Classification Performance of Thresholding Methods in the Mahalanobis–Taguchi System
Abstract
:1. Introduction
2. The Concept of Mahalanobis Distance (MD)
2.1. Mahalanobis Distance (MD) Formulation
- ●
- k = the total number of features;
- ●
- i = the number of features (i = 1, 2, …, k);
- ●
- j = the number of samples (j = 1, 2, …, n);
- ●
- Zij = the standardized vector of normalized characteristics of xij;
- ●
- xij = the value of the ith characteristic in the jth observation;
- ●
- mi = the mean of the ith characteristic;
- ●
- si = the standard deviation of the ith characteristic;
- ●
- T = the transpose of the vector;
- ●
- C−1 = the inverse of the correlation coefficient matrix.
2.2. Mahalanobis–Taguchi System (MTS) Procedures
- ●
- Calculate the mean characteristic in the normal dataset as:
- ●
- Then, calculate the standard deviation for each characteristic:
- ●
- Next, standardise each characteristic to form the normalized data matrix (Zij) and its transpose ():
- ●
- Then, verify that the mean of the normalized data is zero:
- ●
- Verify that the standard deviation of the normalized data is one:
- ●
- Form the correlation coefficient matrix (C) of the normalized data. The element matrix (cij) is calculated as follows:
- ●
- Compute inverse correlation coefficient matrix (C−1)
- n is the number of samples,
- X and Y are two different features being correlated,
- X bar and Y bar are the averages among the data in each variable, and
- V(X) and V(Y) are the variances of X and Y.
- ●
- Finally, calculate the MDj using Equation (2).
2.2.1. The Role of the Orthogonal Array (OA) in MTS
2.2.2. The Role of the SNR in MTS
2.2.3. Larger-the-Better SNR
3. Overview on Common Thresholding Methods in the Mahalanobis Taguchi System
3.1. Quadratic Loss Function
- ●
- MDT = the threshold (in MD term)
- ●
- A = the cost of the complete examination of patients who diagnose as unhealthy (including loss of time),
- ●
- A0 = the monetary loss caused by not taking the complete examination and having the disease show up before the next examination or the loss increase after having subjective symptoms followed by taking a complete examination,
- ●
- D = the mid-value of the MD of a patient group having the subjective symptoms
3.2. Probabilistic Thresholding Method
- ●
- is the average of the MDs of the normal group,
- ●
- sMD is the standard deviation of the MDs of the normal group,
- ●
- λ is a small parameter or the confidence level (typically 5% or 0.05)
- ●
- ω is the percentage of the normal examples whose MDs are smaller than the minimum MD of the remainder abnormal examples and do not overlap with the abnormal MDs.
3.3. Type-I and Type-II Errors Method
- TP (True Positive) = an observation is positive and predicted as positive,
- FP (False Positive) = an observation is negative but predicted as positive,
- TN (True Negative) = an observation is negative and predicted as negative, and
- FN (False Negative) = an observation is positive but predicted as negative.
3.4. ROC Curve Method
3.5. Box–Cox Transformation
4. Datasets
4.1. Medical Diagnosis of Liver Disease Data
4.2. Taguchi’s Character Recognition
5. Results and Discussion
5.1. Variable Reduction Using Mahalanobis–Taguchi System
5.2. Optimum Thresholds
5.3. Classification Accuracy Results
6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Factor | |||||||
---|---|---|---|---|---|---|---|
Run | 1 | 2 | 3 | 4 | 5 | 6 | 7 |
1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
2 | 1 | 1 | 1 | 2 | 2 | 2 | 2 |
3 | 1 | 2 | 2 | 1 | 1 | 2 | 2 |
4 | 1 | 2 | 2 | 2 | 2 | 1 | 1 |
5 | 2 | 1 | 2 | 1 | 2 | 1 | 2 |
6 | 2 | 1 | 2 | 2 | 1 | 2 | 1 |
7 | 2 | 2 | 1 | 1 | 2 | 2 | 1 |
8 | 2 | 2 | 1 | 2 | 1 | 1 | 2 |
Number of Repetition | |||||
---|---|---|---|---|---|
Combinations | Col 1 & Col 2 | Col 1 & Col 3 | Col 1 & Col 7 | Col 3 & Col 6 | |
1 | 1 | 2 | 2 | 2 | 2 |
1 | 2 | 2 | 2 | 2 | 2 |
1 | 2 | 2 | 2 | 2 | 2 |
2 | 2 | 2 | 2 | 2 | 2 |
2 | 1 | 2 | 2 | 2 | 2 |
Factor | MD Computation | SNR | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Run | 1 | 2 | 3 | 4 | 5 | 6 | 7 | |||||
1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | MD1 | MD2 | MD3 | MD4 | SNR1 |
2 | 1 | 1 | 1 | 2 | 2 | 2 | 2 | MD1 | MD2 | MD3 | MD4 | SNR2 |
3 | 1 | 2 | 2 | 1 | 1 | 2 | 2 | MD1 | MD2 | MD3 | MD4 | SNR3 |
4 | 1 | 2 | 2 | 2 | 2 | 1 | 1 | MD1 | MD2 | MD3 | MD4 | SNR4 |
5 | 2 | 1 | 2 | 1 | 2 | 1 | 2 | MD1 | MD2 | MD3 | MD4 | SNR5 |
6 | 2 | 1 | 2 | 2 | 1 | 2 | 1 | MD1 | MD2 | MD3 | MD4 | SNR6 |
7 | 2 | 2 | 1 | 1 | 2 | 2 | 1 | MD1 | MD2 | MD3 | MD4 | SNR7 |
8 | 2 | 2 | 1 | 2 | 1 | 1 | 2 | MD1 | MD2 | MD3 | MD4 | SNR8 |
Averaging | SNRL1 | SNRL1 | SNRL1 | SNRL1 | SNRL1 | SNRL1 | SNRL1 | |||||
SNRL2 | SNRL2 | SNRL2 | SNRL2 | SNRL2 | SNRL2 | SNRL2 | ||||||
Substraction | Gain(+/−) | Gain(+/−) | Gain(+/−) | Gain(+/−) | Gain(+/−) | Gain(+/−) | Gain(+/−) |
Predicted Class | ||
---|---|---|
True Class | Positive | Negative |
Positive | TP | FN |
Negative | FN | TN |
Dataset | No. of Original Variables | No. of Training Data | No. of Testing Data | |||
---|---|---|---|---|---|---|
Normal | Abnormal | Normal | Abnormal | |||
1 | Appendicitis | 7 | 42 | 10 | 43 | 11 |
2 | Banana | 2 | 1188 | 1462 | 1188 | 1462 |
3 | Bupa | 6 | 100 | 72 | 100 | 73 |
4 | Coil2000 | 85 | 4618 | 293 | 4618 | 293 |
5 | Haberman-2 | 3 | 112 | 40 | 113 | 41 |
6 | Heart | 13 | 75 | 60 | 75 | 60 |
7 | Ionosphere | 32 | 112 | 63 | 113 | 63 |
8 | Magic | 10 | 6166 | 3344 | 6166 | 3344 |
9 | Monk2 | 6 | 102 | 114 | 102 | 114 |
10 | Phoneme | 5 | 1909 | 793 | 1909 | 793 |
11 | Pima | 8 | 250 | 134 | 250 | 134 |
12 | Ring | 20 | 1868 | 1832 | 1868 | 1832 |
13 | Sonar | 60 | 65 | 48 | 46 | 49 |
14 | Spambase | 57 | 1392 | 906 | 1393 | 906 |
15 | Spectfheart | 44 | 106 | 27 | 106 | 28 |
16 | Titanic | 3 | 745 | 355 | 745 | 356 |
17 | Wdbc | 30 | 178 | 106 | 179 | 106 |
18 | Wisconsin | 9 | 222 | 119 | 222 | 120 |
19 | Medical Diagnosis of Liver Disease | 17 | 200 | 17 | 43 | 34 |
20 | Taguchi Character Recognition | 14 | 16 | 9 | 2 | 37 |
S.No | Variables | Notation | Notation for Analysis |
---|---|---|---|
1 | Age | X1 | |
2 | Sex | X2 | |
3 | Total protein in blood | TP | X3 |
4 | Albumin in blood | Alb | X4 |
5 | Cholinesterase | Che | X5 |
6 | Glutamate O transaminase | GOT | X6 |
7 | Glutamate P transaminase | GPT | X7 |
8 | Lactate dehydrogenase | LHD | X8 |
9 | Alkanline phosphatase | Alp | X9 |
10 | r-Glutamy transpeptidase | r-GPT | X10 |
11 | Leucine aminopeptidase | LAP | X11 |
12 | Total cholesterol | TCH | X12 |
13 | Triglyceride | TG | X13 |
14 | Phospholipid | PL | X14 |
15 | Creatinime | Cr | X15 |
16 | Blood urea nitrogen | BUN | X16 |
17 | Uric acid | UA | X17 |
No. of Variables | |||||
---|---|---|---|---|---|
Dataset | Before Optimize | After Optimize | Remarks | % Variable Reduction | |
1 | Appendicitis | 7 | 4 | Remove 3 variables | 42.86 |
2 | Banana | 2 | 2 | Maintain Original Variables | 0 |
3 | Bupa | 6 | 5 | Remove 1 variable | 16.67 |
4 | Coil2000 | 85 | 48 | Remove 37 Variables | 43.53 |
5 | Haberman-2 | 3 | 3 | Maintain Original Variables | 0 |
6 | Heart | 13 | 9 | Remove 4 Variables | 30.77 |
7 | Ionosphere | 32 | 26 | Remove 6 variables | 18.75 |
8 | Magic | 10 | 9 | Remove 1 variable | 10.0 |
9 | Monk2 | 6 | 6 | Maintain Original Variables | 0 |
10 | phoneme | 5 | 4 | Remove 1 variable | 20 |
11 | Pima | 8 | 6 | Remove 2 variables | 25 |
12 | Ring | 20 | 20 | Maintain Original Variables | 0 |
13 | Sonar | 60 | 58 | Remove 2 variables | 3.33 |
14 | Spambase | 57 | 28 | Remove 29 variables | 50.88 |
15 | Spectfheart | 44 | 38 | Remove 6 variables | 13.64 |
16 | Titanic | 3 | 2 | Remove 1 variable | 33.33 |
17 | Wdbc | 30 | 13 | Remove 17 variables | 56.67 |
18 | Wisconsin | 9 | 6 | Remove 3 variables | 33.33 |
19 | Medical Diagnosis of Liver Disease | 17 | 8 | Remove 9 variables | 52.94 |
20 | Taguchi Character Recognition | 14 | 14 | Maintain Original Variables | 0 |
Training Dataset | Suggested MDT | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Dataset | Optimum Variables after Optimize | Normal Samples | Abnormal Samples | TypeI-TypeII | ROC Curve | Chebyshev’s Theorem | Box-Cox (λ Value) | Box-Cox (MD Transformed) | Box-Cox (MD Term) | |
1 | Appendicitis | 4 | 42 | 10 | 2.27 | 2.27 | 1.98 | 0.30 | 0.90 | 2.22 |
2 | Banana | 2 | 1188 | 1462 | 0.44 | 0.76 | 1.93 | 0.80 | −0.60 | 0.44 |
3 | Bupa | 5 | 100 | 72 | 0.37 | 0.57 | 2.27 | 0.20 | −0.90 | 0.37 |
4 | Coil2000 | 48 | 4618 | 293 | 0.90 | 0.90 | 1.79 | −0.30 | −0.10 | 0.91 |
5 | Haberman-2 | 3 | 112 | 40 | 1.16 | 1.16 | 2.07 | 0.30 | 0.10 | 1.10 |
6 | Heart | 9 | 75 | 60 | 1.33 | 1.33 | 1.56 | 0.50 | 0.30 | 1.32 |
7 | Ionosphere | 26 | 112 | 63 | 3.64 | 3.64 | 2.92 | 0.30 | 1.90 | 3.55 |
8 | Magic | 9 | 6166 | 3344 | 1.19 | 1.11 | 2.58 | 0.00 | 0.10 | 1.22 |
9 | Monk2 | 6 | 102 | 114 | 1.39 | 1.32 | 1.23 | 1.60 | 0.40 | 1.36 |
10 | phoneme | 4 | 1909 | 793 | 0.83 | 1.00 | 1.91 | 0.50 | −0.20 | 0.81 |
11 | Pima | 6 | 250 | 134 | 1.15 | 1.15 | 1.98 | 0.30 | 0.10 | 1.10 |
12 | Ring | 20 | 1868 | 1832 | 0.73 | 0.97 | 1.33 | 0.70 | 0.80 | 1.89 |
13 | Sonar | 58 | 65 | 48 | 4.39 | 4.39 | 1.38 | 10.80 | 19.90 | 1.65 |
14 | Spambase | 28 | 1392 | 906 | 1.10 | 1.10 | 3.85 | 0.20 | 0.10 | 1.10 |
15 | Spectfheart | 38 | 106 | 27 | 2.31 | 0.86 | 1.45 | 0.30 | 0.90 | 2.22 |
16 | Titanic | 2 | 745 | 355 | 3.08 | 3.08 | 2.49 | 0.30 | 1.30 | 3.00 |
17 | Wdbc | 13 | 178 | 106 | 2.02 | 2.02 | 2.56 | 0.00 | 0.70 | 2.01 |
18 | Wisconsin | 6 | 222 | 119 | 2.80 | 3.19 | 6.08 | 0.30 | 1.20 | 2.79 |
19 | Medical Diagnosis of Liver Disease | 8 | 200 | 17 | 11.52 | 11.52 | 3.63 | 0.20 | 3.10 | 11.16 |
20 | Taguchi Character Recognition | 14 | 16 | 9 | 11.44 | 11.44 | 1.53 | 211.00 | 211.00 | 1.05 |
Testing Dataset | Classification Accuracy (%) Based on MDT Obtained Via: | |||||||
---|---|---|---|---|---|---|---|---|
S.No | Dataset | Optimum Variables after Optimize | Normal Samples | Abnormal Samples | TypeI-TypeII (%) | ROC Curve (%) | Chebyshev’s Theorem (%) | Box-Cox Transformation (%) |
1 | Appendicitis | 4 | 43 | 11 | 70.37 | 70.37 | 66.67 | 70.37 |
2 | Banana | 2 | 1188 | 1462 | 68.49 | 62.11 | 44.91 | 68.49 |
3 | Bupa | 5 | 100 | 73 | 50.87 | 55.49 | 57.23 | 50.87 |
4 | Coil2000 | 48 | 4618 | 293 | 57.95 | 57.95 | 87.62 | 58.79 |
5 | Haberman-2 | 3 | 113 | 41 | 65.58 | 65.58 | 74.68 | 61.69 |
6 | Heart | 9 | 75 | 60 | 74.81 | 74.81 | 75.56 | 74.81 |
7 | Ionosphere | 26 | 113 | 63 | 95.45 | 95.45 | 93.75 | 95.45 |
8 | Magic | 9 | 6166 | 3344 | 74.13 | 73.14 | 75.87 | 74.17 |
9 | Monk2 | 6 | 102 | 114 | 55.09 | 53.24 | 53.24 | 53.70 |
10 | phoneme | 4 | 1909 | 793 | 62.84 | 65.06 | 72.13 | 62.36 |
11 | Pima | 6 | 250 | 134 | 65.36 | 65.36 | 67.97 | 65.89 |
12 | Ring | 20 | 1868 | 1832 | 60.05 | 74.95 | 92.41 | 98.14 |
13 | Sonar | 58 | 46 | 49 | 52.63 | 52.63 | 51.58 | 51.58 |
14 | Spambase | 28 | 1393 | 906 | 82.51 | 82.51 | 78.60 | 82.51 |
15 | Spectfheart | 38 | 106 | 28 | 64.18 | 29.85 | 49.25 | 63.43 |
16 | Titanic | 2 | 745 | 356 | 74.21 | 74.21 | 74.21 | 74.21 |
17 | Wdbc | 13 | 179 | 106 | 91.23 | 91.23 | 92.63 | 91.23 |
18 | Wisconsin | 6 | 222 | 120 | 96.20 | 90.63 | 90.31 | 96.20 |
19 | Medical Diagnosis of Liver Disease | 8 | 43 | 34 | 100 | 100 | 84.00 | 100 |
20 | Taguchi Character Recognition | 14 | 2 | 37 | 97.44 | 97.44 | 94.87 | 94.87 |
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Ramlie, F.; Muhamad, W.Z.A.W.; Harudin, N.; Abu, M.Y.; Yahaya, H.; Jamaludin, K.R.; Abdul Talib, H.H. Classification Performance of Thresholding Methods in the Mahalanobis–Taguchi System. Appl. Sci. 2021, 11, 3906. https://doi.org/10.3390/app11093906
Ramlie F, Muhamad WZAW, Harudin N, Abu MY, Yahaya H, Jamaludin KR, Abdul Talib HH. Classification Performance of Thresholding Methods in the Mahalanobis–Taguchi System. Applied Sciences. 2021; 11(9):3906. https://doi.org/10.3390/app11093906
Chicago/Turabian StyleRamlie, Faizir, Wan Zuki Azman Wan Muhamad, Nolia Harudin, Mohd Yazid Abu, Haryanti Yahaya, Khairur Rijal Jamaludin, and Hayati Habibah Abdul Talib. 2021. "Classification Performance of Thresholding Methods in the Mahalanobis–Taguchi System" Applied Sciences 11, no. 9: 3906. https://doi.org/10.3390/app11093906
APA StyleRamlie, F., Muhamad, W. Z. A. W., Harudin, N., Abu, M. Y., Yahaya, H., Jamaludin, K. R., & Abdul Talib, H. H. (2021). Classification Performance of Thresholding Methods in the Mahalanobis–Taguchi System. Applied Sciences, 11(9), 3906. https://doi.org/10.3390/app11093906