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Article

A Statistical Approach to Identify Appropriate Sampling Scheme Capable of Geographical Identification Analysis of the Protected Origin Pulse Crops in Greece

by
George Tsirogiannis
1,*,
Anastasios Zotos
2,*,
Eleni C. Mazarakioti
1,
Efthimios Kokkotos
1,
Achilleas Kontogeorgos
3,
Angelos Patakas
1 and
Athanasios Ladavos
1
1
Department of Food Science and Technology, University of Patras, 30100 Agrinio, Greece
2
Department of Sustainable Agriculture, University of Patras, 30100 Agrinio, Greece
3
Department of Agriculture, International Hellenic University, 57001 Thessaloniki, Greece
*
Authors to whom correspondence should be addressed.
Appl. Sci. 2023, 13(6), 3623; https://doi.org/10.3390/app13063623
Submission received: 22 December 2022 / Revised: 8 March 2023 / Accepted: 9 March 2023 / Published: 12 March 2023

Abstract

:
In this study, we aimed to develop a sampling method that could be used in geographical discrimination studies of Protected Geographical Indication (PGI) dry beans (Phaseolus vulgaris L.) by considering the geoclimatic variability within the cultivation zone of the analyzed product. The Regional Unit of Kastoria in Greece, a major area of protected designation origin of pulse crops, was selected for detailed investigation. Meteorological data were collected from five weather stations in different subregions of Kastoria (Argos Orestiko, Kalochori, Lakkomata, Lithia, and Polykarpi), over a period of six years (2015 to 2020), along with data of soil texture. The collected data were analyzed in order to determine statistically significant differences among the subregions with regard to the aforementioned parameters. A seasonality pattern was observed for all subregions concerning the microclimate, which splits the data into two clusters. Moreover, a significant variation of the soil textures was revealed, frequently affecting farmers’ decision regarding agronomic practices, leading to the unique stable-isotope ratios and multi-elemental composition. This study guides the dry bean sample collection and will enable the designation of the boundaries of protected origin regions and enable future sampling schemes for stable-isotope and multi-elemental analysis.

1. Introduction

In recent decades, a growing interest in high-quality food products with a clear geographical origin has been observed. This tendency could be attributed to the need for foodstuffs with specific organoleptic qualities associated with particular regional areas and traditional farming production methods. An additional reason could be the consumers’ uncertainty of the quality and safety of non-local products. According to the European Union (EU) Regulation 1151/2012, food products could be characterized by the following geographical indications: Protected Designation of Origin (PDO) and Protected Geographical Indication (PGI). PGI emphasizes the relationship between the specific geographical area and the name of the product, where a certain quality or specific characteristics can be primarily attributed to its geographical origin.
Soil conditions have shown to play an important role in determining the geographical identity of food products, connecting them with distinct characteristics related to their growing area [1,2,3,4,5,6]. Although the concentration of mineral elements found in the surface layers of the soil can be significantly affected by applied agricultural practices, including irrigation and fertilization, the availability of most trace elements in the soil and their subsequent absorption by the plants is strongly affected by the soil mechanical properties [7,8]. Indeed, the soil is considered as a heterogeneous mixture of different organisms and mineral, organic and organo-mineral substances presented in three phases: solid, liquid, gaseous. In this frame, trace metals and rare earth element (REEs) [9,10,11] occur in different species according to whether they are externally or internally bounded to various soil components or in the liquid phase. The solubility of elements, and thus their concentration in the soil solution, depends upon the solubility equilibrium. On the other hand, total levels of elements concentration are rarely indicative of plant availability because the latter depends on soil pH, organic matter content, adsorptive surfaces, and other physical, chemical, and biological conditions in the rhizosphere. Obviously, soil properties affect most of the chemical reactions and processes that occur in the rhizosphere and thus differences in soil properties could be used to accurately survey and map the geographic distribution of soil micronutrient contents and availability at scales ranging from global to sites within single production fields [12].
On the other hand, microclimatic conditions, mainly air temperature, relative humidity, solar radiation, and wind speed, are critical for agricultural production and also influence the geographical origin discrimination. As well as the availability of elements in the soil, differences in microclimatic parameters can seriously affect the stable isotope ratios of specific elements in plant tissues, which can be used for geographical production discrimination [13]. For instance, the stable isotopic ratios of 18O/16O and 2H/1H, which are known to be greatly associated with the geographical origin of food products, depend on the regional climatic conditions and particularly total precipitation and seasonality [14,15,16].
Based on the assumption that the values of the isotopic and elemental profile/composition of food products are decisively influenced by the soil and microclimatic conditions of their cultivation area, the definition and the mapping of the existing geoclimatic variability within the total geographical area from which the samples are collected should be taken into consideration. Thus, the main objective of this study is to develop a sampling method to determine the geographical origin of PGI food products, considering the soil and microclimatic variability of the specific geographical areas, through the creation of sampling subregions within the wider cultivation zone of the examined product.

2. Materials and Methods

Though this study is based on data analysis and design of experiment, here we follow the usual terminology and structure of agronomy and food science where materials and methods follow the preamble.

2.1. Region of Interest

A major area of protected designation origin of pulse crops and in particular dry beans (Phaseolus Vulgaris L.) in Greece is the Regional Unit of Kastoria (Figure 1). It is located in the northwest of Greece, enclosed by the Pindos range, next to the lake Orestiada. This area was selected due to its intriguing geomorphological diversity. The altitude and the slope of the farming land, as well as the distance from the lake, vary significantly. The microclimate and soil texture are expected to vary among subregions influencing and providing special characteristics to the local production of beans [7,8,13,14].
In particular, five individual subregions of the Regional Unit of Kastoria (Argos Orestiko, Kalochori, Lakkomata, Lithia, and Polykarpi) were selected for detailed investigation. Argos Orestiko (40°27′ N, 21°15′ E) is the second largest city of the Regional Unit of Kastoria, located 8 km South of the city of Kastoria, at 660 m above sea level. Next to Argos Orestiko, the Lakkomata settlement (40°25′ N, 21°12′ E) is found, in the southwest of the city of Kastoria, at an altitude of 660 m. In the east of Kastoria, at a distance of 28 km, the villages of Lithia (40°31′ N, 21°24′ E) and Polykarpi (40°31′ N, 21°19′ E) are located, at altitudes of 760 and 640 m, respectively. Finally, the village of Kalochori (40°29′ N, 21°08′ E) is situated in the west of the city of Kastoria, at a distance of 14 km and an altitude of 721 m. The majority of dry bean production is carried out in the above-mentioned subregions, the special soil-climatic characteristics of which result in the special organoleptic characteristics of the final PGI products.

2.2. Data Collection and Analysis

Meteorological data from the automatic weather stations, which have been installed by the Regional Unit of Kastoria to monitor relative humidity, air temperature, wind speed, rainfall and solar radiation, were collected (Figure 2). The data collection period spans a period of six years (2015–2020) to eliminate possible temporal variations. The following data were recorded hourly and the mean daily values were used: solar radiation (W/m2), rainfall (mm), wind speed (km/h), relative humidity (%), air temperature (°C) and reference evapotranspiration—ΕΤο (mm).
Additionally, a total of 364 soil samples were collected [17] from the whole area, distributed as follows: Argos Orestiko—45 samples; Kalochori—104 samples; Lakkomata—89 samples; Lithia—84 samples; and Polykarpi—42 samples. Soil samples were air dried, then crushed and sieved through a 2 mm sieve. Particle size distribution was assessed using Bouyoucos’s method [18]. The soil texture of samples was defined according to USDA particle-size classification diagram [19].

2.3. Statistical Analysis

The analysis is based on descriptive and hypothesis testing statistics of the meteorological and soil texture measurements. With descriptive statistics, we present an overview of the data distributions along with their interactions—pairwise and manifold-like.
The application of multiple statistical tests verified or proved wrong our hypothesis of the similarities among the subregions. Because all possible combinations of subregions were examined, a suitable significance level correction scheme was used. Technical details are given in the following sections.

3. Results and Discussion

3.1. Meteorological Factor

One of the common factors that has a major impact on the special characteristics of protected origin agricultural products such as dry beans is the microclimate of the cultivated area [20,21]. The analysis of the microclimate data allows us to answer the following research question: Is there any statistically significant difference among the subregions regarding the meteorological conditions? The answer to this question will guide the next steps of the detailed designation of the boundaries of protected origin regions and will determine the sampling schemes, as proposed in Section 3.3 for future stable isotope and multi-elemental analysis.

3.1.1. Descriptive Statistics and Topological Data Analysis of the Meteorological Factor

The distributions of the measurements for all subregions are shown in Figure 3. A kernel-based method was used for the computation of the distributions of major diagonal [22]. A good agreement between the distributions of all regions except Lakkomata with respect to the pyranometer (and thus reference evapotranspiration) was observed. This difference provoked a further investigation, and thus a topological data analysis was performed and the computed manifold was projected in the 2D embedding of Figure 4. The main idea of this method [23] is to preserve the topological information of the high dimensional space (i.e., 5D in this case: pyranometer, rainfall, wind speed, relative humidity, air temperature, reference evapotranspiration) and via a non-linear transformation to project the points into the xy-plane. In particular, it can be defined as a non-linear principal component analysis where the points that are similar/neighbors in the 5D space will be close to each other in 2D space, while the dissimilar ones are projected very far away. In Figure 4, a clear separation of Lakkomata can be seen, as well as a seasonality pattern for all subregions, which splits the data into two clusters, i.e., April–May (left cluster) and June–August (right cluster), while September is split between those two clusters. This shows a very strong indication of special microclimatic conditions of the Lakkomata subregion, which is investigated in the next section.

3.1.2. Statistical Analysis and Hypothesis Testing of the Meteorological Factor

Although the descriptive statistical analysis of the previous section concludes that the region of Lakkomata was different, all possible pairs of subregions have been compared for completeness reasons. Since the initial set of data were five-dimensional, Root Sum Square (RSS) was used as a single metric and the hypothetical distribution of this statistic was estimated using resampling and Monte Carlo simulations ([22], ch. 9). The null hypothesis H 0 states that there is no difference between the two regions regarding the RSS mean value. Specifically, the point-to-point difference with respect to the simulated population was computed, and the corresponding probability was estimated. In the case of a common situation, i.e., very central location at the distribution obtained by the Monte Carlo simulation, H 0 is not rejected, while a rare/unlike value leads to the rejection of H 0 .
An interesting pattern was revealed when all pairs of Kastoria subregions were compared, which is in agreement with the observations of the topological data analysis of the previous section. For instance, when Lithia was compared with the RSS distribution of Argos Orestiko, it was observed that the obtained value of Lithia corresponded to a very common/central value of the distribution (Figure 5), and thus, no statistically significant difference could be concluded. On the contrary, if the RSS values of Lithia, Kalochori, Argos Orestiko, and Polykarpi with the distribution of Lakkomata are compared, their values are out of scale (Figure 6). Extremely rare values correspond to nearly zero probability. From a statistical point of view, this leads to a clear rejection of H 0 for all subregions. After visiting the region of Lakkomata and in particular the location of the meteorological station, local farmers helped the research team to investigate if the orientation of this region is such that could be shadowed by neighboring hills/mountains. It was concluded that this is not the case, and from ad hoc measurements of the pyranometer, it revealed that the sensor drifted significantly. When the pyranometer’s indicators were removed from the dataset, no statistically significant difference was found.

3.1.3. Statistical Conclusions on the Meteorological Factor

Based on the statistical analysis of meteorological data of the Kastoria subregion, no significant difference was observed. The lack of significant differences regarding microclimatic data measurements suggests a non-determinate role of these parameters as factors differentiating isotopic and multi-elemental footprint values in the final product.

3.2. Soil Texture Factor

Another critical factor that is expected to influence the special characteristics of the protected origin dry beans of the regional unit of Kastoria is the soil texture. Based on this, a considerable amount of soil samples coming from these subregions were analyzed to answer the following research question: Is there any statistically significant difference among the subregions regarding the soil texture measurements?

3.2.1. Descriptive Statistics of the Soil Texture Factor

In general, low values of clay and medium values of sand were observed. The exact percentages (%) are: Silty Loam (SiL)—34.6; Loam (L)—34.2; Sandy Loam (SL)—15.1; Silty Clay Loam (SiCL)—8.2; Clay Loam (CL)—7.1; Silty Clay (SiC)—0.5; and Loamy Sand (LS)—0.3 Figure 7.
In Figure 8, local patterns are depicted; for example, in the Lakkomata subregion, lower values of Clay and higher values of Sand were shown. These observed patterns are a strong indication of differences between subregions and are statistically examined in the next section.
Figure 7. Distribution of soil samples on texture triangle (Kastoria).
Figure 7. Distribution of soil samples on texture triangle (Kastoria).
Applsci 13 03623 g007

3.2.2. Statistical Analysis and Hypothesis Testing of the Soil Texture Factor

We employed two types of statistical hypothesis tests. The first one is based on categorical data and their corresponding frequencies of soil texture classes, while the second one is based on the numerical values of Sand and Clay, which represent the two major factors of soil texture properties.
The rationale behind this approach is twofold; it is focused on the finest detail of soil texture classes and observed coarser differences based on numerical values. For the former approach, a Freeman–Halton exact test was applied with significance a = 1 × 10−3 [24], and a significance level correction scheme based on the methodology described by Sidak [25]. The latter approach is based on Hotelling’s T-squared test [26] in combination with a similar significance level correction.
Inference based on categorical data:
The null hypothesis ( H 0 ) is: There is no correlation of mechanical class frequency (i.e., columns of contingency table), with the subregion (i.e., rows of contingency table).
By applying the Freeman–Halton exact test on all combinations of subregions, and considering the significance level correction scheme, statistically significant results (i.e., rejection of H 0 ) were observed, as shown in Figure 9. Note: A conservative significance level of a = 1 × 10−3 was chosen, due to the abrupt boundaries of mechanical classes. The full data of the contingency tables and p-values are given in Appendix A (Figure A1 and Table A1).
Inference based on numerical data:
The null hypothesis ( H 0 ) is: There is no difference between the mean values of Sand and Clay measurements in the two subregions.
Data normality and covariance matrix equality are two prerequisites of this test. Both of them are verified by using Henze-Zirkler [27] and Bartlett’s test [28], respectively. Afterwards, the application of Hotelling’s T-squared test provided the following statistically significant results in Figure 10. The full data and p-values are given in Appendix B (Table A2, Table A3, Table A4 and Table A5).

3.2.3. Statistical Conclusions on the Soil Texture Factor

In the Kastoria region, based on the statistical analysis of soil texture, a statistically significant difference was observed among the subregions of Argos Orestiko, Kalochori, Lakkomata, Lithia and Polykarpi. Focusing on the numerical values of Clay and Sand, differences among the subregions of Lithia, Argos Orestiko, and Polykarpi were found. However, based on the detailed information from the soil texture classes, we concluded that all subregions are different. This is very strong evidence that the subregions of Kastoria have dissimilar soil textures and this may influence the spatio-temporal application of the various cultivation practices such as irrigation and fertilization, consequently affecting the stable-isotope ratios and multi-elemental composition.

3.3. Proposed Sampling Schemes

The main goal of the investigation of the differences between the two critical factors, microclimate and soil texture, is to consider possible variability contributors of protected origin dry beans in Greece. The statistical analysis revealed that even though the microclimate is a critical factor, no significant differences were observed in the region of Kastoria. On the contrary, the soil texture in Kastoria should be taken into consideration when local crops are studied. Thus, soil texture statistical analysis enables and directs the sampling scheme of the collection of dry beans. Using the proposed sampling schemes, all possible variability of the yearly production could be captured.
The first sampling scheme focuses on the different soil texture classes and treats subregions as equivalent/identical ones. Thus, the collection of five samples from each soil texture classes was proposed (i.e., LS, SL, L, SiL, CL, SiCL, and SiC) independently of the subregion (five samples were proposed for robust averaging). A random selection was performed.
The second sampling scheme fulfills two objectives simultaneously: the complete coverage of soil texture classes and subregions. In particular, the collection of five samples per subgroup combination is proposed (e.g., five from Polykarpi-SiL, five from Polykarpi-L, and Polykarpi-SL. A total of 120 samples are distributed in the following subregions: Polykarpi: SiL-L-SL; Argos Orestiko: SiL-L-SL-SiCL-CL-SiC-LS; Lithia: SiL-L-SL; Lakkomata: SiL-L-SL-SiCL-CL; Kalochori: SiL-L-SL-SiCL-CL-SiC. A random selection was performed.

4. Conclusions and Future Work

Even though initially the intense geographical profile of the subregions appeared to be an interesting and promising microclimate regulator, in our study this was not confirmed. It was shown that all subregions share a common microclimate. The statistical analysis showed that only the soil texture is a significant factor and, thus, a potential discriminant component for the Phaseolus vulgaris L. dry beans PGI of Kastoria. For these reasons, soil texture classes of different subregions have been included in the proposed sampling schemes, as an expected main contributor of the variability of stable isotope ratios and multi-elemental analysis, for the determination of the geographical origin. Based on the proposed schemes, samples of dry beans were collected and are currently being analyzed for designation and an accurate geographical identification of the Kastoria region. The results will be presented in a future paper.

Author Contributions

Conceptualization, G.T., A.Z., A.P. and A.L.; methodology, G.T., A.Z., A.P. and A.K.; validation, G.T., A.Z., E.C.M., E.K., A.P., A.L. and A.K.; investigation, G.T. and A.Z.; resources, A.P., A.L. and A.K.; data curation, G.T., A.Z., E.C.M. and E.K.; writing—original draft preparation, G.T. and A.Z.; writing—review and editing, G.T., A.Z., E.C.M., E.K., A.P., A.K. and A.L.; visualization, G.T. and A.Z.; supervision, A.P. and A.L.; project administration, A.P.; funding acquisition, A.P. and A.L. All authors have read and agreed to the published version of the manuscript.

Funding

This research has been financed by the Public Investment Programme/General Secretariat for Research and Innovation, under the call “YPOERGO 3, code 2018SE01300000: project title: ‘Elaboration and implementation of methodology for authenticity and geographical origin assessment of agricultural products’”.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Informed consent was obtained from all subjects involved in the study.

Data Availability Statement

Not applicable.

Acknowledgments

Soil data comes from the Institute of Soil and Water Resources (SWRI), a research unit of the Hellenic Agricultural Organisation “DEMETER”, which were collected to create the soil map of Western Macedonia.

Conflicts of Interest

The authors declare no conflict of interest.

Appendix A

Figure A1. Contingency tables of Kastoria region.
Figure A1. Contingency tables of Kastoria region.
Applsci 13 03623 g0a1
Table A1. p-values of Freeman-Halton exact test based on the above contingency tables.
Table A1. p-values of Freeman-Halton exact test based on the above contingency tables.
Polykarpi vs. Argos Orestiko8.306559111725096 × 10−6
Polykarpi vs. Lithia0.0002053205823589391
Polykarpi vs. Lakkomata3.6336856485210914 × 10−6
Polykarpi vs. Kalochori0.0015215140410542742
Argos Orestiko vs. Lithia5.044428484837929 × 10−11
Argos Orestiko vs. Lakkomata0.22004126416018469
Argos Orestiko vs. Kalochori1.3230744173263569 × 10−6
Lithia vs. Lakkomata4.658235373877026 × 10−10
Lithia vs. Kalochori4.682843816824416 × 10−6
Lakkomata vs. Kalochori 1.2315974377714092 × 10−12

Appendix B

Table A2. Soil texture measurements of Kastoria Region.
Table A2. Soil texture measurements of Kastoria Region.
Mechanical ClassSand (%)Clay (%)Silt (%)Sub-Region
SL70822POLYKARPI
L402238ARGOS ORESTIKO
CL402832ARGOS ORESTIKO
SL50842LITHIA
L401248LITHIA
L381646LITHIA
SL54640LITHIA
L501436LITHIA
SL56638LITHIA
SiL301654LITHIA
L441442LITHIA
L401446LITHIA
SL52642LITHIA
SL46648LITHIA
SL46450LITHIA
SL46846LITHIA
L461044LITHIA
L401248LITHIA
SL64432LITHIA
CL242848ARGOS ORESTIKO
L501238ARGOS ORESTIKO
L421246ARGOS ORESTIKO
SiCL143056ARGOS ORESTIKO
LS76420ARGOS ORESTIKO
SiL182062POLYKARPI
SiL301654POLYKARPI
L441640POLYKARPI
L421444POLYKARPI
SiL341056LITHIA
SiL301456LITHIA
L461044LITHIA
SiL301456LITHIA
SL48646LITHIA
SiL261856ARGOS ORESTIKO
SiL261658ARGOS ORESTIKO
SiCL123058ARGOS ORESTIKO
CL303040ARGOS ORESTIKO
L401446ARGOS ORESTIKO
L501832LAKKOMATA
CL223048LAKKOMATA
L302248LAKKOMATA
L401644LAKKOMATA
L461440LAKKOMATA
SiCL182854LAKKOMATA
L382240LAKKOMATA
L322246LAKKOMATA
L322444LAKKOMATA
CL283042LAKKOMATA
L302446LAKKOMATA
CL303040LAKKOMATA
SiL341650LITHIA
L401644KALOCHORI
SiL202258KALOCHORI
SiL242254KALOCHORI
SiL282052KALOCHORI
SiL262054KALOCHORI
SiL162460KALOCHORI
SiL242650KALOCHORI
SiCL163054KALOCHORI
SiCL203248KALOCHORI
SiCL124048KALOCHORI
SiCL163450KALOCHORI
CL223048KALOCHORI
L381844ARGOS ORESTIKO
L322246KALOCHORI
L282448KALOCHORI
L461638ARGOS ORESTIKO
L501634ARGOS ORESTIKO
SiL262450ARGOS ORESTIKO
SiC124246ARGOS ORESTIKO
L382042ARGOS ORESTIKO
L302446LAKKOMATA
L462034LAKKOMATA
CL242848LAKKOMATA
SiL222454LAKKOMATA
SiCL183052LAKKOMATA
SL521236LAKKOMATA
SiL242452LAKKOMATA
SiCL183646LAKKOMATA
L302248LAKKOMATA
CL243046LAKKOMATA
SiCL162856LAKKOMATA
SL521236LAKKOMATA
L401644LAKKOMATA
L381844LAKKOMATA
SL541036LAKKOMATA
L302446LAKKOMATA
L341848LAKKOMATA
SiL262252LAKKOMATA
L341848LAKKOMATA
SL541036LAKKOMATA
L421642LAKKOMATA
CL302842ARGOS ORESTIKO
CL342838ARGOS ORESTIKO
SiL242254KALOCHORI
SiL202456KALOCHORI
SiCL202852KALOCHORI
L362044KALOCHORI
SiC164242KALOCHORI
L362044KALOCHORI
L402436KALOCHORI
SiL20476KALOCHORI
SiL242452KALOCHORI
SiCL163450KALOCHORI
SiL142660KALOCHORI
SiCL142858KALOCHORI
SiCL102862KALOCHORI
SiL222454KALOCHORI
L381646ARGOS ORESTIKO
SL52840LITHIA
L441046LITHIA
SiL301456LITHIA
SL56836LITHIA
SiL301852LITHIA
SL56836LITHIA
L381448LITHIA
SL64630LITHIA
SiL381052LITHIA
SiL301456LITHIA
SL48646LITHIA
SiL401050POLYKARPI
SiL341452POLYKARPI
SL44650LITHIA
SL54838LITHIA
SiL302050LITHIA
SL54640LITHIA
SL60634LITHIA
SL50446LITHIA
SL50644LITHIA
SiL361450LITHIA
SiL381052LITHIA
SiL401050LITHIA
L501238LITHIA
SL60832LITHIA
L501436LITHIA
SL541036LITHIA
SL58636LITHIA
SL54838LITHIA
L382042LITHIA
L501238LITHIA
L481438LITHIA
SL581032LITHIA
SL541234LITHIA
L461440LITHIA
SL521038LITHIA
SL56836LITHIA
L401446LITHIA
SiL242056LITHIA
SL58834LITHIA
SL561232LITHIA
SL541036LITHIA
L501436LITHIA
L462034LITHIA
SiL261658POLYKARPI
SL58834POLYKARPI
SiL281656POLYKARPI
SiL341056POLYKARPI
SiL182458POLYKARPI
L342046POLYKARPI
SiL102664POLYKARPI
SiL341650POLYKARPI
L461440POLYKARPI
SiL122662POLYKARPI
SiL222652POLYKARPI
SiL262054POLYKARPI
SiL222058POLYKARPI
SiL182062POLYKARPI
L341848POLYKARPI
L402634POLYKARPI
SiL262054KALOCHORI
CL302842KALOCHORI
SiL222058KALOCHORI
SiL222058KALOCHORI
SiL222256KALOCHORI
SiL302050KALOCHORI
SiL301654KALOCHORI
SiL321652KALOCHORI
SiL282052KALOCHORI
SiL202258KALOCHORI
SiL242056KALOCHORI
SiL222058KALOCHORI
CL243838LAKKOMATA
CL223642LAKKOMATA
CL283042LAKKOMATA
SiCL143056LAKKOMATA
SL541036POLYKARPI
SiL401050LITHIA
L421048LITHIA
SL581032LITHIA
SiL381052LITHIA
SiL301852LITHIA
SiL301654LITHIA
SiL40852LITHIA
SL52840LITHIA
SiCL144046KALOCHORI
SiCL143056KALOCHORI
SL541234KALOCHORI
L401446KALOCHORI
L441244POLYKARPI
L361648POLYKARPI
L361846POLYKARPI
SiL281656LITHIA
SiCL143848ARGOS ORESTIKO
SiCL143254ARGOS ORESTIKO
CL343432ARGOS ORESTIKO
SiCL203050ARGOS ORESTIKO
L382438ARGOS ORESTIKO
CL243046ARGOS ORESTIKO
SL521632ARGOS ORESTIKO
SL521038ARGOS ORESTIKO
L401248ARGOS ORESTIKO
SiL282250LAKKOMATA
L322048ARGOS ORESTIKO
SiL301654ARGOS ORESTIKO
CL322840ARGOS ORESTIKO
L441838LAKKOMATA
SL541036LAKKOMATA
SiL242452LAKKOMATA
SiL301852LAKKOMATA
L342046LAKKOMATA
L322444LAKKOMATA
L302248LAKKOMATA
L382240LAKKOMATA
L402040LAKKOMATA
CL223048LAKKOMATA
SL522028LAKKOMATA
L501238ARGOS ORESTIKO
SiL202456LAKKOMATA
L302248LAKKOMATA
L441838LAKKOMATA
SL541432LAKKOMATA
L421840LAKKOMATA
SiL242650LAKKOMATA
CL383626LAKKOMATA
L442630LAKKOMATA
SiCL203050LAKKOMATA
L302446LAKKOMATA
CL263836LAKKOMATA
L381844LAKKOMATA
SiL302050LAKKOMATA
SiL302050LAKKOMATA
L322048LAKKOMATA
L461836LAKKOMATA
L322048LAKKOMATA
SiL262252KALOCHORI
CL223048KALOCHORI
SiL262450KALOCHORI
SiCL162856KALOCHORI
SiL262450ARGOS ORESTIKO
L342244ARGOS ORESTIKO
SiL142066POLYKARPI
L501832POLYKARPI
SL48844LITHIA
L481042LITHIA
SiL241858KALOCHORI
SiL261856KALOCHORI
SiL202060KALOCHORI
SiL301456KALOCHORI
SiL261856KALOCHORI
SiL241858KALOCHORI
SiL281458KALOCHORI
SiL262252KALOCHORI
SiL261658KALOCHORI
SiL261460KALOCHORI
SiL301654KALOCHORI
SiL242254KALOCHORI
SiL242056KALOCHORI
L402040KALOCHORI
L382042KALOCHORI
SiL262450KALOCHORI
L322246KALOCHORI
SiL282052KALOCHORI
L462034KALOCHORI
L361846KALOCHORI
SiL222454KALOCHORI
SiL262054KALOCHORI
SiL262252KALOCHORI
SiL301654KALOCHORI
SiCL202852KALOCHORI
SiCL84052KALOCHORI
SiL122464KALOCHORI
SiL321256KALOCHORI
SiL161668KALOCHORI
SiL102664KALOCHORI
L341848KALOCHORI
L341848KALOCHORI
SiCL202852KALOCHORI
L302644KALOCHORI
SiL202654KALOCHORI
SL581032KALOCHORI
SiL321652KALOCHORI
L401248KALOCHORI
SiL202456KALOCHORI
SiL281854KALOCHORI
SiL302050KALOCHORI
L262648KALOCHORI
L362044KALOCHORI
L322048KALOCHORI
SL76618POLYKARPI
L502030POLYKARPI
L501040ARGOS ORESTIKO
L381646ARGOS ORESTIKO
SL48844LITHIA
L381448LITHIA
SiL281854POLYKARPI
SiL241858POLYKARPI
SiL241660POLYKARPI
L381844POLYKARPI
L481438POLYKARPI
SiL281458POLYKARPI
L361846POLYKARPI
SiL262054POLYKARPI
L361648POLYKARPI
SiL162658POLYKARPI
SiL341650LITHIA
SL50842LITHIA
SiL281458LITHIA
L401644LITHIA
SiL182458LITHIA
L381646LITHIA
L422038LAKKOMATA
SL601426LAKKOMATA
L322642LAKKOMATA
SiL242452LAKKOMATA
SiCL182854LAKKOMATA
CL283042LAKKOMATA
SL521830LAKKOMATA
L461638LAKKOMATA
SL621226LAKKOMATA
L501238LAKKOMATA
L481438LAKKOMATA
SL561232LAKKOMATA
L441442LAKKOMATA
L441244LAKKOMATA
L461242LAKKOMATA
L441442LAKKOMATA
L361846LAKKOMATA
L461242LAKKOMATA
L342046LAKKOMATA
SiL302050LAKKOMATA
L461044KALOCHORI
L342442ARGOS ORESTIKO
L501436ARGOS ORESTIKO
L401842ARGOS ORESTIKO
SiL242056ARGOS ORESTIKO
SiL242452ARGOS ORESTIKO
SiCL182854ARGOS ORESTIKO
SiL261658KALOCHORI
SiL361450KALOCHORI
SiL262054KALOCHORI
SiL281854KALOCHORI
SiCL203446KALOCHORI
SiL242452KALOCHORI
SiCL182854KALOCHORI
CL223048KALOCHORI
SiCL123058KALOCHORI
L302248LAKKOMATA
CL282844LAKKOMATA
L501436LAKKOMATA
SiL361450POLYKARPI
SiL262450KALOCHORI
SiL242650KALOCHORI
SiL381250LITHIA
CL363034ARGOS ORESTIKO
Table A3. p-values of Henze-Zirkler test.
Table A3. p-values of Henze-Zirkler test.
Polykarpi0.6662727714078320.16031658465601523
Lithia1.02848533027166280.029673729263590087
Lakkomata1.95592873792739460.0001111020613499396
Argos Orestiko0.351094310683116860.7722480057196142
Kalochori1.6103759541760910.0009399490740980984
Table A4. p-values of Bartlett’s test.
Table A4. p-values of Bartlett’s test.
Polykarpi vs. Argos Orestiko0.01938135940700507
Polykarpi vs. Lithia0.00045249555393457185
Argos Orestiko vs. Lithia0.988532912979268
Table A5. p-values of Hotteling’s test.
Table A5. p-values of Hotteling’s test.
Polykarpi vs. Lithia3.4544010000000000 × 10−9
Argos Orestiko vs. Lithia2.8390020000000000 × 10−17

References

  1. Oda, H.; Kawasaki, A.; Hirata, T. Determination of the Geographic Origin of Brown-Rice with Isotope Ratios of 11B/10B and 87Sr/86Sr. Anal. Sci. 2002, 17, i1627–i1630. [Google Scholar] [CrossRef]
  2. Kawasaki, A.; Oda, H.; Hirata, T. Determination of strontium isotope ratio of brown rice for estimating its provenance. Soil Sci. Plant Nutr. 2002, 48, 635–640. [Google Scholar] [CrossRef]
  3. Chung, I.-M.; Kim, J.-K.; Prabakaran, M.; Yang, J.-H.; Kim, S.-H. Authenticity of rice (Oryza sativa L.) geographical origin based on analysis of C, N, O and S stable isotope ratios: A preliminary case report in Korea, China and Philippine. J. Sci. Food Agric. 2016, 96, 2433–2439. [Google Scholar] [CrossRef] [PubMed]
  4. Barbaste, M.; Robinson, K.; Guilfoyle, S.; Medina, B.; Lobinski, R. Precise determination of the strontium isotope ratios in wine by inductively coupled plasma sector field multicollector mass spectrometry (ICP-SF-MC-MS). J. Anal. At. Spectrom. 2002, 17, 135–137. [Google Scholar] [CrossRef]
  5. Swoboda, S.; Brunner, M.; Boulyga, S.F.; Galler, P.; Horacek, M.; Prohaska, T. Identification of Marchfeld asparagus using Sr isotope ratio measurements by MC-ICP-MS. Anal. Bioanal. Chem. 2008, 390, 487–494. [Google Scholar] [CrossRef]
  6. Bong, Y.-S.; Shin, W.-J.; Gautam, M.K.; Jeong, Y.-J.; Lee, A.-R.; Jang, C.-S.; Lim, Y.-P.; Chung, G.-S.; Lee, K.-S. Determining the geographical origin of Chinese cabbages using multielement composition and strontium isotope ratio analyses. Food Chem. 2012, 135, 2666–2674. [Google Scholar] [CrossRef]
  7. Zhao, H.; Guo, B.; Wei, Y.; Zhang, B. Multi-element composition of wheat grain and provenance soil and their potentialities as fingerprints of geographical origin. J. Cereal Sci. 2013, 57, 391–397. [Google Scholar] [CrossRef]
  8. Laursen, K.H.; Schjoerring, J.K.; Olesen, J.E.; Askegaard, M.; Halekoh, U.; Husted, S. Multielemental Fingerprinting as a Tool for Authentication of Organic Wheat, Barley, Faba Bean, and Potato. J. Agric. Food Chem. 2011, 59, 4385–4396. [Google Scholar] [CrossRef]
  9. Danezis, G.P.; Georgiou, C.A. Elemental metabolomics: Food elemental assessment could reveal geographical origin. Curr. Opin. Food Sci. 2022, 44, 100812. [Google Scholar] [CrossRef]
  10. Zhao, H.; Yang, Q. The suitability of rare earth elements for geographical traceability of tea leaves. J. Sci. Food Agric. 2019, 99, 6509–6514. [Google Scholar] [CrossRef]
  11. Magdas, D.A.; Feher, I.; Cristea, G.; Voica, C.; Tabaran, A.; Mihaiu, M.; Cordea, D.V.; Bâlteanu, V.A.; Dan, S.D. Geographical origin and species differentiation of Transylvanian cheese. Comparative study of isotopic and elemental profiling vs. DNA results. Food Chem. 2019, 277, 307–313. [Google Scholar] [CrossRef] [PubMed]
  12. White, J.G.; Zasoski, R.J. Mapping soil micronutrients. Field Crops Res. 1999, 60, 11–26. [Google Scholar] [CrossRef]
  13. Chiocchini, F.; Portarena, S.; Ciolfi, M.; Brugnoli, E.; Lauteri, M. Isoscapes of carbon and oxygen stable isotope compositions in tracing authenticity and geographical origin of Italian extra-virgin olive oils. Food Chem. 2016, 202, 291–301. [Google Scholar] [CrossRef] [Green Version]
  14. Greenough, J.D.; Fryer, B.J.; Mallory-Greenough, L. Trace element geochemistry of Nova Scotia (Canada) maple syrup. Can. J. Earth Sci. 2010, 47, 1093–1110. [Google Scholar] [CrossRef]
  15. Vinci, G.; Preti, R.; Tieri, A.; Vieri, S. Authenticity and quality of animal origin food investigated by stable-isotope ratio analysis. J. Sci. Food Agric. 2013, 93, 439–448. [Google Scholar] [CrossRef] [PubMed]
  16. Maione, C.; Araujo, E.M.; dos Santos-Araujo, S.N.; Boim, A.G.F.; Barbosa, R.M.; Alleoni, L.R.F. Determining the geographical origin of lettuce with data mining applied to micronutrients and soil properties. Sci. Agric. 2021, 79. [Google Scholar] [CrossRef]
  17. Sabbe, W.E.; Marx, D.B. Soil Sampling: Spatial and Temporal Variability. In Soil Testing: Sampling, Correlation, Calibration, and Interpretation; John Wiley & Sons, Ltd.: Hoboken, NJ, USA, 1987; pp. 1–14. ISBN 978-0-89118-916-9. [Google Scholar]
  18. Bouyoucos, G.J. Hydrometer Method Improved for Making Particle Size Analyses of Soils1. Agron. J. 1962, 54, 464–465. [Google Scholar] [CrossRef]
  19. Soil Survey Manual (Hardcover)|Hooked. Available online: https://www.hookedlansing.com/book/9780160937439 (accessed on 5 March 2023).
  20. Magkos, F.; Arvaniti, F.; Zampelas, A. Organic food: Nutritious food or food for thought? A review of the evidence. Int. J. Food Sci. Nutr. 2003, 54, 357–371. [Google Scholar] [CrossRef]
  21. Young, K.L.; Woo, M.; Edlund, S.A. Influence of Local Topography, Soils, and Vegetation on Microclimate and Hydrology at a High Arctic Site, Ellesmere Island, Canada. Arct. Alp. Res. 1997, 29, 270–284. [Google Scholar] [CrossRef]
  22. Bruce, P.; Bruce, A.; Gedeck, P. Practical Statistics for Data Scientists: 50+ Essential Concepts Using R and Python; O’Reilly Media, Inc.: Newton, MA, USA, 2020; ISBN 978-1-4920-7291-1. [Google Scholar]
  23. McInnes, L.; Healy, J.; Melville, J. UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction. arXiv 2020. [Google Scholar] [CrossRef]
  24. Freeman, G.H.; Halton, J.H. Note on an exact treatment of contingency, goodness of fit and other problems of significance. Biometrika 1951, 38, 141–149. [Google Scholar] [CrossRef] [PubMed]
  25. Sidak, Z. Rectangular Confidence Regions for the Means of Multivariate Normal Distributions. J. Am. Stat. Assoc. 1967, 62, 626–633. [Google Scholar] [CrossRef]
  26. Hotelling, H. The Generalization of Student’s Ratio. Ann. Math. Stat. 1931, 2, 360–378. [Google Scholar] [CrossRef]
  27. Henze, N.; Zirkler, B. A class of invariant consistent tests for multivariate normality. Commun. Stat.-Theory Methods 1990, 19, 3595–3617. [Google Scholar] [CrossRef]
  28. Bartlett, M.S.; Fowler, R.H. Properties of sufficiency and statistical tests. Proc. R. Soc. Lond. Ser.-Math. Phys. Sci. 1937, 160, 268–282. [Google Scholar] [CrossRef]
Figure 1. Study Area of PGI beans products.
Figure 1. Study Area of PGI beans products.
Applsci 13 03623 g001
Figure 2. Distribution of the weather station in the region of Kastoria.
Figure 2. Distribution of the weather station in the region of Kastoria.
Applsci 13 03623 g002
Figure 3. Pairwise plots of wind speed (km/h), relative humidity (%), pyranometer (W/m2), air temperature (°C), ETo (mm) and rainfall (mm) from Kastoria.
Figure 3. Pairwise plots of wind speed (km/h), relative humidity (%), pyranometer (W/m2), air temperature (°C), ETo (mm) and rainfall (mm) from Kastoria.
Applsci 13 03623 g003
Figure 4. Topological data analysis of meteorological data from Kastoria.
Figure 4. Topological data analysis of meteorological data from Kastoria.
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Figure 5. RSS distribution of meteorological data from Argos Orestiko vs. Lithia.
Figure 5. RSS distribution of meteorological data from Argos Orestiko vs. Lithia.
Applsci 13 03623 g005
Figure 6. RSS distribution of meteorological data from Lakkomata. The RSS values of all other subregions are out of scale: Kalochori 102.13, Lithia 158.09, Argos Orestiko 168.51 and Polykarpi 146.69.
Figure 6. RSS distribution of meteorological data from Lakkomata. The RSS values of all other subregions are out of scale: Kalochori 102.13, Lithia 158.09, Argos Orestiko 168.51 and Polykarpi 146.69.
Applsci 13 03623 g006
Figure 8. Distribution of soil samples on texture triangle (different colors correspond to major subregions of Kastoria).
Figure 8. Distribution of soil samples on texture triangle (different colors correspond to major subregions of Kastoria).
Applsci 13 03623 g008
Figure 9. Statistically significant results of soil texture (categorical data; soil texture classes).
Figure 9. Statistically significant results of soil texture (categorical data; soil texture classes).
Applsci 13 03623 g009
Figure 10. Statistically significant results of soil texture (numerical data; Clay and Sand).
Figure 10. Statistically significant results of soil texture (numerical data; Clay and Sand).
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Tsirogiannis, G.; Zotos, A.; Mazarakioti, E.C.; Kokkotos, E.; Kontogeorgos, A.; Patakas, A.; Ladavos, A. A Statistical Approach to Identify Appropriate Sampling Scheme Capable of Geographical Identification Analysis of the Protected Origin Pulse Crops in Greece. Appl. Sci. 2023, 13, 3623. https://doi.org/10.3390/app13063623

AMA Style

Tsirogiannis G, Zotos A, Mazarakioti EC, Kokkotos E, Kontogeorgos A, Patakas A, Ladavos A. A Statistical Approach to Identify Appropriate Sampling Scheme Capable of Geographical Identification Analysis of the Protected Origin Pulse Crops in Greece. Applied Sciences. 2023; 13(6):3623. https://doi.org/10.3390/app13063623

Chicago/Turabian Style

Tsirogiannis, George, Anastasios Zotos, Eleni C. Mazarakioti, Efthimios Kokkotos, Achilleas Kontogeorgos, Angelos Patakas, and Athanasios Ladavos. 2023. "A Statistical Approach to Identify Appropriate Sampling Scheme Capable of Geographical Identification Analysis of the Protected Origin Pulse Crops in Greece" Applied Sciences 13, no. 6: 3623. https://doi.org/10.3390/app13063623

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