Establishment and Characterization of the First Chinese National Standard for Nucleic Acid Amplification Technology Assays for Hepatitis E Virus Nucleic Acid Detection
Abstract
:1. Introduction
2. Materials and Methods
2.1. Preparation of Candidate Standard
2.2. Homogeneity of Candidate Standard
2.3. Digital PCR (dPCR) Detection
2.4. Collaborative Study
2.5. Applicability Analysis
2.6. Stability and Accelerated Thermal Degradation Study
2.7. Statistical Analysis
3. Results
3.1. Preliminary Quantification of Candidate Standard and the Homogeneity of Candidate Standard
3.2. The Copy Number of the Candidate Standard Assessed by dPCR
3.3. Collaborative Study
3.4. Applicability Analysis
3.5. Stability and Accelerated Thermal Degradation Results
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Vial NO. | 1st Experiment | 2nd Experiment | 3rd Experiment | F Value | p Value |
---|---|---|---|---|---|
1 | 26.63 | 23.30 | 26.01 | 0.445 | 0.645 |
2 | 22.88 | 21.78 | 22.61 | ||
3 | 23.31 | 23.29 | 23.66 | ||
4 | 21.11 | 20.92 | 21.11 | ||
5 | 23.11 | 22.41 | 23.79 | ||
6 | 22.45 | 22.06 | 22.83 | ||
7 | 21.12 | 22.40 | 22.93 | ||
8 | 22.41 | 22.30 | 23.10 | ||
9 | 21.65 | 22.34 | 22.21 | ||
10 | 25.27 | 25.37 | 25.08 | ||
11 | 25.58 | 25.54 | 25.43 |
Lab NO. | 1st Extraction | 2nd Extraction |
---|---|---|
1 | 5.90 ± 0.02 | 5.87 ± 0.01 |
2 | 5.30 ± 0.03 | 5.31 ± 0.02 |
Geometric mean | 5.59 |
Lab | RNA Extraction Method | Volume of Sample for RNA Extraction (μL) | Amplification Assay Method | Region of Genome Amplified | LOD/LOQ (Copies/mL) |
---|---|---|---|---|---|
1 | Automatic Nucleic Acid Extraction Instrument (Kinghawk, Beijing, China) | 200 | Hepatitis E virus RNA detection kit (Kinghawk, Beijing, China) on ABI 7500 PCR System (Applied Biosystems, Foster City, CA, USA) | ORF2 | 1000/1000 |
2 | QIAamp Viral RNA Mini Kit (Qiagen, Hilden, Germany) | 500 | Hepatitis E virus nucleic acid detection kit (Wantai, Beijing, China) on BioRAD CFX96™ Touch (Bio-Rad, Hercules, CA, USA) | ORF2/3 | 10/10 |
3 | Promotor® Hepatitis E Virus RNA Assay Kit (Acon, Hangzhou, China) | 100 | Hepatitis E virus RNA detection kit (Acon, Hangzhou, China) on ABI 7500 PCR System (Applied Biosystems, Foster City, CA, USA) | ORF3 | 500/500 |
4 | Hepatitis E virus RNA detection kit (Bacme, Suzhou, China) | 200 | Hepatitis E virus RNA detection kit (Bacme, Suzhou, China) on Automatic Medical PCR Analysis System SLAN-96P (Hongshi, Shanghai, China) | ORF2 | 200/1000 |
Dilution of Candidate Standard | Lab 1 | Lab 2 | Lab 3 | Lab 4 |
---|---|---|---|---|
1:3 | 5.07 ± 0.04 | 5.63 ± 0.07 | 5.71 ± 0.02 | 4.59 ± 0.02 |
1:9 | 4.87 ± 0.01 | 5.09 ± 0.12 | 4.97 ± 0.05 | 4.09 ± 0.01 |
1:27 | 4.44 ± 0.03 | 4.68 ± 0.07 | 4.23 ± 0.03 | 3.61 ± 0.03 |
1:81 | 4.03 ± 0.08 | 4.19 ± 0.17 | 3.48 ± 0.01 | 3.14 ± 0.06 |
Mean | 5.75 | 6.12 | 5.80 | 5.07 |
Overall mean | 5.67 |
Kit 1 | Kit 2 | Kit 3 | Kit 4 | |
---|---|---|---|---|
LOD detected in this study | 137 copies/mL | 137 copies/mL | 30 IU/mL | 411 copies/mL |
Estimated LOD | 1000 copies/mL | 500 copies/mL | 10 IU/mL | 200 copies/mL |
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Li, M.; Wang, Y.; Li, K.; Hao, X.; Zhou, H. Establishment and Characterization of the First Chinese National Standard for Nucleic Acid Amplification Technology Assays for Hepatitis E Virus Nucleic Acid Detection. Pathogens 2023, 12, 1195. https://doi.org/10.3390/pathogens12101195
Li M, Wang Y, Li K, Hao X, Zhou H. Establishment and Characterization of the First Chinese National Standard for Nucleic Acid Amplification Technology Assays for Hepatitis E Virus Nucleic Acid Detection. Pathogens. 2023; 12(10):1195. https://doi.org/10.3390/pathogens12101195
Chicago/Turabian StyleLi, Manyu, Yan Wang, Kejian Li, Xiaotian Hao, and Haiwei Zhou. 2023. "Establishment and Characterization of the First Chinese National Standard for Nucleic Acid Amplification Technology Assays for Hepatitis E Virus Nucleic Acid Detection" Pathogens 12, no. 10: 1195. https://doi.org/10.3390/pathogens12101195
APA StyleLi, M., Wang, Y., Li, K., Hao, X., & Zhou, H. (2023). Establishment and Characterization of the First Chinese National Standard for Nucleic Acid Amplification Technology Assays for Hepatitis E Virus Nucleic Acid Detection. Pathogens, 12(10), 1195. https://doi.org/10.3390/pathogens12101195