- Article
Plant growth-promoting rhizobacteria (PGPR) offer a sustainable alternative to chemical fertilizers in rice production, yet the mechanisms underlying multifunctional growth promotion by individual strains remain insufficiently characterized. In this study, strain ST2023006 was isolated from the sugarcane rhizosphere and systematically characterized through phenotypic assays and whole-genome sequencing. The strain was identified as Pseudomonas chlororaphis based on morphological, physiological, biochemical, and multilocus sequence analyses. It exhibited tolerance to temperature (25–37 °C), pH (5.0–9.0), and salinity (≤2% NaCl). 15N isotope dilution analysis revealed nitrogen fixation contribution rates of 13.4% and 9.72% to rice roots and shoots, respectively. Pot experiments demonstrated that inoculation significantly promoted growth in two rice varieties, increasing plant height by up to 86.6%, while enhancing root surface area, root volume, and biomass accumulation. In vitro antagonism against Rhizoctonia solani and quantitative IAA analysis (59.44 µg·mL−1 IAA equivalents) provided experimental support for genome-predicted in vitro antifungal potential and auxin-related traits. Whole-genome sequencing revealed genes potentially associated with nitrogen metabolism (nifU, fixI), nutrient mobilization (potassium/zinc solubilization, siderophores), phytohormone synthesis (IAA), stress tolerance (heavy metal resistance, heat/cold shock proteins), and complete biosynthetic gene clusters for the antifungal compounds pyrrolnitrin, phenazine, and hydrogen cyanide, predicting a genomic potential for antifungal activity. This potential was directly demonstrated by in vitro antagonism assays against Rhizoctonia solani. These findings indicate that P. chlororaphis ST2023006 is a promising multifunctional PGPR candidate with demonstrated plant growth-promoting effects at the seeding stage and experimentally supported genomic potential for in vitro antifungal activity.
14 November 2026





