Detection of Giardia duodenalis Zoonotic Assemblages AI and BIV in Pet Prairie Dogs (Cynomys ludovicanus) in Bangkok, Thailand
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Origin of Samples and Screening of Giardia
2.2. Identification of Giardia Using Molecular Diagnosis
2.2.1. Genetic Characterization of Giardia
2.2.2. Detection of Giardia ssu rRNA Gene
2.2.3. Detection of G. duodenalis tpi Gene
2.2.4. Detection of G. duodenalis gdh Gene
Primer Name (Sequences) | Target Gene | Product Size | Reference |
---|---|---|---|
TPI-F3: 5′-AAATIATGCCTGCTCGTCG-3′ | tpi | 835 bp | [25] |
TPI-R3: 5′-CAAACCTTITCCGCAAACC-3 | |||
TPI-F4: 5′-CCCTTCATCGGIGGTAACTT-3′ | 530 bp | ||
TPI-R2: 5′-GTGGCCACCACICCCGTGCC-3′ | |||
RH1 1 5′-CATCCGGTCGATCCTGCC-3′ | ssu rRNA | 140 bp | [23] |
RH4 5′-AGTCGAACCCTGATTCTCCGCCAGG-3′ | |||
Giar-F 5′-GACGCTCTCCCCAAGGAC-3′ | 292 bp | [24] | |
Giar-R 5′-CTGCGTCACGCTGCTCG-3′ | |||
Gdh1 5′-TTCCGTRTYCAGTACAACTC-3′ | gdh | 754 bp 530 bp | [26] |
Gdh2 5′-ACCTCGTTCTGRGTGGCGCA-3′ | |||
Gdh3 5′-ATGACYGAGCTYCAGAGGCACGT-3′ | |||
Gdh4 5′-GTGGCGCARGGCATGATGCA-3′ |
2.3. DNA Sequencing and Bioinformatic Analysis
2.4. Statistical Analysis
3. Results
3.1. Occurrence of Giardia and Other Intestinal Parasites in Pet Prairie Dogs
3.2. Molecular and Genetic Characterization of Giardia in Pet Prairie Dogs
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Factor | Total Number | Positive Number | |||||
---|---|---|---|---|---|---|---|
Total Intestinal Parasites (%) | Giardia spp. (%) | Coccidia (%) | Nematodes (%) | Amoeba (%) | |||
Gender | Female | 44 | 14 (31.8%) | 3 (6.8%) | 5 (11.4%) | 1 (2.3%) | 1 (2.3%) |
Male | 35 | 11 (31.4%) | 8 (22.9%) * | 5 (14.3%) | 3 (8.6%) | 1 (2.9%) | |
Age | <6 months | 39 | 14 (35.9%) | 5 (12.8%) | 9 (23.1%) | 4 (10.3%) | 1 (2.6%) |
>6 months | 40 | 8 (20.0%) | 6 (20.0%) | 1 (2.5%) | 0 (0.0%) | 1 (2.6%) | |
Total | 79 | 25 (31.6%) | 11 (13.9%) | 10 (12.7%) | 4 (5.1%) | 2 (2.5%) |
Gene Targets | Prairie Dog 1 (Isolate: PS61-623) | ||
---|---|---|---|
Identified Species (Assemblage, Sub-Genotype) | Similarity (%) | Submitted to GenBank with Accession No. | |
ssu rRNA | G. duodenalis (NA) | 100% | ON025978 |
tpi | G. duodenalis (assemblage B, BIV) | 98.77% | ON037509 |
gdh | G. duodenalis (assemblage B, BIV) | 99.20% | ON037511 |
Gene Targets | Prairie Dog 2 (Isolate: PS61-629) | ||
ssu rRNA | G. duodenalis (NA) | 99.21% | ON025979 |
tpi | G. duodenalis (assemblage A, AI) | 100% | ON037510 |
gdh | G. duodenalis (assemblage A, AI) | 100% | ON037512 |
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Kamyingkird, K.; Phoosangwalthong, P.; Klinkaew, N.; Leelanupat, A.; Kengradomkij, C.; Chimnoi, W.; Rungnirundorn, T.; Nimsuphan, B.; Inpankaew, T. Detection of Giardia duodenalis Zoonotic Assemblages AI and BIV in Pet Prairie Dogs (Cynomys ludovicanus) in Bangkok, Thailand. Animals 2022, 12, 1949. https://doi.org/10.3390/ani12151949
Kamyingkird K, Phoosangwalthong P, Klinkaew N, Leelanupat A, Kengradomkij C, Chimnoi W, Rungnirundorn T, Nimsuphan B, Inpankaew T. Detection of Giardia duodenalis Zoonotic Assemblages AI and BIV in Pet Prairie Dogs (Cynomys ludovicanus) in Bangkok, Thailand. Animals. 2022; 12(15):1949. https://doi.org/10.3390/ani12151949
Chicago/Turabian StyleKamyingkird, Ketsarin, Pornkamol Phoosangwalthong, Nutsuda Klinkaew, Alisara Leelanupat, Chanya Kengradomkij, Wissanuwat Chimnoi, Teerapat Rungnirundorn, Burin Nimsuphan, and Tawin Inpankaew. 2022. "Detection of Giardia duodenalis Zoonotic Assemblages AI and BIV in Pet Prairie Dogs (Cynomys ludovicanus) in Bangkok, Thailand" Animals 12, no. 15: 1949. https://doi.org/10.3390/ani12151949
APA StyleKamyingkird, K., Phoosangwalthong, P., Klinkaew, N., Leelanupat, A., Kengradomkij, C., Chimnoi, W., Rungnirundorn, T., Nimsuphan, B., & Inpankaew, T. (2022). Detection of Giardia duodenalis Zoonotic Assemblages AI and BIV in Pet Prairie Dogs (Cynomys ludovicanus) in Bangkok, Thailand. Animals, 12(15), 1949. https://doi.org/10.3390/ani12151949