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Review

Breeding and Economic Aspects of Cytogenetic Screening Studies of Pigs Qualified for Reproduction

by
Barbara Danielak-Czech
1,
Anna Kozubska-Sobocińska
1,
Grzegorz Smołucha
1,* and
Marek Babicz
2
1
Department of Animal Molecular Biology, National Research Institute of Animal Production, Krakowska 1, 32-083 Balice n. Kraków, Poland
2
Institute of Animal Breeding and Biodiversity Conservation, Faculty of Biology, Animal Sciences and Bioeconomy, University of Life Sciences in Lublin, Akademicka 13, 20-950 Lublin, Poland
*
Author to whom correspondence should be addressed.
Animals 2020, 10(7), 1200; https://doi.org/10.3390/ani10071200
Submission received: 10 June 2020 / Revised: 14 July 2020 / Accepted: 14 July 2020 / Published: 15 July 2020
(This article belongs to the Section Pigs)
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Abstract

:

Simple Summary

The cytogenetic screening of pigs, carried out using continually refined cytomolecular techniques, enables a precise diagnosis of chromosomal abnormalities that cause developmental anomalies and considerably reduce the fertility (by several dozen to 100%) and performance parameters of breeding herds, resulting in substantial financial losses. Due to the potential spontaneous occurrence of chromosomal aberrations and the rapid spread of these genetic defects in the population, especially under artificial insemination conditions, it is necessary to perform cytogenetic monitoring of animals qualified for reproduction, which is an important criterion when formulating specific selection guidelines.

Abstract

Cytogenetic monitoring allows the identification and early removal of pigs affected by inherited karyotype defects from breeding herds. These abnormalities cause developmental anomalies, considerably reducing the fertility (by several dozen to 100%) and performance parameters of breeding herds, resulting in substantial financial losses. This mainly concerns reciprocal translocations, typical of pigs, which are highly prevalent (about 0.46%), generally occur de novo, and normally result in low breeding soundness of the carriers. Due to the potential spontaneous occurrence of chromosomal aberrations and the rapid spread of these genetic defects in the population, especially under artificial insemination conditions, it is necessary to perform routine karyotype screening of animals qualified for reproduction. The cytogenetic screening program for young boars, carried out using continually refined diagnostic techniques, permits a precise and reliable karyotype assessment, identification of chromosomal abnormalities, and formulation of specific selection guidelines.

1. Introduction

One of the major issues facing pig breeders is karyotype defects, which considerably reduce fertility parameters (by several dozen to 100%) and thus the productivity of breeding herds, resulting in substantial financial losses. These anomalies are generally heritable, occur spontaneously in animals with normal conformation (and semen parameters), and their hidden nature allows them to spread rapidly in populations, especially through artificial insemination [1,2,3]. These factors justify the necessity of routine karyotype screening of pigs qualified for reproduction [4].
Reliable assessment of the porcine chromosome set and detailed identification of abnormalities are based on more and more precise research techniques. This allows the early elimination of animals carrying aberrations from breeding herds. These aberrations are most often reciprocal translocations, typical of pigs, which generally occur de novo, are highly frequent (about 0.46% in populations of cytogenetically monitored boars qualified for reproduction), and normally lead to low breeding soundness of the carriers [1,5,6,7,8,9,10,11]. It should be noted that in practice, cytogenetic analysis showing a normal karyotype provides breeders with an additional criterion to qualify sows and boars for reproduction [2,4,12,13].
The application of this indicator in selection is favored by the fact that the global costs of cytogenetic monitoring of breeding stock are distinctly lower than the financial losses connected with the use of sires with chromosomal defects for breeding. As no comparative analyses in this regard have been performed in recent years, these conclusions are formulated based on French estimates, which account for the costs of karyotype screening and the economic consequences of using boars carrying reciprocal translocations in AI (artificial insemination) stations [4]. Considering the incidence of reciprocal translocations, which was determined for the group of sires qualified for reproduction as 1/200, and taking into account that one cytogenetic analysis costs about 60 euros, the cost of identifying a karyotype defect was calculated to be about 12,000 euros (200 × 60, where 60 euros is the cost of a single karyotype analysis) [4]. In contrast, the global cost of using a translocation-carrying boar in an AI station is about 20,000 euros (calculated using the actual reproductive period of the translocation-carrying boar until it is diagnosed with reduced fertility, which is determined from its mating results; not earlier than after 4 months). During this period, such an animal will produce about 160 litters (40 litters per month), which means that the number of piglets not obtained over the 4-month reproductive period will total 640 (160 × 4, where 4 is the average reduction in the number of piglets per litter as a result of carrying the translocation) [4]. This causes breeders a loss of 19,200 euros (640 × 30, where 30 euros is the price of one piglet). Financial losses are much higher when the reciprocal translocation is spread by a purebred boar from the selection or multiplication levels of the production pyramid because 50% of his offspring will, again, carry this heritable chromosomal mutation [4].
The economic calculation presented above is a concrete argument for pig breeding organizations and breeders associations to systematically eliminate carriers of chromosomal anomalies from the population. This calculation also confirms the need for routine cytogenetic screening of breeding stock as part of the genetic improvement programs of breeds and lines to improve their fertility, which largely determines the economic efficiency of breeding herds. The highest effectiveness of these activities will be ensured by the early prevention of cytogenetic defects based on the general principle of qualifying those young animals for breeding herds, which are screened for karyotype normality before their reproductive use [4,12]. In some countries, identification of chromosomal aberration carriers and their elimination from breeding is an established standard or a legal obligation arising from the implementation of tasks related to the organization of farm animal breeding and reproduction and from sire evaluation and selection programs to ensure planned breeding progress [13,14,15,16].

2. Pig Karyotype Abnormalities and Their Effect on Carrier Fertility

The domestic pig karyotype is characterized by a tendency for an increased incidence of heritable, balanced structural chromosomal rearrangements such as reciprocal, Robertsonian, and tandem translocations, as well as paracentric and pericentric inversions. They are caused by spontaneous breakages of unstable chromosomal regions induced by adverse environmental factors [17,18]. These aberrations alter chromosome morphology (generally without loss of genetic material and without phenotypic changes), and their carriers show poorer reproductive performance compared to the herd average [1,19]. This results from errors in the meiotic division during gametogenesis, in which, apart from bivalents, atypical conjugation structures with chromosomes involved in the aberration (tetravalent, trivalent, inversion loop) are formed. This determines a mutation-specific model for the segregation of genetic material into nascent oocytes or spermatozoa. As a result, apart from normal and genetically balanced germ cells, various proportions of gametes with unbalanced genetic (aneuploid gametes) are formed. After their fertilization, they form, respectively, embryos with a normal or balanced karyotype (which means that the defect is inherited by 50% of the offspring) and embryos with an unbalanced chromosome set, which die early in development (as reflected in the lower number of piglets per litter) [2,20,21,22,23,24].

2.1. Reciprocal Translocations

The most prevalent type of structural rearrangements in pigs are reciprocal translocations, which are caused by the exchange of chromatid parts between two or more nonhomologous chromosomes. These heritable chromosomal mutations affect all autosomal chromosomes and sex chromosomes, and among almost 200 translocations that have been identified to date, no two identical cases have been found in unrelated animals [1,2,4,12,13,15,16,17,18,19,25,26,27,28,29,30,31,32,33,34,35,36]. The individual consequences of each translocation depend on the morphology of the chromosomes involved, size of the rearranged fragments, and location of centromere breakpoints and positions as factors determining the gametogenesis process (meiotic conjugation and segregation) and the proportion of aneuploid gametes produced (about 40% on average). Ultimately, this determines the real extent of the adverse consequences of carrying these defects, which is assessed based on a reduction in the mean number of piglets per litter (from 5% to 100%). Given that reciprocal translocations are an important reason for the reduced fertility of sires and herds, they should be regarded as a major breeding problem [1,19,22].

2.2. Robertsonian Translocations and Tandem Fusions

Another category of karyotype defects is Robertsonian translocations and tandem fusions, which are rare or sporadic in pigs (just a few cases of translocations involving acrocentric chromosome pairs 13, 14, 15, 17, and 18, and one case of tandem-fusion translocation involving chromosome pairs 14 and 17) [1,2,4,12,13,16,19,35,37,38,39,40,41,42,43,44,45,46,47]. Robertsonian translocations always result from the fusion of acrocentric chromosomes in the pericentromeric region, whereas tandem fusions are initiated by fusions in the peritelomeric and pericentromeric regions. A direct outcome of such karyotype rearrangements is the loss of centrometic or telomeric regions, the formation of a large biarmed chromosome, and a reduction in the number of chromosomes. The gametogenesis process, due to asymmetric segregation of the trivalent, results in the production of aneuploid gametes (10% on average), which, after fertilization, give rise to embryos that die early in development, resulting in a small (about 5–22%) increase in infertility. The other 90% genetically balanced or normal gametes give rise to embryos capable of further development, including translocation carriers that transmit this defect to subsequent generations [1,19,22].

2.3. Peri- and Paracentric Inversions

Another type of structural karyotype rearrangements is peri- and paracentric inversions, which are relatively infrequent (0.06%) in pigs (more than 20 cases, including a recurrent inversion of chromosome 4) [1,2,4,12,13,16,19,21,35,38,41,48,49]. In these inversions, a chromosome segment derived from two chromatid breaks is turned 180°, leading to asymmetric segregation and unbalanced genetic material in a small portion of the produced gametes, embryos, and fetuses (about 4%), which in the postnatal period may result in a slight (several percent) reduction in fertility. In general, however, inversions cause no gametogenesis or embryogenesis disturbances, and the resulting individuals have a normal or balanced karyotype (at 50% ratio), with the latter spreading these mutations in large populations [1,19,22].

2.4. Sex Chromosome Aneuploidies and Leukocytic Chimerism

Apart from balanced chromosome mutations, pigs are sporadically diagnosed with sex chromosome aneuploidies (mainly in a mosaic form) [13,50,51,52,53], and phenotypically normal boars or individuals with hermaphroditic characteristics are increasingly diagnosed with leukocytic chimerism (XX/XY) [1,3,13,19,22,54,55,56,57,58].

3. Cytomolecular Diagnostics

Conventional cytogenetic diagnostics are based on the microscopic analysis of metaphase chromosomes obtained from in vitro lymphocyte culture that is nondifferentially stained with Giemsa, which allows the determination of the diploid number (2n = 38) and morphology of chromosomes (submetacentric, metacentric, subtelocentric, and telocentric) (Figure 1).
The next diagnostic stage is differential banding (resolution 5–10 million base pairs), which identifies 19 pairs of homologous chromosomes based on the similarity of size, morphological type, and Q-, G-, and R-banding patterns at 5–10 Mb resolution. The basic banding methods are complemented by techniques that stain selective chromosome regions: constitutive heterochromatin, nucleolar organizer regions, and telomere regions (C, Ag-I, and T banding) [2,7,13,59,60]. This diagnostic procedure determines the somatic cell karyotype of a specific individual by comparing individual banding patterns on chromosomes with the species standard of 300 Q, G, and R bands in the haploid chromosome set that has been developed as the standard karyotype of the domestic pig [61] (Figure 2).
Standard cytogenetic analysis is extended with high-resolution banding techniques (HRBTs) (resolution 2–5 Mb), which yield 600 G- or R-bands or sub-bands in the haploid set of elongated prometaphase chromosomes (obtained using replication and condensation blockers), corresponding to the standard karyotype for prometaphase chromosomes of the domestic pig [62,63].
In cases of suspected karyotype abnormalities (requiring a detailed assessment of biological consequences), classical cytogenetic diagnostics is complemented with additional laboratory procedures, which encompasses an analysis of the meiotic process in gonadal tissues (observation of conjugation processes in pachytene of prophase I and segregation in metaphases I and II under a light or electron microscope) [6,11,21,22,23,47,64,65].
In recent years, an indispensable diagnostic tool used for complex between-chromosome rearrangements and intrachromosomal micro-rearrangements (inversions, deletions, duplications) or marker chromosomes is fluorescence in situ hybridization (FISH; resolution 0.5–10 Mb) using molecular probes with different specificity levels (painting probes for whole chromosomes and their segments or probes specific for subtelomeric, telomeric and centromeric regions, and specific chromosome loci) [10,66].
The FISH technique enables the detection of DNA or RNA sequences in the analyzed material using a labeled complementary probe. This procedure consists of three basic steps: denaturation of cytogenetic preparations and molecular probes, probe hybridization, and probe detection [2,7,8,66]. This method also allows for interspecific in situ hybridizations (Zoo–FISH), where human probes are used to diagnose genetic defects or karyotype changes in different species of animals [67,68,69,70,71,72,73].
Studies of the domestic pig most often use painting probes as well as probes obtained by cloning genomic DNA inserts from genomic libraries (cosmid probes with DNA inserts < 20–40 kb; bacterial probes with DNA insert sizes of 120–150 kb) [1,2,8,60,74,75]. For pig genome analysis using the FISH technique, the most useful probes are chromosome-specific painting probes generated by flow sorting of chromosomes and PCR amplification of isolated DNA (DOP–PCR, PARM–PCR), as well as through needle or laser microdissection of chromosomes or their segments. [2,8,46,76,77,78,79,80,81,82].
The set of currently available painting probes for Sus scrofa includes flow-sorted probes for chromosomes 1, 3, 7, 13, 18, X, Y, and for the whole karyotype; probes obtained by microdissection for chromosomes 13, 15, 1p, chromosome-specific for bands 4p, 4q, and for all chromosomes; commercial probes X:Y (mix) and X and Y [8,68,77,78,79,80,81,83,84,85]. Additionally, oligonucleotide probes (primers) used in the PRINS technique (primed in situ labeling), specific for repeated DNA sequences, namely, telomeric, centromeric in acrocentric chromosomes and metacentric chromosomes (1, 2, 3, 4, 6, 7, 8, 9, 11, and X), as well as chromosomes (1, 9, 11, 14, Y), are available [8,86,87,88,89].
Recently, attempts have been made to detect unbalanced chromosomal aberrations using CGH (comparative genome hybridization) and array–CGH (microarray-based genome hybridization) methods, which identify sex chromosome aneuploidies and chromosome segments that have undergone amplification or deletion [50,90,91,92,93].
Cytogenetic monitoring based on the methods presented above is a significant element of the selection and prevention of chromosomal defects in pig breeding herds. The effectiveness of assessing pig karyotypes to find carriers of chromosomal mutations (mainly reciprocal translocations) is largely determined by the analytical screening procedures. The standard is banding methods, most often the GTG technique (G- banding method using trypsin for selective denaturation of protein structures and dye blocking) that yields chromosome-specific bands with at least 5 Mb diagnostic resolution [1,59,60,61]. A much higher experimental potential is offered by a multiprobe screening assay (developed in 2017) involving fluorescence in situ hybridization (FISH) of a panel of BAC (bacterial artificial chromosome) probes (specific for subtelomeric regions of the p and q arms), which enables precise and rapid identification of all chromosomes in one microscopic preparation [1,8,31,94]. Preliminary research has shown that this method is highly useful for diagnosing submicroscopic chromosomal rearrangements (impossible to detect with common cytogenetic tools), which may increase the detectability of reciprocal translocations, of which the frequency in the populations is probably much higher than previously estimated. For this reason, it seems especially justifiable to use this research tool prophylactically to assess the karyotypes of elite boars in AI centers (Table 1) [7,14,31,94].

4. Cytogenetic Screening of the Pig Population

Balanced chromosomal mutations, in particular reciprocal translocations associated with a drastic reduction of pig fertility, are seen as a major breeding and economic problem. Owing to this, many years ago, some countries introduced concrete selection guidelines to screen the karyotype of animals characterized by low breeding soundness or developmental abnormalities [4,12]. One example is the Scandinavian countries of Sweden and Finland, where numerous cases of reciprocal translocations were identified in the early 1990s as part of karyotype screening of animals selected based on breeding records that indicated a low number of piglets per litter (5 to 7 piglets) [64,95]. This allowed for the determination of the hypothetical frequency of the mutation carriers in the group of boars with reduced fertility (50%) and the estimation of the financial losses of USD6000 and USD25,000 incurred in one herd by sires carrying two different translocations [64]. Moreover, single cases of reciprocal translocations were identified during that period in pig populations raised in countries where no regular karyotype screening was conducted as part of national breeding evaluation programs, the result of which animals for cytogenetic tests were selected randomly or based on breeding recommendations associated with suspected developmental anomalies. One example is the reciprocal translocation that causes a slight decrease in fertility (5%), which was detected as part of pig herd monitoring in Germany (in the former GDR). In this case, the direct losses related to annual boar reproduction were estimated at around DDM28,000, and the global costs resulting from putting the offspring into breeding were much higher due to the accumulation of a small individual effect in a large population [39,95].
During the same period, at least several dozen new translocations were reported in France, where pig karyotype screening was included in the national system for the selection of breeds, lines, and individuals for high fertility [39,96]. As part of this program, in which the criterion was litter size, 800,000 litters sired by 20,000 boars were annually evaluated, and sires that produced fewer than 8 piglets in 6 successive litters were sent for cytogenetic analysis. In France, 42% of the boars with reduced fertility were then found to carry reciprocal translocations. In turn, assuming that the frequency of the boars with reduced fertility in the sire group was 0.15%, the frequency of the translocation carriers in the boar population was calculated to be 0.06% (one case per 1500 animals) [12,28,39]. Furthermore, in the 1990s, the PROSIM simulation model was used in France to analyze the economic consequences of reciprocal translocations using the example of a mutation that reduces fertility in the affected individuals by 45%. As part of this evaluation, financial outlays and revenue were compared in two equal herds of sows, one being mated to a translocation-carrying boar and the other to a boar with a normal karyotype. The direct farm losses from the failure to produce piglets (based on 65% mating success) were estimated at USD6000, and the losses resulting from the use of a translocation-carrying sire at the AI station was estimated to be USD105,000 (based on 650 semen doses per boar) [12,39,97]. In the United States, it was concluded based on estimates that the proportion of boars with low fertility was 3.7% (around 25 times that in France), which suggests the likelihood of a large number of translocation carriers. Therefore, in the 1990s, the US breeding program used the central boar selection system PIG CHAMP, based on similar assumptions as in France [39,95].
In other countries such as Hungary and The Netherlands, efforts were mainly concentrated on the cytogenetic screening of AI boars. As a result, several translocations were detected, and the frequency of chromosomal rearrangements among sires from Dutch AI centers was estimated to be 1.5%, which at that time was in excess of the expected value reported in the literature [4]. Additionally, in France, preliminary karyotype screening of 450 station boars showed the actual frequency of structural aberration carriers to be around 0.40%, much more than the hypothetical value reported earlier (0.06%), which was a strong argument for the intensification of screening tests when qualifying the boars for reproduction [4,29].
Additionally, in Poland, pig karyotype screening was not subject to any breeding rules, and such analyses (since the 1990s) could be performed only as part of boar reproductive performance tests. During that time, several hundred pigs that were randomly chosen from the population (using no fertility data, which are an indication for karyotype assessment) were subjected to screening, including only several dozen breeding and AI boars. This screening revealed the first reciprocal translocations that reduced fertility, the most fateful of which was translocation t(7;13)(q13;q46), which reduced the mean number of piglets per litter by 48% [12,39,67]. The simulated calculation of the economic consequences of carrying this defect showed that the financial losses caused by using one carrier boar in a herd are around USD8000 for natural mating, and USD162,000 for artificial insemination in the active population. These estimates are based on the loss of profit on a pig farm with an annual production of 3380 heads, or the loss of gross trade value from the sale of 1560 pigs, or the loss due to mortality of 11,267 day-old piglets [12,39].
The monitoring results from the 1990s encouraged other breeding centers to launch cytogenetic testing of boars from the reproductive sector. In Spain, based on the initial results of these analyses, the frequency of chromosomal abnormalities and structural anomalies in a commercial herd of more than 700 sires was estimated to be 3.8% and 3.3%, respectively [33,34,48,57,98,99]. In Canada, the frequency of karyotype defects among almost 900 boars qualified for reproduction in 2016 was estimated at 1.64% (with 1.36% animals carrying a translocation). Extrapolating this to a commercial scale, it was estimated that aberration-carrying piglets would occur in over 46,400 litters (out of around 2.9 million litters produced per year), which means an average loss of 4 piglets per litter. With the price of 25 CAD per piglet, this gives an annual loss of CAD4.6 million [16,35,41]. The results of this prediction analysis formed the basis for including almost 6000 boars (from Canadian breeding centers) in the program for cytogenetic screening and eradication of aberration carriers, which, in 2018, reduced the incidence of chromosomal mutations down to 0.91% [17,100].
The gradual expansion of artificial insemination in pig reproduction has increased the interest in cytogenetic monitoring of young boars qualified for reproduction in breeding centers. In some countries, considering the consequences of the high incidence of reciprocal translocations and the magnitude of financial losses, it was decided that systemic solutions for karyotype screening of all young boars before their use in AI stations would be adopted [4]. These activities are exemplified by the launching, more than 20 years ago in France, of a commercial cytogenetic platform at the l’Ecole Nationale Vétérinaire in Toulouse (ENVT–INRA), certified with the ISO 9001 standard since 2012, which allows large-scale monitoring of French pig populations [13,101,102]. The basic principle of the platform is to monitor the karyotype of young purebred boars and terminal crosses (aged 6 to 10 months) prior to use in AI stations at the request of breeders associations [4,13,15,27,28,29]. It should be noted that this laboratory concurrently performs cytogenetic screening of sires with reduced fertility parameters, and before that, it performed similar tests for the needs of breeding centers from other European countries (The Netherlands, Belgium, Germany, Spain) [13,27]. The effectiveness of the platform is evidenced by the data published in 2016–2018, according to which 39,000 boars were screened (up to 2000 per year) and over 180 cases of structural chromosomal abnormalities were identified [13,32,101]. Among the diagnosed aberrations, reciprocal translocations formed the overwhelming majority (87%), followed far behind by inversions (10%), Robertsonian translocations (2%), and other structural anomalies (1%). Apart from the structural rearrangements, chromosome aneuploidies, XX/XY cell chimerism, and sex-reversal cases were also diagnosed. For many years, the frequency of balanced chromosomal mutations has remained almost unchanged at around 0.5% (including reciprocal translocations 0.46%), and the studies did not reveal any breed trends in relation to the incidence of these changes, which confirmed their random nature [13,32,101]. As this type of rearrangement can generally lead to serious reproductive disorders (considerable reduction in litter size or infertility), it can be assumed that the ENVT–INRA program (operated in France since 1997) has saved pig producers from huge economic losses over the last 20 years. Additionally, in Poland, over the last 10 years, cytogenetic screening has included a group of several hundred young boars qualified for breeding, and the incidence of structural chromosomal rearrangements in this population, similar to France, was determined to range from 0.46% to 0.47% [12].
Recently, several European countries (The Netherlands, Spain, Sweden) that have intensified pig production through artificial insemination (using semen doses from a single sire) have emphasized the importance of boar karyotype screening as one of three components of an additional package of tests qualifying young boars for reproduction in AI centers. According to this concept, the estimated cost of implementing this package (in vitro fertilization test, assessment of nuclear chromatin, cytogenetic analysis) in an AI station with 100 boars would be around 100 euros per sire; this would allow an increase in mean litter size by 0.1 piglets and improve the economic effect by around 0.7 million euros [103].
It should be highlighted that the introduction of modern cytomolecular techniques into laboratory practice has considerably increased the diagnostic potential of the screening system, resulting in a marked increase in the number of karyotype abnormalities identified [92,103]. To date, cytogenetic screening of many pig populations around the world has resulted in the identification of over 220 structural karyotype defects, including almost 200 reciprocal translocations with a clear negative impact on fertility and economic efficiency of production [1,2,13,17,19,30,32,41,93,98,99,100,103,104,105,106,107]. It seems that the elaboration and implementation of the next screening strategies will significantly intensify the detectability of reciprocal translocations, which are likely much more frequent in breeding populations than previously estimated.

5. Conclusions

Cytogenetic diagnostics of pigs allow for effective selection that eliminates carriers of chromosomal aberrations from herds and thus reduces breeders’ financial losses, which are incomparably higher than the costs of routine karyotype testing.
The karyotype screening tests performed to date have confirmed the effectiveness of cytogenetic screening and the need for its continuation; they also fit well into the implementation of programs for sire assessment and selection, with special consideration of young boars qualified for insemination.

Author Contributions

Conceptualization, A.K.-S. and B.D.-C.; methodology, A.K.-S. and B.D.-C., resources, A.K.-S., B.D.-C., and G.S.; data curation, A.K.-S., B.D.-C., G.S., and M.B.; writing—original draft preparation, A.K.-S. and B.D.-C.; writing—review and editing, A.K.-S., B.D.-C., G.S., and M.B; project administration, A.K.-S.; funding acquisition, A.K.-S. All authors have read and agreed to the published version of the manuscript.

Funding

The publication is financed by task No. 2.3—“The use of karyotype identification in the selection of farm animals” implemented under the Multiannual Program of the Polish Ministry of Agriculture and Rural Development entitled “Protection and management of genetic resources of domestic farm animals in conditions of sustainable use” for 2016–2020.

Conflicts of Interest

The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.

References

  1. Danielak-Czech, B.; Kozubska-Sobocińska, A.; Rejduch, B. Molecular cytogenetics in the diagnostics of balanced chromosome mutations in the pig (Sus scrofa)—A review. Ann. Anim. Sci. 2016, 16, 679–699. [Google Scholar] [CrossRef] [Green Version]
  2. Raudsepp, T.; Chowdharry, B.P. Cytogenetics and chromosome maps. In The Genetics of the Pig, 2nd ed.; Rothschild, M.P., Ruvinsky, A., Eds.; CAB International: Wallingford, UK, 2011; pp. 134–178. [Google Scholar]
  3. Szczerbal, I.; Nowacka-Woszuk, J.; Dzimira, S.; Alama, A.; Iskrzak, P.; Świtoński, M. Detection and quantification of leucocyte chimerism (XX/XY) using FISH and Digital droplet PCR (ddPCR) in the offspring of highly prolific sows. Comp. Cytogenet. 2018, 12, 353. [Google Scholar]
  4. Ducos, A.; Revay, T.; Kovacs, A.; Hidas, A.; Pinton, A.; Bonnet-Garnier, A.; Molteni, L.; Słota, E.; Świtoński, M.; Arruga, M.V.; et al. Cytogenetic screening of livestock populations in Europe: An overview. Cytogenet. Genome Res. 2008, 120, 26–41. [Google Scholar] [CrossRef]
  5. Babicz, M.; Danielak-Czech, B.; Kozubska-Sobocińska, A.; Łuszczewska-Sierakowska, I.; Wawrzyniak, A.; Grzebalska, A.M.; Kropiwiec-Domańska, K. Cytogenetic and molecular studies in conservation breeding of Pulawska breed pigs. Med. Weter. 2017, 73, 395–398. (In Polish) [Google Scholar] [CrossRef] [Green Version]
  6. Basrur, P.K.; Stranzinger, G. Veterinary cytogenetics: Past and perspective. Cytogenet. Genome Res. 2008, 120, 11–25. [Google Scholar] [CrossRef] [PubMed]
  7. Iannuzzi, L.; Di Berardino, D. Tools of the trade: Diagnostics and research in domestic animal cytogenetics. J. Appl. Genet. 2008, 49, 357–366. [Google Scholar] [CrossRef] [PubMed]
  8. Rubes, J.; Pinton, A.; Bonnet-Garnier, A.; Fillon, V.; Musilova, P.; Michalova, K.; Kubickova, S.; Ducos, A.; Yerle, M. Fluorescence in situ hybridization applied to domestic animal cytogenetics. Cytogenet. Genome Res. 2009, 126, 34–48. [Google Scholar] [CrossRef]
  9. Kozubska-Sobocinska, A.; Smołucha, G.; Danielak-Czech, B. Early Diagnostics of freemartinism in Polish Holstein-Friesian female calves. Animals 2019, 9, 971. [Google Scholar] [CrossRef] [Green Version]
  10. Khare, V.; Khare, A. Modern approach in animal breeding by use of advanced molecular genetic techniques. Inter. J. Livestig. Res. 2017, 7, 1–22. [Google Scholar] [CrossRef]
  11. Villagomez, D.A.F.; Parma, P.; Radi, O.; Meo, G.D.; Pinton, A.; Iannuzzi, L.; King, W.A. Classical and Molecular Cytogenetics of Disorders of Sex Development in Domestic Animals. Cytogenet. Genome Res. 2009, 126, 110–131. [Google Scholar] [CrossRef]
  12. Danielak-Czech, B.; Słota, E. Karyotype control system of AI boars in Poland: The current survey. Ann. Anim. Sci. 2008, 8, 255–262. [Google Scholar]
  13. Ducos, A.; Calgaro, A.; Mouney-Bonnet, N.; Loustau, A.M.; Revel, C.; Barasc, H.; Mary, N.; Pinton, A. Contrôle chromosomique des populations porcines françaises Bilan de 20 années d’activités de la plateforme de cytogénétique ENVT-INRA. 2017. Available online: http://www.journees-recherche-porcine.com/texte/2017/genetique/G09.pdf (accessed on 15 July 2020).
  14. Kozubska-Sobocińska, A.; Danielak-Czech, B. Legitimacy of systematic karyotype evaluation of cattle qualified for reproduction. Med. Weter. 2017, 73, 451–455. (In Polish) [Google Scholar] [CrossRef] [Green Version]
  15. Pinton, A.; Calgaro, A.; Bonnet, N.; Mary, N.; Dudez, A.M.; Barasc, H.; Plard, C.; Yerle, M.; Ducos, A. Chromosomal control of pig populations in France: 2007–2010 survey. Journées Rech. Porcine 2012, 44, 43–44. (In French) [Google Scholar]
  16. Quach, A.T.; Revay, T.; Villagomez, D.A.F.; Macedo, M.P.; Sullivan, A.; Maignel, L.; Wyss, S.; Sullivan, B.; King, W.A. Prevalence and consequences of chromosomal abnormalities in Canadian commercial swine herds. Genet. Sel. Evol. 2016, 48, 66. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  17. Donaldson, B.; Villagomez, D.A.F.; Revay, T.; Rezaei, S.; Kin, W.A. Non-random distribution of reciprocal translocation breakpoints in the pig genome. Genes 2019, 10, 769. [Google Scholar] [CrossRef] [Green Version]
  18. Danielak-Czech, B.; Słota, E.; Świtoński, M. Identification of the first reciprocal translocations in the pig population bred in Poland. In Proceedings of the 11th European Colloquium on Cytogenetic of Domestic Animals, Copenhagen, Denmark, 2–5 August 1994; pp. 20–24. [Google Scholar]
  19. Szczerbal, I.; Świtonski, M. Chromosome abnormalities in domestic animals as causes of disorders of sex development or impaired fertility. In Insights from Animal Reproduction; Careira, P.R., Ed.; InTechOpen: London, UK, 2016; pp. 207–225. [Google Scholar]
  20. Słota, E.; Danielak-Czech, B.; Pietraszewska, J.; Kozubska-Sobocińska, A. Preliminary identification of the fragile X in two crossbred cows. Vet. Med. 2000, 45, 308–310. [Google Scholar]
  21. Świtoński, M.; Danielak-Czech, B.; Słota, E.; Sysa, P. Lack of pairing loop formation in synaptonemal complex preparation of a boar carrying an inversion. Hereditas 1998, 128, 83–85. [Google Scholar] [CrossRef]
  22. Świtoński, M.; Stranzinger, G. Studies of synaptonemal complexes in farm mammals—A review. J. Hered. 1998, 89, 473–480. [Google Scholar] [CrossRef] [Green Version]
  23. Villagόmez, D.A.F.; Pinton, A. Chromosomal abnormalities, meiotic behaviour and fertility in domestic animals. Cytogenet. Genome Res. 2008, 120, 69–80. [Google Scholar]
  24. Yimer, N.; Rosnina, Y. Chromosomal anomalies and infertility in farm animals: A review. Pertanika J. Trop. Agric. Sci. 2014, 37, 1–18. [Google Scholar]
  25. Barasc, H.; Congras, A.; Mary, N.; Trouilh, L.; Marquet, V.; Ferchaud, S.; Raymond-Letron, I.; Calgaro, A.; Loustau-Dudez, A.M.; Mouney-Bonne, N.; et al. Meiotic pairing and gene expression disturbance in germ cells from an infertile boar with a balanced reciprocal autosome-autosome translocation. Chromosome Res. 2016, 24, 511–527. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  26. Danielak-Czech, B.; Słota, E. A new case of reciprocal translocation t(10;13)(q16;q21) diagnosed in an AI boar. J. Appl. Genet. 2007, 48, 379–382. [Google Scholar] [CrossRef] [PubMed]
  27. Ducos, A.; Berland, H.M.; Bonnet, N.; Calgaro, A.; Billoux, S.; Mary, N.; Garnier-Bonnet, A.; Darré, R.; Pinton, A. Chromosomal control of pig population in France: 2002–2006 survey. Genet. Sel. Evol. 2007, 39, 583–597. [Google Scholar] [CrossRef] [Green Version]
  28. Ducos, A.; Berland, H.M.; Pinton, A.; Seguela, A.; Blanc, M.F.; Darre, A.; Sans, P.; Darre, R. Les translocations réciproques chez le porc: État des lieux et perspectives. J. Rech. Porcine 1997, 29, 375–382. [Google Scholar]
  29. Ducos, A.; Pinton, A.; Berland, H.M.; Sequela, A.; Yerle, M.; Sequela, A.; Brun-Barronat, C.; Bonnet, N.; Darre, R. Contrôle chromosomique des populations porcines an France: Bilan de cinq années d activité. J. Rech. Porcine 2002, 34, 269–275. [Google Scholar]
  30. Feve, K.; Foissac, S.; Pinton, A.; Mompart, F.; Esquerre, D.; Faraut, T.; Yerle, M.; Riquet, J. Identification of a t(3;4)(p1.3;q1.5) translocation breakpoint in pigs using somatic cell hybrid mapping and high-resolution mate-pair sequencing. PLoS ONE 2017, 12, e0187617. [Google Scholar] [CrossRef] [Green Version]
  31. O’Connor, R.E.; Fonseka, G.; Frodsham, R.; Archibald, A.L.; Lawrie, M.; Walling, G.A.; Griffin, D.K. Isolation of subtelomeric sequences of porcine chromosomes for translocation screening reveals errors in the pig genome assembly. Anim. Genet. 2017, 48, 395–403. [Google Scholar] [CrossRef]
  32. Pinton, A.; Calgaro, A.; Mary, N.; Barasc, H.; Bonnet, N.; Revel, C.; Ferchaud, S.; Letron, I.R.; Faraut, T.; Acloque, H.; et al. Meiotic and gene expression analyses in case of t(1;15) azoospermic boar. Comp. Cytogenet. 2018, 12, 343. [Google Scholar]
  33. Rodriquez, A.; Sanz, E.; De Mercado, E.; Gomez, E.; Martin, M.; Carrascosa, C.; Gomez-Fidalgo, E.; Villagomez, D.A.F.; Sanchez-Sanchez, R. Reproductive consequences of a reciprocal chromosomal translocation in two Duroc boars used to provide semen for artificial insemination. Theriogenology 2010, 74, 67–74. [Google Scholar] [CrossRef]
  34. Sanchez Sanchez, R.; De la Cruz Vigo, P.; Gomez Fidalgo, E.; Perez Garnelo, S.; Gonzales-Bulnes, A.; Martin-Lluch, M. Frequency of chromosomal rearrangements in breeding males from boar studs. Chromosome Res. 2016, 24 (Suppl. 1), S16. [Google Scholar]
  35. Villagomez, D.A.F.; Quach, A.T.; Revay, T.; St John, E.; Rezaei, S.; King, W.A. Prevalence and reproductive consequences of chromosomal abnormalities in Canadian swine herds. Chromosome Res. 2016, 24 (Suppl. 1), S17–S18. [Google Scholar]
  36. Danielak-Czech, B.; Świtoński, M.; Słota, E. First identification of reciprocal translocations in Polish pigs. J. Anim. Breed. Genet. 1997, 114, 69–78. [Google Scholar] [CrossRef] [PubMed]
  37. Caputi-Jambrenghi, A.; Genualdo, V.; Giannico, F.; Castiglioni, B.; Pizzi, F.; Marletta, D.; Iannuzzi, A. Analysis of segregation and aneuploidy in a hybrid boar heterozygous carrier of a rob(15;17) by dual-colourSperm-FISH: Preliminary studies. Comp. Cytogenet. 2018, 12, 333–334. [Google Scholar]
  38. Danielak-Czech, B.; Kozubska-Sobocińska, A.; Rejduch, B. Diagnosis of tandem fusion translocation in the boar using FISH technique with human painting probes. Ann. Anim. Sci. 2010, 10, 361–366. [Google Scholar]
  39. Danielak-Czech, B.; Kozubska-Sobocińska, A.; Słota, E.; Rejduch, B.; Okularczyk, S. Decrease in pig fertility as result of reciprocal translocations and assisted economic effects on the basis of rcp(7;13)(q13;q46). J. Appl. Genet. 1996, 36, 373–384. [Google Scholar]
  40. Słota, E.; Kozubska-Sobocińska, A.; Danielak-Czech, B.; Rejduch, B.; Kowol, P.; Żyga, A. A note on cytogenetic monitoring of Polish Red cattle. J. Anim. Feed Sci. 2004, 13, 65–71. [Google Scholar] [CrossRef]
  41. Quach, T.A.; Villagómez, D.A.F.; Coppola, G.; Pinton, A.; Hart, E.J.; Reyes, E.R.; Basrur, P.K.; King, W.A. A cytogenetic study of breeding boars in Canada. Cytogenet Genome Res. 2009, 126, 271–280. [Google Scholar] [CrossRef]
  42. Rejduch, B.; Danielak-Czech, B.; Kozubska-Sobocińska, A. FISH-based comparative analysis of human and porcine chromosome region involving obesity-related genes. Ann. Anim. Sci. 2010, 10, 367–372. [Google Scholar]
  43. Rejduch, B.; Kozubska-Sobocińska, A.; Danielak-Czech, B. Use of human painting probes for identification of centric fusion in wild boar. Chromosome Res. 2010, 18, 727–728. [Google Scholar]
  44. Danielak-Czech, B.; Słota, E.; Kozubska-Sobocińska, A.; Rejduch, B. A unique chromosome mutation in pigs: Tandem fusion-translocation. Chromosome Res. 2010, 18, 715–716. [Google Scholar]
  45. Danielak-Czech, B.; Słota, E. Tandem fusion-translocation: A unique karyotype rearrangement in the domestic pig. Ann. Anim. Sci. 2008, 8, 343–348. [Google Scholar]
  46. Danielak-Czech, B.; Słota, E.; Bugno, M.; Pieńkowska-Schelling, A.; Schelling, C. Application of chromosome microdissection and chromosome painting techniques for reciprocal translocations diagnosis in pigs. Ann. Anim. Sci. 2006, 6, 219–224. [Google Scholar]
  47. Rejduch, B.; Słota, E.; Sysa, P.; Kwaczyńska, A.; Kozubska-Sobocińska, A.; Danielak-Czech, B. Diagnosis of a new reciprocal translocation rcp(9;14)(q14;q23) in infertile boar after the synaptonemal complex analysis. Ann. Anim. Sci. 2003, 3, 269–278. [Google Scholar]
  48. Sanchez Sanchez, R.; Martin-Lluch, M.; Gomez Fidalgo, E.; Perez Garnelo, S.; Gonzales-Bulnes, A.; De la Cruz Vigo, P. Several cases of homozygous pericentric inversion in a population of hyperprolific breeding sows. Chromosome Res. 2016, 24 (Suppl. 1), S15. [Google Scholar]
  49. Danielak-Czech, B.; Kozubska-Sobocińska, A.; Słota, E.; Rejduch, B.; Kwaczyńska, A. Preliminary identification of pair 1 chromosome rearrangement in the Polish Landrace sow. Cytogenet. Cell Genet. 1996, 74, 230. [Google Scholar]
  50. Hornak, M.; Oracova, E.; Hulinska, P.; Urbankova, L.; Rubes, J. Aneuploidy detection in pigs using comparative genomic hybridization: From the oocytes to blastocysts. PLoS ONE 2012, 7, e30335. [Google Scholar] [CrossRef] [Green Version]
  51. Pinton, A.; Barasc, H.; Raymond-Letron, I.; Bordedebat, M.; Mary, N.; Massip, K.; Bonnet, N.; Calgaro, A.; Dudez, A.M.; Feve, K.; et al. Meiotic studies of a 38,XY/39,XXY mosaic boar. Cytogenet. Genome Res. 2011, 133, 202–208. [Google Scholar] [CrossRef]
  52. Quilter, C.R.; Wood, D.; Southwood, O.I.; Griffin, D.K. X/XY/XYY mosaicism as a cause of subfertility in boars: A single case study. Anim. Genet. 2003, 34, 51–54. [Google Scholar] [CrossRef]
  53. Słota, E.; Kozubska-Sobocińska, A.; Kościelny, M.; Danielak-Czech, B.; Rejduch, B. Detection of the XXY trisomy in a bull by using sex chromosome painting probes. J. Appl. Genet. 2003, 44, 379–382. [Google Scholar]
  54. Barasc, H.; Ferchaud, S.; Mary, N.; Cucchi, M.A.; Lucena, A.N.; Letron, I.R.; Calgaro, A.; Bonnet, N.; Dudez, A.M.; Yerle, M.; et al. Cytogenetic analysis of somatic and germinal cells from 38,XX/38,XY phenotypically normal boars. Theriogenology 2014, 81, 368–372. [Google Scholar] [CrossRef]
  55. Kozubska-Sobocińska, A.; Danielak-Czech, B.; Rejduch, B. Cytogenetic and molecular diagnostics of XX/XY chimerism in cattle, sheep, and goats—A review. Ann. Anim. Sci. 2016, 16, 989–1005. [Google Scholar] [CrossRef] [Green Version]
  56. Kozubska-Sobocińska, A.; Rejduch, B. Identification of heterosomes in spermatozoa of rams with 54,XX/54,XY chimerism. Vet. Med. 2008, 53, 250–254. [Google Scholar] [CrossRef] [Green Version]
  57. Sanchez Sanchez, R.; De la Cruz Vigo, P.; Gomez Fidalgo, E.; Perez Garnelo, S.; Gonzales-Bulnes, A.; Martin-Lluch, M. A case of mosaicism (38XY/38XX) in a boar from an insemination center of Iberian pig population. Chromosome Res. 2016, 24 (Suppl. 1), S11. [Google Scholar]
  58. Szczerbal, I.; Dzimira, S.; Nowacka-Woszuk, J.; Świtoński, M. Leucocyte chimerism (XX/XY) in pigs with severe disorders of sex development. Chromosome Res. 2016, 24 (Suppl. 1), S10. [Google Scholar]
  59. Bickmore, W.A. Karyotype analysis and chromosome banding. In Encyclopedia of Life Sciences; John Wiley & Sons, Ltd.: Chichester, UK, 2001; pp. 1–7. [Google Scholar]
  60. Vorsanowa, S.G.; Burov, Y.B.; Iourov, I.Y. Human interphase chromosomes: A review of available molecular cytogenetic technologies. Mol. Cytogenet. 2010, 3, 2–15. [Google Scholar]
  61. Gustavsson, I. Standard karyotype of domestic pig. Hereditas 1988, 109, 151–157. [Google Scholar] [CrossRef] [PubMed]
  62. Galman, O.; Yerle, M.; Echard, E. The high resolution G-banded karyotype of Sus scrofa domestica L. Genet. Sel. Evol. 1991, 23, 113–116. [Google Scholar] [CrossRef]
  63. Yerle, M.; Galman, O.; Echard, G. The high resolution GTG-banding pattern of pig chromosomes. Cytogenet Cell Genet. 1991, 56, 45–47. [Google Scholar] [CrossRef]
  64. Gustavsson, I. Chromosomes of the pig. Adv. Vet. Sci. Comp. Med. 1990, 34, 73–107. [Google Scholar]
  65. Rejduch, B.; Kozubska-Sobocińska, A.; Słota, E.; Sysa, P.; Wrzeska, M. Evaluation of chromosomal changes in gonads and their effect on boar fertility. Med. Weter. 2006, 62, 931–932. (In Polish) [Google Scholar]
  66. Pinkel, D.; Straume, T.; Gray, J.W. Cytogenetic analysis using quantitative, high sensitive, fluorescence hybridization. Proc. Nat. Acad. Sci. USA 1986, 83, 2934–2938. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  67. Danielak-Czech, B.; Rejduch, B.; Kozubska-Sobocińska, A. Identification of telomeric sequences in pigs with rearranged karyotype using PRINS technique. Ann. Anim. Sci. 2013, 13, 495–502. [Google Scholar] [CrossRef]
  68. Chowdhary, B.P.; Raudsepp, T. Chromosome painting in farm, pet and wild animal species. Methods Cell Sci. 2001, 23, 37–55. [Google Scholar] [CrossRef]
  69. Fronicke, L.; Wienberg, J. Comparative chromosome painting defines the high rate of karyotype changes between pigs and bovids. Mamm. Genome 2001, 12, 442–449. [Google Scholar] [CrossRef] [PubMed]
  70. Kozubska-Sobocińska, A.; Słota, E.; Pieńkowska, A. The application of FISH technique for diagnosing leukocyte chimerism in sheep. Med. Weter. 2003, 59, 987–989. (In Polish) [Google Scholar]
  71. Goureau, A.; Yerle, M.; Schmitz, A.; Riquet, D.; Milan, D.; Pinton, P.; Frelat, G.; Gellin, J. Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics 1996, 36, 252–262. [Google Scholar] [CrossRef]
  72. Kozubska-Sobocińska, A.; Rejduch, B.; Danielak-Czech, B.; Babicz, M.; Bąk, A. Comparative sex chromosomes hybridizations in Ruminantia. Ann. Anim. Sci. 2012, 12, 495–500. [Google Scholar] [CrossRef] [Green Version]
  73. Danielak-Czech, B.; Kozubska-Sobocińska, A.; Kruczek, K.; Babicz, M.; Rejduch, B. Physical mapping of the HSPB genes in the domestic and wild pigs. Chromosome Res. 2014, 22, 413. [Google Scholar]
  74. Fahrenkrug, S.C.; Rohrer, G.A.; Freking, B.A.; Smith, T.P.L.; Osoegawa, K.; Shu, C.L.; Catanese, J.J.; de Jong, P.J. A porcine BAC library with tenfold genome coverage: A resource for physical and genetic map integration. Mamm. Genome 2001, 12, 472–474. [Google Scholar] [CrossRef] [Green Version]
  75. Shizuya, H.; Kouros-Mehr, H. The development of applications of the bacterial artificial chromosome cloning system. Keio J. Med. 2001, 50, 21–30. [Google Scholar] [CrossRef]
  76. Telenius, H.; Pelmear, A.H.; Tunnacliffe, A.; Carter, N.P.; Behmel, A.; Ferguson-Smith, M.A.; Nordenskjold, M.; Pfragner, R.; Ponder, B.A. Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes. Genes Chromosome Cancer 1992, 4, 257–263. [Google Scholar] [CrossRef]
  77. Langford, C.F.; Telenius, H.; Miller, N.G.; Thomsen, P.D.; Tucker, E.M. Preparation of chromosome-specific paints and complete assignment of chromosome in the pig flow-sorted karyotype. Anim. Genet. 1993, 24, 261–267. [Google Scholar] [CrossRef] [PubMed]
  78. Yerle, M.; Schmitz, A.; Milan, D.; Chaput, B.; Monteagudo, L.; Vaiman, M.; Frelat, G.; Gellin, J. Accurate characterization of porcine bivariate flow karyotype by PCR and fluorescence in situ hybridization. Genomics 1993, 16, 97–103. [Google Scholar] [CrossRef] [PubMed]
  79. Pinton, A.; Ducos, A.; Yerle, M. Chromosomal rearrangements in cattle and pigs revealed by chromosome microdissection and chromosome painting. Genet. Sel. Evol. 2003, 35, 685–696. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  80. Kubickova, S.; Cernohorska, H.; Musilova, P.; Rubes, J. The use of laser microdissection for the preparation of chromosome-specific painting probes in farm animals. Chromosome Res. 2002, 10, 571–577. [Google Scholar] [CrossRef]
  81. Chaudhary, R.; Kijas, J.; Raudsepp, T.; Guan, X.Y.; Zhang, H.; Chowdhary, B.P. Microdissection of pig chromosomes: Dissection of whole chromosomes, arms and bands for construction of paints and libraries. Hereditas 1998, 128, 265–271. [Google Scholar] [CrossRef]
  82. Dolezel, J.; Vrana, J.; Safar, J.; Bartos, J.; Kubalakova, M.; Simkova, H. Chromosomes in the flow to simplify genome analysis. Funct. Integr. Genom. 2012, 12, 397–416. [Google Scholar] [CrossRef] [Green Version]
  83. Langford, C.F.; Telenius, H.; Carter, N.P.; Miller, N.G.; Tucker, E.M. Chromosome painting using chromosome-specific probes from flow-sorted pig chromosomes. Cytogenet. Cell Genet. 1992, 61, 221–223. [Google Scholar] [CrossRef]
  84. Schmitz, A.; Chardon, P.; Gainche, I.; Chaput, B.; Guilly, M.N.; Frelat, G.; Vaiman, M. Pig standard bivariate flow karyotype and peak assignment for chromosomes X, Y, 3, and 7. Genomics 1992, 14, 357–362. [Google Scholar] [CrossRef]
  85. Dixon, S.C.; Miller, N.G.; Carter, N.P.; Tucker, E.M. Bivariate flow cytometry of farm animal chromosomes: A potential tool for gene mapping. Anim. Genet. 1992, 23, 203–210. [Google Scholar] [CrossRef]
  86. Pellestor, F.; Girardet, A.; Lefort, G.; Andreo, B.; Charlieu, J.P. PRINS as a method for rapid chromosomal labeling on human spermatozoa. Mol. Reprod. Dev. 1995, 40, 333–337. [Google Scholar] [CrossRef] [PubMed]
  87. Gu, F.; Handkjaer, I.; Gustavsson, I.; Bolund, L. A signal of telomeric sequences on porcine chromosome 6q21-q22 detected by primed in situ labeling. Chromosome Res. 1996, 4, 251–252. [Google Scholar] [CrossRef] [PubMed]
  88. Miller, J.R.; Hindnkjaer, J.; Thomsen, P.D. A chromosomal basis for the differential organization of a porcine centromere-specific repeat. Cytogenet. Cell Genet. 1993, 62, 37–41. [Google Scholar] [CrossRef] [PubMed]
  89. Rogel-Gaillard, C.; Hayes, H.; Coullin, P.; Chardon, P.; Vaiman, M. Swine centromeric DNA repeats revealed by primed in situ (PRINS) labeling. Cytogenet. Cell Genet. 1997, 79, 79–84. [Google Scholar] [CrossRef]
  90. Apiou, F.; Vincent-Naulleau, S.; Spatz, A.; Vielh, P.; Geffrotin, C.; Frelat, G.; Dutrillaux, B.; Le Chalony, C. Comparative genomic hybridization analysis of hereditary swine cutaneous melanoma revealed loss of the swine 13q36-49 chromosomal region in the nodular melanoma subtype. Int. J. Cancer 2004, 110, 232–238. [Google Scholar] [CrossRef]
  91. Hornak, M.; Hulinska, P.; Musilova, P.; Kubickova, S.; Rubes, J. Investigation of chromosome aneuploidies in early porcine embryos using comparative genomic hybridization. Cytogenet. Genome Res. 2009, 126, 210–216. [Google Scholar] [CrossRef]
  92. Liang, D.; Wang, Y.; Ji, X.; Hu, H.; Zhang, J.; Meng, L.; Lin, Y.; Ma, D.; Jiang, T.; Jiang, H.; et al. Clinical application of whole-genome low-coverage next-generation sequencing to detect and characterize balanced chromosomal translocations. Clin Genet. 2017, 91, 605–610. [Google Scholar] [CrossRef]
  93. Grahofer, A.; Letko, A.; Hafliger, I.M.; Jagannathan, V.; Ducos, A.; Richard, O.; Peter, V.; Nathues, H.; Drogemuller, C. Chromosomal imbalance in pigs showing a syndromic form of cleft palate. BMC Genomics 2019, 20, 349. [Google Scholar] [CrossRef] [Green Version]
  94. O’Connor, R.E.; Fonseka, G.; Frodsham, R.; Archibald, A.L.; Lawrie, M.; Walling, G.A.; Griffin, D.K. Development of a porcine chromosomal translocation screening device reveals errors in the pig genome assembly. Chromosome Res. 2016, 24 (Suppl. 1), S33. [Google Scholar]
  95. Long, S. Reciprocal translocations in the pig (Sus scrofa): A review. Vet. Rec. 1991, 128, 275–278. [Google Scholar] [CrossRef]
  96. Tribout, T.; Ducos, A.; Maygnel, L.; Bidanel, J.P. Utilisation du système d’information BLUP pour la détection des verrats porteurs d’anomalies chromosomiques. Techniporc 2000, 23, 19–24. [Google Scholar]
  97. Bonneau, M.; Boscher, J.; Popescu, C.P. Consequences zootechniques des translocations reciproques dans un troupeau experimental porcin: Incidence economique. Journées Rech. Porcine 1991, 23, 395–400. [Google Scholar]
  98. Martin-Lluch, M.; De la Cruz-Vigo, P.; Ortuno, V.; Gomez-Fidalgo, E.; Carrascosa, C.; Sánchez-Sánchez, R. Cytogenetic study of a reciprocal translocation (1;6)(q17;p11) in a subfertile boar. Chromosome Res. 2014, 22, 393–437. [Google Scholar]
  99. Sanchez-Sánchez, R.; Gomez-Fidalgo, E.; Perez-Garnelo, S.; Martin-Lluch, M.; Cruz-Vigo, P.D.L. Prevalence of chromosomal aberrations in breeding pigs in Spain. Reprod Dom Anim. 2019, 54 (Suppl. 4), 98–101. [Google Scholar] [CrossRef] [PubMed]
  100. King, W.A.; Donaldson, B.; Rezaei, S.; Schmidt, C.; Revay, T.; Villagomez, D.A.; Kuschke, K. Chromosomal abnormalities in swine and their impact on production and profitability. In Comprehensive Biotechnology, 3rd ed.; Moo-Young, M., Ed.; Pergamon Press: Oxford, UK, 2019; pp. 508–518. [Google Scholar]
  101. Calgaro, A.; Mouney-Bonnet, N.; Loustau, A.M.; Revel, C.; Barasc, H.; Mary, N.; Ducos, A.; Pinton, A. Chromosomal control of pig populations in France. Chromosome Res. 2016, 24 (Suppl. 1), S16. [Google Scholar]
  102. Available online: http://www.envt.fr/menu-og-34/plateforme-de-cytogénetique-animale (accessed on 15 July 2020).
  103. Roca, J.; Broekhuijse, M.L.W.J.; Parrilla, I.; Rodriguez-Martinez, H.; Martinez, E.A.; Bolarin, A. Boar differences in artificial insemination outcomes: Can they be minimized? Reprod. Dom. Anim. 2015, 50 (Suppl. 2), 48–55. [Google Scholar] [CrossRef] [Green Version]
  104. Villagomez, D.A.; Revay, T.; Donaldson, B.; Rezaei, S.; Pinton, A.; Palomino, M.; King, W.A. Azoospermia and testicular hypoplasia in a boar carrier of a novel Y-autosome translocation. Sex. Dev. 2017, 11, 46–51. [Google Scholar] [CrossRef] [PubMed]
  105. Danielak-Czech, B.; Słota, E. Mutagen-induced chromosome instability in farm animals. J. Anim. Feed Sci. 2004, 13, 257–267. [Google Scholar] [CrossRef] [Green Version]
  106. Genualdo, V.; Rossetti, C.; Pauciullo, A.; Musilova, P.; Incaenato, D.; Perucatti, A. A de novo reciprocal chromosomal translocation t(3;6)(p14;q26) in the black Lucano pig. Reprod. Domest. Anim. 2020. [Google Scholar] [CrossRef]
  107. Raudsepp, T.; Chowdhary, B.P. Chromosome aberrations and fertility disorders in domestic animals. Annu. Rev. Anim. Biosci. 2016, 4, 15–43. [Google Scholar] [CrossRef]
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Figure 1. Metaphase chromosomes of boar with 38 XY karyotype-conventional Giemsa staining.
Figure 1. Metaphase chromosomes of boar with 38 XY karyotype-conventional Giemsa staining.
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Figure 2. Pig metaphase chromosomes stained differentially using banding techniques G bands (A), Q bands (B), R bands (C), C bands (D), Ag-I bands (E), and T bands (F).
Figure 2. Pig metaphase chromosomes stained differentially using banding techniques G bands (A), Q bands (B), R bands (C), C bands (D), Ag-I bands (E), and T bands (F).
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Table
Table 1. Cytomolecular diagnostics methods and the types of karyotype abnormalities.
Table 1. Cytomolecular diagnostics methods and the types of karyotype abnormalities.
Pig Karyotype AbnormalitiesEffect on Carrier FertilityCytomolecular DiagnosticsComments
Reciprocal translocationsReduced fertility of sires and herds (5–100%)Giemsa staining, differential banding techniques (GTG, RBA, QFQ), FISHTechniques used for routine analysis: Giemsa staining, GTG technique, and FISH; in special cases, a multiprobe system for diagnostics of cryptic micro-rearrangement
Robertsonian translocations and tandem fusionsReduced fertility (5–22%)Giemsa staining, differential banding techniques (GTG, RBA, QFQ), FISHTechniques used for routine analysis: Giemsa staining, GTG technique, and FISH in difficult cases
Peri- and paracentric inversionsReduced fertility (less than 10%)Giemsa staining, differential banding techniques (GTG, RBA, QFQ), FISHTechniques used for routine analysis: Giemsa staining, GTG technique, and FISH in difficult cases
Sex chromosome aneuploidies and leukocyte chimerismReduced fertility or infertilityGiemsa staining, differential banding techniques (GTG, RBA, QFQ), FISHTechniques used for routine analysis: Giemsa staining, GTG technique, and FISH with heterosome probes or the array–CGH method in difficult cases
GTG: G-banding method using trypsin and Giemsa; QFQ: Q-banding methods using quinacrine; FISH: fluorescence in situ hybridization; RBA: R-banding method using Giemsa and acridine orange.

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Danielak-Czech, B.; Kozubska-Sobocińska, A.; Smołucha, G.; Babicz, M. Breeding and Economic Aspects of Cytogenetic Screening Studies of Pigs Qualified for Reproduction. Animals 2020, 10, 1200. https://doi.org/10.3390/ani10071200

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Danielak-Czech B, Kozubska-Sobocińska A, Smołucha G, Babicz M. Breeding and Economic Aspects of Cytogenetic Screening Studies of Pigs Qualified for Reproduction. Animals. 2020; 10(7):1200. https://doi.org/10.3390/ani10071200

Chicago/Turabian Style

Danielak-Czech, Barbara, Anna Kozubska-Sobocińska, Grzegorz Smołucha, and Marek Babicz. 2020. "Breeding and Economic Aspects of Cytogenetic Screening Studies of Pigs Qualified for Reproduction" Animals 10, no. 7: 1200. https://doi.org/10.3390/ani10071200

APA Style

Danielak-Czech, B., Kozubska-Sobocińska, A., Smołucha, G., & Babicz, M. (2020). Breeding and Economic Aspects of Cytogenetic Screening Studies of Pigs Qualified for Reproduction. Animals, 10(7), 1200. https://doi.org/10.3390/ani10071200

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