The 3Rs in Experimental Liver Disease
Abstract
:Simple Summary
Abstract
1. Introduction
2. The 3RS from an Institutional Point of View
3. Animal Models in Liver Disease
4. 3RS in Experimental Models of Liver Disease
4.1. Replacement
4.1.1. 2D In Vitro Liver Models: Monocultures and Cocultures
4.1.2. 3D In Vitro Liver Models
- Cell Stacking: The most conceptually simple strategy for three-dimensional cell engineering uses monolayer cultured cells in the “height” dimension. Cell sheet stacking undertakes this approach by using temperature-responsive culture dishes coated with polymers (poly(N-isopropylacrylamide) (PNIPAAm)) that change their hydrophilicity, hence the adherence of the cells, depending on the temperature. This allows the cells to be harvested when the hydrophilic conditions are met (20 °C) without any damage to membrane proteins. The preservation of intercellular interaction allows the stacking of several cell sheets and the reproduction of a more complex 3D structure [57,58]. In hepatic research, the combination of both parenchymal and non-parenchymal liver cell sheets has emulated some liver functions, such as albumin and urea synthesis. However, the absence of oxygen supply to the inner zone of the 3D-engineered tissue due to the lack of vascularization conditions limits cell viability to a short period of time that ends in an ischemic event [59,60].
- Spheroids as a 3D in vitro hepatic system: Spheroids are cellular clusters that can include one or more cell types and that typically acquire a spheroidal structure in the presence or absence of a matrix, recapitulating the hepatic in vivo 3D environment, being the 3D spheroid system applied to hepatocyte culture one of the first models of this technique developed [61]. Hepatocyte spheroids promote intercellular and ECM–cell interactions, the development of metabolites, gas, and nutrient gradients across the spheric-like structure and have been demonstrated to imitate and maintain liver-specific functions [62]. This approach has probed its utility in the study of drug pharmacokinetics and toxicity tests, making feasible its application for the determination of an appropriate drug dose [63].Current hepatic 3D spheroid-assembling methods have evolved [64,65], giving rise to a wide variety of protocols, being some of the most used the micromolds of non-adherent materials [66], rotation of cultured cells on 96-well non-adherent plates [61], stirred bioreactors [67], and methods that depend on gravitational aggregation of cells using hanging drop cultures. The availability of commercial solutions for hanging drop culture systems (ED Biomatrix. Ann Arbor, MI, USA; InSphero. Schlieren, Switzerland) has eased an initial standardization strategy for the technique [68].A variable that clearly limits the standardization of spheroids includes their non-homogeneous size, which directly influences experiments’ reproducibility [63]. Several technologies have investigated the generation of standard homogeneous spheroids in order to overcome this limitation by means of micromold-based spheroids [69], or by inoculating primary hepatocytes into pre-cultured 3D spheroidal nylon-scaffolds of non-parenchymal cells producing size-consistent particles with hepato-specific functions [70]. Even though there are some commercial solutions for spheroid assembly, their cost and difficulty make them unattractive for their implantation in most laboratories. On top of that, the clustering systems previously defined share several common limitations with monolayer cultures, such as the absence of a standardized culture scaffold stiffness and topography [71].
- 3D matrix/scaffold-based cultures: The use of 3D scaffolds for 3D culture of hepatic cell populations is a frequently used system just by itself or in combination with other technologies (such as its application in homogeneous spheroid generation explained in the previous section). Culture matrixes can be developed out of synthetic (scaffolds synthetic polymers [72]) or biological materials biological sources (naturally derived hydrogels: Alginates, celluloses, or polyethylene [73]). Synthetic materials are extremely flexible and can be easily fabricated, but their microarchitecture and biomechanical behavior, key properties for proper cell culture, are not adequate. The current strategy to overcome these limits is based on the development of 3D scaffolds from biological ECM-derived materials, such as basement membrane or type-I collagen. These ECM-derived gels are characterized by the preservation of cell–ECM interactions. Despite that, these biomaterials also have several limitations, mainly the heterogeneity of mechanical properties between different batches of gels and the incapacity of resembling physiological liver 3D microarchitecture [74]. In those conditions, cultured cells encapsulate randomly in ECM-derived gel scaffolds, randomly self-organizing into not natural liver microstructures and also not reproducing and/or maintaining specific liver functions over time due to the absence of tissue-specificity of these biomaterials [44].
- 3D bioprinting of liver tissue: 3D bioprinting includes a group of techniques for the fabrication of three-dimensional, cell-packed, liver-like structures with a determined geometry by the manipulation of a combination of biological materials, biochemicals, and living cells, usually called “bioinks” [74]. Based on their handling, the most common printing technologies can be classified into three different categories: Droplet-based, photocuring, and extrusion-based bioprinting [45,74].
- Droplet-based bioprinting also known as inkjet-based bioprinting, was the first 3D bioprinting technique developed. Originally proposed by adapting a common inkjet printer to work with bioink-loaded cartridges, current droplet-based bioprinters use an actuator to deposit droplets of biomaterial onto a substrate to generate a 3D structure [75]. In addition to their simplicity and commercial availability, droplet-based bioprinters still remain the first choice for applications that require the printing of a high accuracy pattern, being able to even generate single-cell droplets of bioink, thus building constructs with a similar resolution to cellular dimension [76]. However, their popularity is being progressively reduced due to the overstress that is generated in the cells by the thermal and piezoelectric actuators that form the printer [77].
- Photocuring bioprinting: Currently known as laser-based bioprinting due to the implementation of this lighting technology to treat photo cross-linkable bioinks, this approach can generate highly accurate 3D structures with a resolution of up to 50 µm [45]. Laser-based bioprinting is especially recommended for high-fidelity applications at low resolutions (i.e., vascular network ultrastructure printing [78]). Photocuring bioprinters can effectively mimic the lobular vascular network from a technical, structural point of view. However, the use of this technology strongly limits the variety of bioinks available due to the necessity of photo-crosslinking properties or the use of functionalizing reagents [78]. In combination with their low throughput, the cell-unfriendliness of the method, and the absence of commercially available systems, laser-based bioprinting is not a standardized 3D modeling method yet [45].
- Extrusion-based bioprinting: It is based on the extrusion and deposition of a bioink filament on the printing surface [77]. Depending on the mechanical approach by which the biomaterial is extruded, three different subcategories are identified: Pneumatic extrusion (the most widespread, controls the flow of ink and pressure through an air compressor), extrusion with a syringe pump (controls precisely the extruded volume of bioink), and screw extrusion (the least popular due to the enormous stress that screw rotation places on the cells) [74]. Extrusion-based bioprinting is currently the most popular technology for liver tissues. The main reason is that it overcomes the cellular stress and damage generated by droplet-based approaches [77].As stated before, there is a wide variety of bioprinting technologies, with their respective market approach, features, price, and technology. Conversely, the design, standardization and optimization of tissue-specific bioinks is still a challenging task in this field [79]. The materials used for bioprinting need to be cell-and printing-process compatible and provide the mechanical and functional properties that mimic liver tissue, thus allowing maintenance of hepato-specific cell behavior in long-term cultures [46]. Private companies have developed some commercially available solutions for bioprinting materials, such as Insphero®®, whose extrusion-based 3D spheroids of hepatocytes, HSCs, and Kupffer cells were printed in liver ECM-hydrogels. Another example is the Novogel 2.0 from Organovo®®, which has been used to extrusion-bioprint HSCs/HUVEC cocultures allowing long-term maintenance of cells [45]. Nevertheless, the use of proprietary printing techniques dramatically increases costs, and the need for a complicated experimental setup restricts its accessibility to the research community.
- Decellularized Liver scaffolds: Decellularization of liver scaffolds is an elegant strategy to overcome the macro- and microstructure-related issues derived from previously mentioned 3D culture techniques, where liver microanatomy could not be fully reproduced. Decellularized liver scaffold aims to provide a 3D structure that has the optimal conditions for hepatic cell culture survival and proliferation while preserving the intrinsic organ vascular network [80]. This approach is based on eliminating parenchymal and non-parenchymal populations of the liver by perfusing the organ with decellularizing solutions (i.e., detergents, delipidating enzymes, and nucleic acid-degrading enzymes) while preserving three-dimensional ECM structure [45]. Decellularized livers can then be used as 3D ECM bio-scaffolds for recellularization and tissue engineering [44]. A key advantage of decellularization-recellularization protocols lies in the preservation of liver-specific ECM macro- and microstructure and crucial bioactive molecules for ECM-cell interactions, thus assuring the necessary stimuli for hepatic cells engraftment, survival, and physiological behavior, consequently allowing to overcome other 3D platforms’ limitations [80].Some drawbacks of these culture models include the fact that decellularizating perfusion protocols must be tissue-, disease-, and species-specific, mainly due to the significant variations of cell populations abundance and proportions and ECM protein composition that characterize healthy and diseased liver and could affect the recapitulation of 3D environment during cell elimination [81]. Another limitation of the strategy is the limited availability of human liver tissue for the optimization of the model (and the technical complication of human liver perfusion, forcing researchers to adopt alternative tissue in vitro incubation methods). Hence, most liver decellularization studies have been performed in rats, even though successful decellularizations have been reported of whole sheep and pig livers [80].
- Precision cut liver slices (PCLSs): PCLSs are a versatile, ex vivo model that maintains complete liver architecture and populations (including infiltrating immune cells), therefore, avoiding the limitations of previous models when it comes to macro- and microarchitecture mimicking, as it is a genuine slice of tissue [82]. Among their main benefits, their reproducibility, low cost, and high overall cell viability should be highlighted, allowing researchers to perform experiments in cultured PCLSs for 5–7 days (although this relatively short time could be considered a drawback of the system) [82]. In addition, the combination of PCLSs with microfluidic devices has boosted the in vitro evaluation of multi-organ interaction and culture technology [45].Nevertheless, access to fresh human liver tissue (the most valuable for research) is one of the pivotal limitations of PCLS: The scarcity of healthy human liver biopsies in combination with the coordination between surgeons, clinician teams, and researchers strongly limits its use [82]. Another drawback is the lack of biopsies on healthy tissue, forcing researchers to work with distal portions of the diseased liver that are not actually healthy. The same situation happens with diseased tissue, as research usually needs a clearly defined background to proceed and identify interesting outcomes. However, harmed liver biopsies are extracted from patients undergoing different treatments/therapies and might have a combined diseased background with metabolic, alcohol/drug intake, cancer, or genetic components [83]. Bearing that in mind, the main alternative for liver slice obtention are animal organs, which, unfortunately, have shown different proteomic profiles and outcomes, depending on the species [44]. Lastly, a clear disadvantage of PCLSs independently of human or animal sources is that slice preparation inevitably generates two cut-injured surfaces that undergo regeneration processes that result in HSCs activation [45].
- Liver-on-chip: As stated before, liver cells in vivo are put under constant and diverse stimuli. Organs-on-Chip, specifically Liver-on-Chip, are microfluidic devices that in vitro recapitulate the physiological properties of tissue microenvironment. Liver-on-Chip specifically considers fluid flows and 3D architecture of the hepatic sinusoid, allowing for 3D cell culture with a greater degree of in vivo-like environmental cues, highlighting fluidic shear stress as one of the key features of healthy and diseased liver 3D culture [84,85]. Liver-on-Chip devices can be classified in the following categories: Gravity-driven perfusion platforms, Pump-driven perfusion platforms, and 3D mass culture systems [85].
- Gravity-driven perfusion platforms: They are the simplest version of these microfluidic devices, but also the ones that less resemble physiological conditions, relying on gravity to perfuse cultured cells. This approach eliminates the necessity of tubing, pump components, and power supply dependence, hence, flow rate, nutrient supply, and shear stress are not constant over time [86]. In this device, the tilting of the chip forces culture media to flow from one reservoir to another through microfluidic channels where liver cells are cocultured. The fluidic conductions are engineered so that the cells experience a unidirectional flow of media (by returning media with different connections to the original reservoir). Despite some new designs that try to avoid flow-related issues (bi-directional, recirculating organ-on-chip), the ease of use and resilience against bubbles make simple, gravity-pumped organs-on-chip a valuable and affordable option [86,87].
- Pump-driven perfusion platforms: They constitute a higher level of physiological similarity than the previous ones, in which peristaltic/syringe pumps deliver a high enough, consistent flow rate, thus assuring a better grade of nutrient supply and shear stress [88]. These systems allow researchers to design far more complex chips to study specific biological aspects of cells in culture, even combining 2D perfusion systems with a gradient generator to imitate the metabolic zonation of the liver [89] or the development of membrane-based, pump-driven devices for the coculture of primary human hepatocytes with hepatic non-parenchymal cells, successfully resembling albumin and urea secretion in comparison with classic culture techniques [90].
- 3D mass culture systems: Designed to promote cell proliferation and aggregation into three-dimensional, self- or engineered-organized structures (following similar principles as those explained in the spheroids section of this paper) while putting cells under the flow conditions previously described. One of the best examples in liver disease is the device developed by Lee et al. [91]: A mimetic sinusoid-like structure formed by a wide inner channel for cell culture and an outer channel for culture medium flow. The microfluidic arrangement is connected by perpendicular channels that allow a continuously perfused 3D culture with limited shear stress that highly imitates the physical distribution of sinusoidal endothelium and even LSECs fenestrae.Unfortunately, the cost and complexity of these microfluidic systems, in combination with the absence of popular, commercial options, clearly limit the applicability of the technology for investigation. The vast majority of liver-on-chip and microfluidic organ-on-chip devices are developed by the research groups themselves, compromising their reproducibility [46]. In addition, the complex and diverse etiology of most liver diseases, in which not only the liver, but many other players, such as adipose tissue and gut, take part, bring the necessity of studying the interactions between multiple organs in these already complex devices. Even though multi-organ systems and body-on-chip approaches are starting to be a reality, these highly complicated microfluidic culture strategies are still more a field under research rather than a real, affordable, and accessible alternative to non-specialized research teams [92].
- Organoids: Organoids, as defined by Lancaster and Knoblich in 2014 [93] and Huch and Koo in 2015 [94], are an “in vitro 3D cellular cluster derived from tissue-resident stem/progenitor cells, embryonic stem cells, or induced pluripotential stem cells capable of self-renewal and self-organization that recapitulate the functionality of the tissue of origin.” From this general definition, liver organoids arise as three-dimensional culture systems developed by embedding hepatic stem, progenitor, or tissue resident cells in hydrogel matrixes that resemble ECM properties [46]. The beginning of organoid culture starts with the isolation of the aforementioned stem/progenitor/pluripotent cells from embryonic or adult tissues, which then are cultured and stimulated in media with growth factors and support matrixes that imitate endogenous, physiological signals that give rise to liver tissue during embryonic patterning [95]. Organoids completely outplay 2D and even some 3D culture models (Table 1) when it comes to (patho)physiological modeling, cell differentiation, interaction, and migration. In addition, their high genomic stability and easy culture expansion make them a highly suitable model for long-term storage and high-throughput compound screening [96].Even though many researchers have defined specific protocols and schemes for organoid generation, this technology is still extremely proprietary. The long, time-consuming protocols and particular growth factors, stimulant agents, and molecule cocktails required for each step of organoid generation keep this 3D culture method as a not widespread option [97]. However, no matter the strategy followed, the process of liver organoid formation (which obviously mimics physiological liver organogenesis) considers three key factors: Scaffolding/matrix material, signaling for cell differentiation, and starting cell types. Firstly, ECM stiffness, origin (biological or artificial), and composition have a great impact on the cell behavior and its metabolism, as previously commented. In organoid generation protocol, commercial Matrigel (a biological ECM extracted from Engelberth–Holm–Swarm (EHS) mouse sarcoma) is the most popular scaffolding material for liver organoids [98]. Although biological-source hydrogels better imitate the structure and microstructure of liver ECM while also being naturally embedded with a milieu of proteins, growth factors, cytokines, and signaling molecules that biologically prime organoids’ cells, their lack of a defined composition and consistency limit the reproducibility of assays and large-scale, commercial production [99]. Furthermore, the murine origin of matrigel restricts its applicability to clinical or human-based research processes.Secondly, cell signaling differentiation stimuli must be carefully implemented in culture media to prime liver development pathways and self-organization. Finally, the starting cell types play a pivotal role in the whole liver organoid formation process by directly influencing their evolution. Monoculture or coculture of different starting cells (primary/adult stem cells, embryonic stem cells, induced pluripotent stem cells, etc.) follow different differentiation paths, therefore requiring specific treatment [100]. Benefits notwithstanding, liver organoids remain an uncommon culture strategy for basic research groups. The time-consuming, low efficiency, and poor control of morphology and composition, in combination with the tendency to express immature fetal markers or differentiated cells, are obstacles that basic researchers have to overcome. The scarcity of primary liver tissue that conditions organoid development to immortalized or tumoral cell lines, a lack of exposure of liver organoids to gut microbiome, and the absence of optimized differentiation protocol on the industrial scale are the main issues that keep this technology as a promising but not yet applicable technology at mass, commercial production, or clinical applications [100,101].
4.1.3. Computational Models
Advantages | Disadvantages | Key References | |
---|---|---|---|
2D Mono-/cocultures | Easy, reproducible handling High throughput | Intercellular interactions Macro-, microenvironment Mechanical heterogeneity of liver Reductionist view of disease | [44] |
Cell stacking | 3D environment Preservation of intercellular proteins | Short incubation time Absence of oxygen supply Ischemic events in long-term cultures | [59,60] |
Spheroids | Intercellular and ECM interactions Metabolites, gas and nutrient gradients across spheroid | Non-standardized size Difficult reproducibility of experiments Elevated price | [61,62,63] |
3D scaffold-based cultures | Allows better spheroid standardization ECM-cell interactions | Heterogeneous mechanical properties between scaffold batches Possibility of random, non-liver organizations of cells | [72,74] |
3D Bioprinting | High versatility thanks to multiple bioprinting techniques | High cost of proprietary reactives Lack of ECM interactions | [45,75,78] |
Decellularized liver scaffolds | Maintenance of liver macro- and microstructure ECM interactions Preservation of organ vascular network | Highly specific decellularization protocols with difficult reproducibility Limited source of human liver tissue | [75,80,81] |
Precision cut liver slices | Complete maintenance of liver architecture and cell populations High reproducibility Low cost Combination with other technologies (e.g., liver-on-chip) | Scarring process at cut-injured surfaces Short culture time Limited source of human liver tissue Lack of healthy liver samples Precise coordination between clinicians and researchers required | [82] |
Liver-on-chip | Good recapitulation of physiological conditions Shear stress, nutrients supply and waste clearance Metabolic zonation emulation | High cost of technology Absence of commercial/popular solutions Limited reproducibility Restricted diffusion due to complex experimental design and infrastructure | [85,86,87,88,89,90,91] |
Organoids | Excellent (patho)physiological modelling Good cell differentiation, interaction and migration Culture expansion and high genomic stability | Non-standardized generation protocols Long, time consuming engineering process Highly complex experimental design and infrastructure Matrix-related limitations (murine Matrigel, batch effect, etc.) | [46,96,97,100,101] |
Computational models | Exceptionally high throughput Technology under constant improvement Positive benefit/cost ratio Excellent coupling with further validations | Limited to existent physiological/expert knowledge Requires in vitro/in vivo experiments for validation Heavy dependence on training data quality | [102,104,106,111] |
4.2. Refinement
4.2.1. Animal Husbandry and Monitoring
4.2.2. Refinement in Liver Research
- Surgery models: In the BDL model, the surgical model of chronic liver disease, it is needless to say how critical the role of the surgeon is in order to avoid unnecessary damage and the consequent pain during the procedure. Until the second half of the XX century, for instance, severe infections or bleeding were common in animals subjected to this model [164,165]. This was likely caused by the challenges intrinsic to rodent surgery. In contrast to bigger species where there is a dedicated surgical space and the surgeon is usually assisted, rodent surgery is routinely performed alone and outside a sterile environment. Thus, the responsible for performing the surgery must induce, maintain, and recover the animal from anesthesia while ensuring crucial aseptic conditions, especially when operating the abdominal cavity [166,167]. Unfortunately, this rather common setup is still far from the standards for bigger species, indicating an important room for the refinement of surgical procedures in rodents. Luckily, microsurgery has advanced at a rapid pace during the last two decades, optimizing the protocols for BDL in terms of a reduction of vascular structures and bile duct manipulation, improvements in aseptic techniques, and optimization of the postoperative mice, which resulted in an overall reduction of tissue damage [168]. Earlier studies also implemented the use of prophylactic antibiotics to reduce the risk of infection and early mortality [168]. Nevertheless, with the increasing importance of intestinal microbiota in the gut-liver axis [169] and the aforementioned spontaneous infections during cirrhosis progression [122], the application of antibiotics has been limited to highly specific circumstances. Remarkably, nowadays, BDL is considered as a low-complication, highly reproducible model for cholestatic disease in mice, albeit it is skill-intensive [167]. Additional refinements have been made in the model of partial BDL, in which only certain lobes are affected by the cholestasis, implying that the unaffected lobes can be used as internal controls while also reducing systemic distress [170]. Despite these innovations, pain is an integral part of the BDL model. Not only the laparotomy but especially the biliary pressure and the inflammation caused by the ligation of the duct, are a source of significant chronic pain and distress [171]. This pain is usually associated with notable levels of morbidity and mortality [30,172] and is considered traditionally neglected as well [173]. In that sense, local lidocaine-based anesthesia, either topically or injected in combination with bupivacaine, could provide multimodal analgesia at the incision site during laparotomy [174] when used along inhaled anesthetics such as isoflurane [160,172]. Alternatively, the ketamine-xylazine cocktail can be used as IP anesthetic, although tailoring the dose is necessary when applied to mice with chronic liver disease [160,175]. If this cocktail is used, preventive butorphanol or metamizole have been explored as a pain-anticipation strategy, showing positive results in the control with analgesia perioperatively [176]. In order to address further postoperative pain, buprenorphine has been the systemic analgesic of choice since the inception of the BDL model, albeit its insufficient use [173,177]. Interestingly, the multimodal combination of buprenorphine and carprofen outperformed buprenorphine alone controlling pain in postoperative mice [163], which could represent a refined analgesic protocol in BDL. Finally, when external pain mitigation is not enough to alleviate discomfort in this model, given its aggressiveness, early humane endpoints have been suggested to reduce excessive suffering in these mice [178].
- Substance Administration: Regarding the CCL4-induced chronic liver disease model, it is considered less severe than the BDL model [171] but not exempt from distress nor mortality [144,179]. Notably, depending on the route of administration of the toxin, the progression of liver damage can be more aggressive, leading to key differences between experimental designs, in turn, leaving room for optimization and refinement [141]. Intraperitoneal administration is the most common treatment route for CCL4 [180] (also for dimethylnitrosamine [13] or dioxin [14]), which, unlike thioacetamide [12], cannot be administered in drinking water due to their chemical and safety attributes [29]. This administration, spanning from 6 to 12 weeks depending on the protocol, renders a reproducible fibrosis that does not fully progress into cirrhosis in most cases [141]. Additionally, the process requires an experienced handler although the injection is considered technically simpler than other methods, in order to avoid organ puncture, bleeding, and infections [142]. Conversely, when advanced stages of the disease are needed, oral gavage CCL4 represents a viable alternative [181] despite being considered to induce greater rates of mortality [29].While earlier studies showed molecules, such as isothiocyanate or dihydrocollidine, to be safer when inducing cirrhosis orally [180], recent ones demonstrate that refined dosing protocols, in conjunction with careful handling during gavage, not only reduced mortality rates but also led to a full development of cirrhosis with portal hypertension which is difficult to replicate in rodents [182]. Remarkably, this latter study suggests that misplaced installation of CCL4 might be responsible for most of the deaths during the protocol, which, in turn, implies that further improvements during oral gavage would benefit the model [182]. Indeed, this route of administration is deemed technically challenging. Besides aspiration, gastrointestinal tract irritation, or even rupture in the worst scenarios, are some of the adverse effects associated with oral gavage [142]. In addition to learning a proper technique, utilizing softer intragastric probes would reduce gastrointestinal irritation [183]. When dealing with struggling individuals, habituation to the process might reduce resistance and stress. As a matter of fact, it has been shown that handling and restraint could be sufficient as an acclimatization protocol replacing the sham gavage treatment [184]. Further strategies to reduce discomfort during the intragastrical administration include the coating of the probes with sweet solutions when the model allows it [185] or, in extreme cases, the use of mild inhaled anesthesia for sensitive or aggressive animals [186].
- Imaging techniques: As mentioned, one of the outcomes of both, the BDL and CCl4 model, is the induction of a fibrotic process [3]. As such, the evaluation of fibrous deposition in the mouse liver plays a central role in these protocols. In order to assess the effect of genetic models or drugs on fibrogenesis, for instance, the liver is usually studied post-mortem with different molecular and histological techniques. Consequently, if the research is aimed at understanding a dynamic process, several time points along the protocol are usually scheduled with their corresponding higher number of mice enrolled [187]. Attempts to implement liver biopsy in mice, the gold standard in humans, have been made, striving for a reduction of the animals used in these cases [188]. Still, the concerns about its safety in rodents and its welfare implications make non-invasive approaches more suitable for following fibrosis progression [189]. Computed tomography [190] and magnetic resonance imaging [191] have been used to study liver processes, such as regeneration or metastasis growth. Nevertheless, the complex machinery required for these methodologies has prevented the spread of its use. Ultrasound-based approaches, on the other hand, are considered simpler, low-cost, and efficient, being widely used in human cirrhosis diagnosis [189]. In particular, transient elastography has been recognized as a potent tool to assess liver stiffness, which is proportional to the grade of fibrosis [192]. In fact, recent advances in the methodology have dealt with the technical difficulties related to the size of the mice, facilitating further longitudinal studies and promoting refinement and reduction in liver fibrosis research [193].
- Blood collection: Another excellent refined system to follow degenerative diseases of the liver is through the use of biomarkers present in blood and other biological fluids [194,195]. Traditional evaluation of liver function is based on the serum levels of hepatic enzymes, such as alanine aminotransferase (ALT), aspartate aminotransferase (AST), or alkaline phosphatase (ALP), as readout of hepatocyte damage. Nevertheless, additional proteins are gaining importance as prognostic markers of survival like Albumin or Liver-type fatty acid binding protein [196]. Moreover, MicroRNAs have been shown to be reliable markers of disease progression, especially miR-122, which not only is liver-specific but also strongly correlates with necroinflammatory activity in the liver and fibrosis progression [197]. Recent strategies based on omic technologies have also contributed to the identification of novel molecular markers fined-tuned to specific liver injury models [198,199], such as Keratin-18 or Glutamate dehydrogenase, ultimately increasing the set of tools available to follow disease progression. This increasing pool of markers is thought to have better sensitivity and specificity compared with the classical ALT and AST, giving rise to the use of combinatory panels of makers, which helps to accurately detect and predict risk during liver disease progression in a less invasive and humane manner [194,200].When it comes to collecting the blood from which most of liver-relevant biomarkers are assessed, there are also key differences to keep in mind between the existing approaches. In terms of animal welfare and experimental outcomes, not only the collection technique alters the values of crucial parameters, such as ALT and AST [201], but as they require more manipulation or are more invasive, they also induce greater levels of distress in the animals. Although intracardiac puncture or collection from the vena cava render higher volumes of blood, these are usually employed secondary to other interventions, such as organ harvesting, hence refinement is only applicable to suffering prevention during the procedure through a proper anesthesia and analgesia. On the contrary, with the advances in bioanalytical techniques, novel systems that require as little as 10–50 µL to function have emerged, promoting the development of microsampling techniques and favoring the implementation of longitudinal studies [202]. There is increasing evidence that microsampling techniques provide similar results to traditional approaches [203,204]. As such, they have been employed to perform several extractions from the same mouse, enabling the study of dynamic processes, like pharmacokinetics or toxicokinetics, from fewer mice, fostering reduction along refinement [204,205]. Regarding the welfare of this approach, it is true that taking several samples from one animal could be distressing, nevertheless, skilled handlers with the appropriate route of collection would maintain stress at a minimum [203,205]. For instance, facial vein puncture or sublingual puncture produce lower levels of stress when compared to other techniques like retrobulbar sinus puncture [206,207]. The latter is so aggressive that it requires the use anesthesia, its use is proposed as terminal, and even its use is discouraged in some countries [208]. Other routes that have been shown to induce acceptable levels of distress when applied to serial sampling are the lateral tail vein [205] and the saphenous vein [204]. Although there is still research to be done given the novelty of this field, the use of serial microsampling has a promising niche in the study of DILI [209].
- Genetic models: Finally, in the intersection between reduction and refinement, we can find the use of genetically modified animals as potential tools to refine liver studies ranging from drug metabolism to liver fibrosis, among other pathologies [18,210]. These models, most commonly generated in mice, allow researchers to mimic and study human liver diseases without the need for complex surgeries or special diets in many of the cases, thereby reducing manipulation and the consequent additional distress in the experimental animal. For example, in the BALB/c.Mdr2−/− model, mice lack a canicular phospholipid transporter leading to an imbalance of phosphatidylcholine transport to the bile, which causes sclerosing cholangitis and liver injury. These animals develop a spontaneous progressive chronic biliary liver disease [187] that has been used to study biliary fibrosis progression without the need to generate the traditional BDL model through surgery [211]. Other interesting examples can be found for liver fibrosis or NAFLD elsewhere [212,213]. Even though these models have been proven useful as a result of similarities found between human and murine genetics and physiology, it is crucial to acknowledge that the remaining differences still constitute a burden in translational research (Figure 1). In particular, this aspect has affected drug development the most, having over 90% of the molecules that showed positive results after preclinical studies discarded in later stages of the clinical trials because of different levels of toxicity [214]. Remarkably, differences at the level of liver metabolism are at the core of the majority of these incompatibilities (Figure 1). About 50% of the molecules that caused DILI in humans showed no toxicity in the animal models [215]. To tackle this phenomenon, genetically humanized mice, which express human xenobiotic receptors, drug-metabolizing enzymes, and transporters, were first developed with positive albeit limited results [216]. Consequently, in order to mimic better the physiology and microenvironment of the human organ, mice with a chimeric liver, in which the hepatocytes have been replaced by human ones, were established to replace drug metabolisms accurately in vivo [214,216]. Interestingly, these humanized models have been successfully used for the evaluation of novel therapies, substituting more complex organisms like primates [217], or for the study of human liver viral infections [218]. Although the benefits of these models are unparalleled, there are several caveats still to address. The repopulation of the liver by the human hepatocytes is not perfect (>85%), which needs to be considered in the pharmacokinetic studies. Additionally, for the human hepatocytes to survive in the mice, different levels of immunodeficiency, depending on the specific model, must be generated to avoid rejection [18,214]. The implications of this lack of a complete immune response in humanized mice are also to be accounted for when modeling human liver pathologies since innate and adaptive immunity are involved in most of them [18]. Regardless of this pitfall, which could potentially be circumvented with the infusion of human immune cells as well [219], several attempts with promising results have been made to model chronic liver diseases, such as NAFLD [220] or liver fibrosis [221]. Whilst this is an incipient field, and the numerous variables and components of humanized mice make them extremely complex, they are a powerful tool for biomedical research, contributing to the refinement of the models by mimicking human disease better, while contributing to reduction by limiting the number of non-humanized mice used in preclinical studies.
4.3. Reduction
- The experimental design: These days, experts in animal research claim for the necessity of including a new 6Rs approach (including robustness, registration, and reporting) since the majority of scientists are mostly concerned merely with animal welfare when the 3Rs principles are applied [226]. In this sense, the UK National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs) has recently created the new NC3Rs Experimental Design Assistant (EDA) that promotes the new 3Rs principles for scientific value, facilitating both the advancement of robust study protocols and enabling the inclusion of timestamps in the resultant protocols, gaining reproducibility and reducing variance [226]. Consequently, during the preliminary experimental phase, scientists should receive counsel from bio-statistical experts for the purpose of methodological scheduling the experimental design since it is of utmost importance and will define the research outcomes [25,222,224]. It is well-reported that during the nineties, over 60 percent of the published papers exhibited statistical errors and this fact led to an increased number of animals required for answering the scientific hypotheses [224]. Some of the solutions given by animal researchers were not only doing comprehensive research in the literature on the matter but also an improvement of scientists’ training regarding high technological statistics and avoiding duplicate tests sharing positive as negative results with the scientific community [222,224].As for the experimental design, the key elements to consider are: The hypothesis, objectives, types of variables (quantitative or qualitative), controls needed (positive or negative), the nature of the study (exploratory or confirmatory), the effect size of a given treatment, types of errors, the levels of bearable errors, and the statistical tests, among others [223]. Moreover, during experiment execution, blinding and randomization are two more crucial factors to bear in mind [223]. Regarding blinding, since in some instances it is inevitable, some measures, in particular using anonymous codes for identification and changing independent personnel for treatment administration, are suggested so as to reduce researchers’ prejudices about an experimental condition [223]. As for randomization, randomized block experimental designs have risen in importance as an alternative to completely randomized designs since they are considered more powerful and convenient and, in comparison, a reduced animal number is required. These designs are focused on reducing systematic errors by creating separated blocks composed of an experimental unit for a given treatment, in which an animal cage, not a single animal, is exposed to a drug combination, dosage, etc., in order to find a treatment effect [223,227]. This concept includes possible different variables between the EU that can affect the statistical outcomes because of possible independent-treatment effects from matched ages and weight, up to refinement conditions, such as the cage position on the rack and stress and treatment duration of each block [223,227].Taking all of these delimited variables into consideration, in addition, using a proper estimator of the sample size per group of individuals results in powerful statistical evidence with a sufficient number of animals [223]. In order to attain the estimated size of the number of animals, certain resources serve as supportive assistance, including the online assistance organization, the NC3Rs EDA’s website, and the widely utilized Gpower 3.1 software of Düsseldorf’s University.
- Data quality in the study design: Contemporary approaches to reduction focus on experimental design mostly for creating reproducible and quality data with fewer animals. Considerable apprehension has been raised in recent years regarding reproducibility, as evidenced by reviews, which was able to corroborate results in merely six out of fifty-three preclinical cancer trials [222,228] (Rt. Some of the reasons were included inappropriate cell lines and mouse models [222]. To a lesser extent, some experts have already considered that microbiota by itself can represent a source of variation in terms of immunological response in rodent models, and although, unfortunately, it is inevitable, it is suggested to be considered both in the first steps of the experimental design and analyzing the results in comparison with standardized studies in different laboratories on the same model [229,230].Another aspect to take into account in the reduction in animal experimentation is the sex as a biological variable (SABV). It is undeniable that for over a century, males have been preferred as experimental animals due to the possible effects of female hormones, and this fact could have potentially introduced bias and compromised the representativeness of the obtained results [231]. This approach can affect the sample size and the reduction principle in different aspects. Firstly, it has been discussed that when sex does not have a clear impact on the treatment, only a small number of additional animals are needed in order to have an adequate number of males and females per treatment. By contrast, the possible interactions of sex with treatment’s outcomes exponentially increase the required sample size [231]. In pilot and exploratory studies, the use of a single sex is generally accepted because of a reduction of the sample size since their main purpose is to discover potential effects and not the sex impact. However, large cohort studies could have resulted in a waste of animals and other resources if treatment effects are sex-dependent [231]. In this sense, according to the hypothesis and mouse model, governing authorities should enforce absolute transparency in relation to the inclusion and exclusion of animals, particularly concerning the selection of animal gender [231]. Secondly, the use of a single sex entails a misuse of female littermates in the breeding. In this sense, there exists an evident issue of notable concern in breeding facilities, which often exhibit animals in stock generating a surplus that surpasses ten percent of the overall bred population, and this can be addressed by facilitating information on that stock in repositories aiming to achieve a more optimal balance in the production and consumption of experimental animals [222].Further aspects to be mindful of are the training and educational level, which are mandatory in the vast majority of European countries when it comes to animal experimentation. Outcomes’ variability can be disrupted when accredited but non-experienced researchers perform experiments with animals, creating stress to animals regarding refinement conditions such as handling [222]. Furthermore, pharmaceutical companies incorporate the Good Laboratory Practice (GLP) and Good Manufacturing Practice (GMP), which both contribute to reduction by limiting the occurrence of dubious results and the necessity for re-testing, as high-quality and dependable data are employed, with clearly defined protocols in standard operating procedures (SOPs) [222].
- Use of up-to-date techniques: In contemporary times, novel technologies, as independent approaches within experimental design, have surfaced and gained recognition within the scientific community, aligning with the objective of implementing the reduction principle. During the past two decades, select fields of biomedical research, such as studies from pharmacological companies focusing on toxicity assessments, production, and vaccine testing, were developed in order to decrease the used animal number [222]. Notably, in the context of toxicity testing, the implementation of standardized protocols based on reversed toxicology has facilitated the direct evaluation of chemical exposure levels, deviating from the conventional four-phase approach. Consequently, this paradigm shift has led to a diminished reliance on animal models. Another notable example pertains to the meticulous control of vaccine batch production, wherein emphasis is placed on biochemical and physicochemical tests instead of evaluating the final product. Noteworthy historical instances include the replacement of a considerable amount of animals with a unique egg yolk for polyclonal antibody production and the utilization of recombinant DNA in hormone production, particularly during quality assessment procedures [222].Additionally, due to the high social pressure on replacement of experimental animal models, the cosmetic industry has largely replaced their usage for in vitro techniques in mutagenicity, phototoxicity, and skin corrosion [232]. In vitro techniques related with the replacement are specified in the replacement section. Some of the most remarkable novelty techniques related to reduction are the use of longitudinal imaging and multi-omics technology, which boost the information collected per animal [193,233,234]. Another innovative method related with genetic expression is the well-known CRISPR-Cas9 system, which although not yet standardized in practice, could prevent the creation of undesired gender from breeding in the near future [234].
- Reduction principle in liver research: First and foremost, precisely selecting a liver damage model according to the scientific question is imperative for researchers in order to fulfill the appropriate study design and reduce the number of animals with utmost effort. Additionally, this choice must be thoroughly chosen alongside a plenitude of factors, such as rodent strain and gender since the abundant diversity regarding clinical and histopathological features of the disease is already acknowledged [29].Concerning liver injury models in rodents, over the years, as it has been described, the scientific community has specifically tailored different models in accordance with the stages of hepatic damage [11]. Nevertheless, although they are handy for disease study, some of these models, such as ALD models, cannot reproduce the features of human disease. What is more, NAFLD/NASH models tend to recreate the disease, but they are not equally reproducible and count with a high disparity between them (methionine- and choline-deficient diet, high fat diet, Western diet, etc., because of the heterogenous diet composition, mice strains and gender are usually reported [11] (Figure 1).
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Martinez-Lopez, S.; Angel-Gomis, E.; Sanchez-Ardid, E.; Pastor-Campos, A.; Picó, J.; Gomez-Hurtado, I. The 3Rs in Experimental Liver Disease. Animals 2023, 13, 2357. https://doi.org/10.3390/ani13142357
Martinez-Lopez S, Angel-Gomis E, Sanchez-Ardid E, Pastor-Campos A, Picó J, Gomez-Hurtado I. The 3Rs in Experimental Liver Disease. Animals. 2023; 13(14):2357. https://doi.org/10.3390/ani13142357
Chicago/Turabian StyleMartinez-Lopez, Sebastian, Enrique Angel-Gomis, Elisabet Sanchez-Ardid, Alberto Pastor-Campos, Joanna Picó, and Isabel Gomez-Hurtado. 2023. "The 3Rs in Experimental Liver Disease" Animals 13, no. 14: 2357. https://doi.org/10.3390/ani13142357
APA StyleMartinez-Lopez, S., Angel-Gomis, E., Sanchez-Ardid, E., Pastor-Campos, A., Picó, J., & Gomez-Hurtado, I. (2023). The 3Rs in Experimental Liver Disease. Animals, 13(14), 2357. https://doi.org/10.3390/ani13142357