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Epigenomes, Volume 8, Issue 4

2024 December - 10 articles

Cover Story: Cellular quiescence is a physiological state in which cells stop dividing and become dormant for long periods of time. This state is crucial for both multicellular and unicellular organisms since it is reversible and when needed, cells can restart growth and cell division.  In this study, we investigated how the epigenome is changed in quiescence using fission yeast as a model. We mapped several histone modifications and genome-wide RNA pol II occupancy and compared these to mRNA levels in quiescent (Q) vs. vegetative cells. Our results show that the most significant modification change in Q cells is the methylation of histone H3 at lysine 4 (H3K4me3). Many genes that become repressed in Q cells show reduced levels of H3K4me3. Finally, we demonstrate that strong gene induction in Q cells requires the Set1 methyltransferase enzyme. View this paper
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Articles (10)

  • Article
  • Open Access
2,339 Views
16 Pages

Epigenome-Wide and Methylation Risk Score Analysis of Body Mass Index Among People with HIV

  • Nanzha Abi,
  • Alexandra Young,
  • Pradeep Tiwari,
  • Junyu Chen,
  • Chang Liu,
  • Qin Hui,
  • Kaku So-Armah,
  • Matthew S. Freiberg,
  • Amy C. Justice and
  • Yan V. Sun
  • + 3 authors

12 December 2024

Background/Objectives: People with HIV (PWH) on antiretroviral therapy (ART) often gain weight, which increases their risk of type 2 diabetes and cardiovascular disease. The role of DNA methylation (DNAm) markers in obesity among PWH is understudied....

  • Article
  • Open Access
1 Citations
1,858 Views
16 Pages

DNA Imprinting and Differentially Expressed Genes in Longissimus thoracis Muscle of Bos indicus Submitted to Early Weaning Management

  • Gustavo Tinoco,
  • Gustavo Russo,
  • Rogério Curi,
  • Marcelo Vicari,
  • Paloma Melo,
  • Isabella Souza,
  • Juliana Torrecilhas,
  • Philipe Moriel,
  • Welder Baldassini and
  • Guilherme Pereira
  • + 2 authors

Background/Objectives: Early weaning management followed by energy supplementation can lead to metabolic alterations in the calf that exert long-term effects on the animal’s health and performance. It is believed that the main molecular basis u...

  • Article
  • Open Access
1 Citations
2,389 Views
18 Pages

21 November 2024

Background/Objectives: The dynamic interaction between genomic DNA, epigenetic modifications, and phenotypic traits was examined in identical twins. Environmental perturbations can induce epigenetic changes in DNA methylation, influencing gene expres...

  • Article
  • Open Access
1 Citations
2,127 Views
10 Pages

Age-Dependent DNA Methylation Variability on the X-Chromosome in Male and Female Twins

  • Qihua Tan,
  • Hikmat Alo,
  • Marianne Nygaard,
  • Mette Sørensen,
  • Alisa Saleh,
  • Jonas Mengel-From and
  • Kaare Christensen

18 November 2024

We aimed to explore the age-dependent epigenetic variability on the X-chromosome with consideration of X-chromosome inactivation by applying a sex-stratified regression analysis to DNA methylation array data on X-linked CpGs in aging identical twins....

  • Opinion
  • Open Access
1 Citations
3,065 Views
8 Pages

12 November 2024

Cryptic transcription refers to the unintended expression of non-canonical sites within the genome, producing aberrant RNA and proteins that may disrupt cellular functions. In this opinion piece, I will explore the role of histone modifications in mo...

  • Review
  • Open Access
3 Citations
4,403 Views
12 Pages

Pancreatic ductal adenocarcinoma (PDAC) remains one of the most lethal malignancies, characterized by its aggressive progression and dismal prognosis. Advances in epigenetic profiling, specifically DNA methylation analysis, have significantly deepene...

  • Article
  • Open Access
1,869 Views
16 Pages

Background: Flowers are important plant organs, and their development is correlated with yield in woody fruit trees. For Pyrus pyrifolia cultivar ‘Sucui 1’, the research on how DNA methylation accurately regulates the expression of TFs an...

  • Article
  • Open Access
2 Citations
2,786 Views
19 Pages

(1) Background: Quiescent cells are those that have stopped dividing and show strongly reduced levels of gene expression during dormancy. In response to appropriate signals, the cells can wake up and start growing again. Many histone modifications ar...

  • Article
  • Open Access
2 Citations
3,623 Views
18 Pages

Background/Objectives: One-carbon metabolism is a critical pathway for epigenetic mechanisms. Circulating biomarkers of one-carbon metabolism have been associated with changes in nuclear DNA methylation levels in individuals affected by age-related d...

  • Article
  • Open Access
2,455 Views
13 Pages

Background/Objectives: Human identical twins are born at a rate of 3–4 per 1000 live births. Many other mammals also occasionally produce monozygotic twins, referred to as sporadic polyembryony. The underlying mechanisms are unknown. Through ep...

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Epigenomes - ISSN 2075-4655