, Gyeongsangnam-do | 35°31′ N/128°23′ E | 10 | 3 | 0.511 (0.164) | 0.113 (0.091) | 0.247 | 0.723 |
ST04 | GN3 | GN ND | Changnyeong-gun, Gyeongsangnam-do | 35°26′ N/128°29′ E | 8 | 2 | 0.250 (0.180) | 0.075 (0.070) | −1.448 | 1.415 |
ST05 | GN4 | GN ND | Changnyeong-gun, Gyeongsangnam-do | 35°33′ N/128°24′ E | 7 | 4 | 0.857 (0.102) | 0.181 (0.135) | −0.561 | −0.324 |
ST06 | GN5 | GN ND | Tongyeong-si, Gyeongsangnam-do | 34°53′ N/128°27′ E | 11 | 2 | 0.509 (0.101) | 0.153 (0.112) | 1.681 | 3.360 |
ST07 | JB | Namwon-si, Jeollabuk-do | 35°28′ N/127°21′ E | 2 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST08 | JN1 | Sinan-gun, Jeollanam-do | 35°05′ N/126°14′ E | 1 | 1 | 1.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST09 | JN2 | Sinan-gun, Jeollanam-do | 34°41′ N/125°25′ E | 2 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST10 | JN3 | Yeongam-gun, Jeollanam-do | 34°44′ N/126°25′ E | 1 | 1 | 1.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST11 | JN4 | Jindo-gun, Jeollanam-do | 34°32′ N/126°19′ E | 1 | 1 | 1.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST12 | JN5 | Haenam-gun, Jeollanam-do | 34°37′ N/126°29′ E | 1 | 1 | 1.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST13 | JN6 | Haenam-gun, Jeollanam-do | 34°35′ N/126°23′ E | 1 | 1 | 1.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST14 | BS | Sasang-gu, Busan | 35°11′ N/128°58′ E | 1 | 1 | 1.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST15 | JJ1 | JJ | Jeju-si, Jeju-do | 33°29′ N/126°44′ E | 26 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - |
ST16 | JJ2 | Jeju-si, Jeju-do | 33°29′ N/126°35′ E | 4 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST17 | JJ3 | JJ | Jeju-si, Jeju-do | 33°24′ N/126°21′ E | 29 | 2 | 0.512 (0.031) | 0.051 (0.050) | 1.595 | 1.668 |
ST18 | JJ4 | JJ | Jeju-si, Jeju-do | 33°26′ N/126°23′ E | 11 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - |
ST19 | JJ5 | JJ | Jeju-si, Jeju-do | 33°32′ N/126°42′ E | 30 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - |
ST20 | JJ6 | JJ | Jeju-si, Jeju-do | 33°30′ N/126°43′ E | 31 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - |
ST21 | JJ7 | JJ | Jeju-si, Jeju-do | 33°18′ N/126°16′ E | 30 | 2 | 0.370 (0.084) | 0.074 (0.063) | 0.955 | 2.524 |
ST22 | JJ8 | JJ | Jeju-si, Jeju-do | 33°18′ N/126°15′ E | 30 | 2 | 0.129 (0.079) | 0.013 (0.022) | −0.764 | −0.439 |
ST23 | JJ9 | Jeju-si, Jeju-do | 33°21′ N/126°18′ E | 4 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - | |
ST24 | JJ10 | JJ | Seogwipo-si, Jeju-do | 33°15′ N/126°16′ E | 19 | 3 | 0.368 (0.125) | 0.067 (0.060) | −0.607 | 0.304 |
ST25 | JJ11 | JJ | Seogwipo-si, Jeju-do | 33°13′ N/126°15′ E | 5 | 1 | 0.000 (0.000) | 0.000 (0.000) | 0 | - |
ST26 | JJ12 | JJ | Seogwipo-si, Jeju-do | 33°26′ N/126°49′ E | 30 | 2 | 0.067 (0.061) | 0.007 (0.016) | −1.147 | −1.211 |
ST27 | JJ13 | JJ | Seogwipo-si, Jeju-do | 33°21′ N/126°51′ E | 7 | 3 | 0.762 (0.115) | 0.143 (0.113) | 0.755 | 0.668 |
27 sites | 16 sites | 318 | 11 | 0.623 (0.027) | 0.298 (0.190) | −0.539 | −9.811 |
Grouping | Source of Variation | d.f. | Sum of Squares | Variance Components | Percentage of Variation | Φ-Statistics | p-Value | |
---|---|---|---|---|---|---|---|---|
I | 2 groups (by region) | Among groups | 1 | 71.403 | 0.82598 | 64.04 | ΦCT = 0.640 | <0.001 |
Among populations within groups | 14 | 75.207 | 0.27934 | 21.66 | ΦSC = 0.602 | <0.001 | ||
Within populations | 281 | 51.815 | 0.18439 | 14.30 | ΦST = 0.857 | <0.001 | ||
II | 3 groups (by 3 river systems) | Among groups | 2 | 94.831 | 1.05296 | 73.30 | ΦCT = 0.733 | <0.001 |
Among populations within groups | 13 | 51.779 | 0.19914 | 13.86 | ΦSC = 0.519 | <0.001 | ||
Within populations | 281 | 51.815 | 0.18439 | 12.84 | ΦST = 0.872 | <0.001 |
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Kim, S.Y.; Lim, C.; Kang, J.H.; Bae, Y.J. Genetic Attributes and Conservation of an Endangered Giant Water Bug Species, Diplonychus esakii Miyamoto and Lee, 1966 (Hemiptera: Belostomatidae). Insects 2024, 15, 754. https://doi.org/10.3390/insects15100754
Kim SY, Lim C, Kang JH, Bae YJ. Genetic Attributes and Conservation of an Endangered Giant Water Bug Species, Diplonychus esakii Miyamoto and Lee, 1966 (Hemiptera: Belostomatidae). Insects. 2024; 15(10):754. https://doi.org/10.3390/insects15100754
Chicago/Turabian StyleKim, Seon Yi, Changseob Lim, Ji Hyoun Kang, and Yeon Jae Bae. 2024. "Genetic Attributes and Conservation of an Endangered Giant Water Bug Species, Diplonychus esakii Miyamoto and Lee, 1966 (Hemiptera: Belostomatidae)" Insects 15, no. 10: 754. https://doi.org/10.3390/insects15100754
APA StyleKim, S. Y., Lim, C., Kang, J. H., & Bae, Y. J. (2024). Genetic Attributes and Conservation of an Endangered Giant Water Bug Species, Diplonychus esakii Miyamoto and Lee, 1966 (Hemiptera: Belostomatidae). Insects, 15(10), 754. https://doi.org/10.3390/insects15100754