New Variants of Squash Mosaic Viruses Detected in Human Fecal Samples
Abstract
:1. Introduction
2. Materials and Methods
2.1. Population and Specimen Collection
2.2. Viral Metagenomics
2.3. Genetic Analysis
3. Results
3.1. Viral Diversity
3.2. Phylogenetic Analysis
3.3. Genetic Distances and Similarities
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Acknowledgments
Conflicts of Interest
References
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Sequence Name | (1) | (2) | (3) | (4) | (5) | (6) | (7) | (8) | (9) | (10) |
---|---|---|---|---|---|---|---|---|---|---|
(1) 96_2011_GOIATINS | 2.20% | 1.10% | 1.50% | 5.29% | 5.29% | 5.40% | 5.40% | 6.55% | 6.55% | |
(2) 65_2015_ARAGUAINA | 1.14% | 1.10% | 0.90% | 4.36% | 4.36% | 4.46% | 4.46% | 5.71% | 5.61% | |
(3) 01_2015_ARAGUAINA | 0.98% | 1.08% | 0.60% | 4.46% | 4.46% | 4.56% | 4.56% | 5.71% | 5.71% | |
(4) 32_2014_ARAGUAINA | 0.81% | 0.76% | 0.92% | 3.94% | 3.94% | 4.05% | 4.05% | 5.19% | 5.19% | |
(5) MF166754_Australia_1996 | 4.98% | 6.12% | 5.89% | 5.72% | 0.00% | 1.40% | 1.40% | 3.74% | 2.81% | |
(6) MF166755_Australia_1996 | 5.09% | 6.23% | 6.00% | 5.83% | 0.11% | 1.40% | 1.40% | 3.74% | 2.81% | |
(7) AB054689_Japan_2001 | 4.47% | 5.54% | 5.32% | 5.15% | 2.40% | 2.51% | 0.00% | 3.43% | 2.81% | |
(8) NC_003800_Japan_2002 | 4.47% | 5.54% | 5.32% | 5.15% | 2.40% | 2.51% | 0.00% | 3.43% | 2.81% | |
(9) EU421060_China_2009 | 5.32% | 6.46% | 6.23% | 6.06% | 3.51% | 3.62% | 3.35% | 3.35% | 4.67% | |
(10) KP223324_Spain_2010 | 4.81% | 5.94% | 5.72% | 5.54% | 2.40% | 2.51% | 1.91% | 1.91% | 3.68% |
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Villanova, F.; Marcatti, R.; Bertanhe, M.; Morais, V.d.S.; Milagres, F.A.d.P.; Brustulin, R.; Araújo, E.L.L.; Tahmasebi, R.; Witkin, S.S.; Deng, X.; et al. New Variants of Squash Mosaic Viruses Detected in Human Fecal Samples. Microorganisms 2021, 9, 1349. https://doi.org/10.3390/microorganisms9071349
Villanova F, Marcatti R, Bertanhe M, Morais VdS, Milagres FAdP, Brustulin R, Araújo ELL, Tahmasebi R, Witkin SS, Deng X, et al. New Variants of Squash Mosaic Viruses Detected in Human Fecal Samples. Microorganisms. 2021; 9(7):1349. https://doi.org/10.3390/microorganisms9071349
Chicago/Turabian StyleVillanova, Fabiola, Roberta Marcatti, Mayara Bertanhe, Vanessa dos Santos Morais, Flavio Augusto de Padua Milagres, Rafael Brustulin, Emerson Luiz Lima Araújo, Roozbeh Tahmasebi, Steven S. Witkin, Xutao Deng, and et al. 2021. "New Variants of Squash Mosaic Viruses Detected in Human Fecal Samples" Microorganisms 9, no. 7: 1349. https://doi.org/10.3390/microorganisms9071349