3.1. A—Oriental Type Varieties
Concerning the yield, the results of the three-Factor ANOVA are shown in
Table 3, and it was found that all three factors as main effects, were statistically significant (Cultivation year:
p < 0.001, Area:
p = 0.001, Variety:
p < 0.001). The results of the corresponding post hoc analysis are shown in the
Supplementary Materials (Supplementary Tables S4–S6). Particularly, regarding the cultivation year, statistically significant differences in the yield were observed between 2014 and both 2015 (
p = 0.007), and 2016 (
p < 0.001), but not between 2015 and 2016 (
p = 0.322) (
Supplementary Table S4A). The Tukey HSD included cultivation years 2015 and 2016 in the first homogeneous subset, while the year 2014 exhibited a much larger yield mean value and constituted by itself the second homogeneous subset (
Supplementary Table S4B). Concerning the factor area, statistically significant differences were observed between Aitoloakarnania, both Serres (
p = 0.002) and Xanthi (
p = 0.032), and between Karditsa and Serres (
p = 0.010), (
Supplementary Table S5A). The three homogeneous subsets obtained in this case were not distinct from each other as in the case of the cultivation year, on the contrary, they all exhibited overlaps (
Supplementary Table S5B). In the case of variety, post hoc analysis detected four statistically significant differences in the yield, which were all related to K53 (vs. DOXATO,
p < 0.001; vs. N34,
p < 0.001; vs. X2A,
p < 0.001; vs. X81,
p = 0.007) (
Supplementary Table S6A). More specifically, K53 exhibited a mean value that was statistically significantly higher compared to all other varieties. This is further shown in (
Supplementary Table S6B), where K53 with a yield of 1652.367 kg/ha constituted the second subset, while all other varieties were included in the first one.
Regarding the pairwise interactions of the three factors (
Table 3), it was found that the area exhibited significant interaction related to yield with both variety (
p = 0.023), and cultivation year (
p < 0.001). The corresponding plots, where the mean yield is displayed for all combinations of the factors’ categories in each of the three pairwise interaction assessments are presented in
Figure 2A–C, respectively. In
Figure 2A, it is shown that the interaction between area and variety may be attributed to a large extent to the fact that variety K53 exhibited a much larger mean value in Katerini (1979.633 kg/ha), compared to the remaining four varieties in Katerini, which exhibited an overall mean value of 1309.075 kg/ha (see
Supplementary Table S1 for the specific values in the remaining four varieties), while, e.g., in Aitoloakarnania, and in Xanthi, K53 exhibited a lower mean value compared to two of the remaining varieties. At the same time, the variety X81 exhibited a larger mean value in Xanthi (1631.667 kg/ha), compared to the remaining four varieties (overall mean = 1429.834 kg/ha), while in all other areas, it exhibited a lower value compared to, at least, variety K53. Similarly, X2A exhibited a larger mean value in Xanthi (1550.000 kg/ha), compared to the remaining three varieties (only excluding X81), while in the remaining areas it exhibited, in general, lower values, particularly, the lowest mean yield in Aitoloakarnania, and Katerini. In
Figure 2B, it is shown that the interaction between area and cultivation year is very strong. A characteristic example is that the yield exhibited far larger mean values in 2014, compared to 2015 and 2016, in Aitoloakarnania, Karditsa, Katerini, and, Xanthi, while in Serres, it exhibited the lowest mean value (
Supplementary Table S2). In
Figure 2C, it is shown that the interaction between variety and cultivation year is mild, with the pattern of the mean yield across the five different varieties being similar in the three years of cultivation considered (
Supplementary Table S3).
In addition, the Pearson correlation coefficient values among the yield, and the nitrates, sugars, and nicotine were computed, and the results are shown in
Table 4. It is shown that the value of the Pearson correlation coefficient exhibited great variation between different groups of the same factor. For example, within the factor area, it was equal to 0.755 (
p = 0.001) between the yield and the nitrates in Karditsa, while it was almost zero (0.022,
p = 0.939) in Katerini. Also, this linear correlation between the yield and the nitrates in Karditsa was the only positive linear correlation that was found to be statistically significant. There were also two statistically significant negative linear correlations corresponding to the yield and the sugars in Karditsa (−0.538,
p = 0.039), and the yield and the sugars in 2016 (−0.501,
p = 0.024).
Regarding nicotine content, the results of the three-factor ANOVA are shown in
Table 5. It was found that two of the factors were statistically significant as main effects (Cultivation year:
p = 0.012, and Variety:
p = 0.033). The corresponding results of the post hoc analysis are shown in the
Supplementary Materials (Supplementary Tables S10–S12). As far as the cultivation year is concerned, statistically significant differences in nicotine were only observed between 2015 and 2016 (
p = 0.009) (
Supplementary Table S10A). Concerning area, no statistically significant differences were observed (
Supplementary Table S11A,B). In the case of variety, only one statistically significant difference was detected, related to K53 and X2A with
p = 0.045 (
Supplementary Table S12A).
Regarding pairwise interactions, the only statistically significant one was found in the case of cultivation year and area (
p = 0.023) (
Table 5). In the corresponding plot (
Figure 3B), it is shown, in particular, that the year 2015 exhibited different patterns across the different areas, with the mean nicotine in Katerini assuming the lowest value of all 1.252%, (
Supplementary Table S8). In accordance with
Table 5,
Figure 3A,C shows that the corresponding interactions are non-existent for area vs. both variety and cultivation year.
In
Table 6, the results of the three-Factor ANOVA concerning the sugar content are displayed. It was found that all factors were statistically significant as main effects (Cultivation year:
p < 0.001, Area:
p < 0.001, and Variety:
p = 0.005). The results of the related post hoc analysis are shown in the
Supplementary Materials (Supplementary Tables S16–S18). Regarding the cultivation year, statistically significant differences in the sugars were obtained between 2015, and both 2014 and 2016 (
p < 0.001 in both cases) (
Supplementary Table S16A). The year 2015 exhibited higher mean sugars value compared to both other years and was, thus, discerned from them, constituting a separate subset in itself (
Supplementary Table S16B), while the years 2014 and 2016 were included in another subset. Concerning area, statistically significant differences were observed in the cases of Aitoloakarnania and both Karditsa (
p = 0.001), and Xanthi (
p < 0.001), and Katerini and Xanthi (
p = 0.003) (
Supplementary Table S17A). In the case of variety, two statistically significant differences were detected (K53 vs. N34,
p = 0.050, and N34 vs. X2A
p = 0.002,
Supplementary Table S18A).
Regarding the pairwise interactions of the three factors (
Table 6), it was found that the cultivation year with both area and variety exhibited significant interactions (
p < 0.001,
p = 0.030, respectively). In
Figure 4B, it is further shown that area and cultivation year interact, particularly, the year 2016 exhibited different patterns across the different areas compared to years 2014 and 2015 (see
Supplementary Table S14 for specific sugars values).
Figure 4C demonstrates that the interaction found between cultivation year and variety was marginal, again mainly attributed to the year 2016, while
Figure 4A shows that the corresponding interaction is not strong.
3.2. B—Flue and Air Cured Type Varieties
Concerning the yield of B-type tested varieties, the results of the three-factor ANOVA are shown in
Table 7. It was found that all three factors as main effects were statistically significant (Cultivation year:
p = 0.003, Area:
p < 0.001, Variety:
p = 0.017). The results of the post hoc analysis regarding the main effects are shown in the
Supplementary Materials (Supplementary Tables S22–S24). More specifically, in the case of cultivation year, the year 2014 exhibited the highest mean yield value 3343.889 kg/ha—(
Supplementary Table S22B), and statistically significant differences compared to both other years (vs. 2015:
p = 0.006, vs. 2016:
p = 0.009,
Supplementary Table S22A). Consequently, the Tukey HSD included cultivation years 2015 and 2016 in the first homogeneous subset, and the year 2014 in the second homogeneous subset (
Supplementary Table S22B). Concerning the factor area, two statistically significant differences were observed (Aitoloakarnania vs. Karditsa:
p < 0.001, and Xanthi vs. Karditsa:
p < 0.001,
Supplementary Table S23A). More specifically, Karditsa exhibited by far the lowest mean yield value 1967.788 kg/ha (
Supplementary Table S23B). Thus, Karditsa constituted a separate homogeneous subset, based on Tukey HSD, while Aitoloakarnania and Xanthi constituted the second one (
Supplementary Table S23B). As for varieties, the only statistically significant difference was observed when comparing the variety Burley 21E with NC297 (
p = 0.007) (
Supplementary Table S24A). Thus, the corresponding Tukey homogeneous subsets exhibited great overlap (
Supplementary Table S24B).
By evaluating the pairwise interactions (
Table 7), it was found that the only interaction that was found to be statistically significant was between the cultivation year and area (
p = 0.007). The corresponding plots, where the mean yield is displayed for all combinations of the factors’ categories are presented in
Figure 5A–C, respectively. In
Figure 5A, it is shown that the interaction between area and variety is mild. The different varieties follow the same pattern across the three areas with the exception of the yield mean value that is observed in Aitoloakarnania for the variety Burley 21E, which appears to be much lower than in the remaining varieties (see also
Supplementary Table S19). In
Figure 5B, it is visually shown how area and cultivation year interact, in particular, the mean yield value in Aitoloakarnania during 2016 (3163.317 kg/ha,
Supplementary Table S20) was much lower than expected in case no interaction was present.
The results of the Pearson correlation coefficient values among the yield of B type varieties, and the nitrates, sugars, and nicotine were computed and are displayed in
Table 8. It is shown that the value of the Pearson correlation coefficient exhibited great variation. For example, within the factor area, it was equal to −0.622 (
p = 0.006) between the yield and the nitrates in Aitoloakarnania, while it was almost zero (−0.057,
p = 0.824) in Karditsa. Within the cultivation year, it was found that the yield and the nicotine were negatively linearly correlated in 2016 (−0.608,
p = 0.036), while they were positively linearly correlated in 2014 (0.710,
p = 0.010). The strongest positive linear correlation was obtained between the yield and the nitrates within the variety VE9 (0.859,
p = 0.029). On the other hand, the strongest negative linear correlation was obtained between the yield and the sugars within the variety Burley 21E (−0.841,
p = 0.036).
In
Table 9, the results of the three-Factor ANOVA concerning the % nicotine content of B type varieties are presented. It was found that two of the factors were statistically significant as main effects (Cultivation year:
p = 0.025, and Area:
p = 0.043). The corresponding results of the post hoc analysis are shown in the
Supplementary Materials (Supplementary Tables S28 and S29). In the case of cultivation year, statistically significant differences in nicotine were only observed between 2014 and 2016 (
p = 0.022) (
Supplementary Table S28A). In the case of area, only two areas were assessed (Aitoloakarnania and Karditsa), thus post hoc analysis was not performed. Concerning variety, no statistically significant results were obtained (
Supplementary Table S29).
Regarding pairwise interactions, it was found that only cultivation year and area exhibited significant interaction (
p = 0.002,
Table 9). This is clearly shown in the corresponding
Figure 6B, with the year 2016 exhibiting different value pattern across areas compared to 2014 and 2015. Particularly, during 2016 in Karditsa, nicotine assumed its highest mean value 1.892% (
Supplementary Table S26).
The results of the ANOVA concerning the sugars content (%) of B-type varieties are shown in
Table 10. It was found that two factors were statistically significant as main effects (Cultivation year:
p = 0.014, and Variety:
p < 0.001). The results of the post hoc analysis regarding the main effects are shown in the
Supplementary Materials (Supplementary Tables S33 and S34). Regarding the cultivation year, statistically significant differences in the sugars were observed between 2015, and both 2014 and 2016 (
p = 0.030, and
p = 0.021, respectively) (
Supplementary Table S33A). The year 2015 exhibited larger mean sugars value (10.445%) compared to both other years and was, thus, discerned from them, constituting a separate Tukey HSD subset in itself (
Supplementary Table S33B). In the case of area, since only two areas were assessed, post hoc analysis was not performed. Concerning variety, statistically significant differences were observed in ten cases, (see
Supplementary Table S34A). As far as the pairwise interactions of the three factors are concerned (
Table 10), it was found that the area and both variety, and cultivation year exhibited significant results (
p = 0.008, and
p = 0.006, respectively), as it is also shown in
Figure 7A,B.