Complete Mitogenomes of Deep-Sea Eels Histiobranchus bathybius and Simenchelys parasitica and a New Record of H. bathybius from the East Mariana Basin, Western Pacific Ocean
Abstract
:1. Introduction
2. Materials and Methods
2.1. Specimen Collection, Genomic DNA Extraction, and Sequencing
2.2. Phylogenetic Analysis
3. Results and Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Gene | Location | Length (bp) | Strand | Start Codon | Stop Codon | Intergenic Region * |
---|---|---|---|---|---|---|
tRNA-Phe | 1–70 | 70 | + | - | ||
s-rRNA | 71–1024 | 954 | + | 0 | ||
tRNA-Val | 1025–1094 | 70 | + | 0 | ||
l-rRNA | 1133–2808 | 1676 | + | −62 | ||
tRNA-Leu | 2809–2883 | 75 | + | 0 | ||
ND1 | 2884–3852 | 969 | + | ATG | TAA | 0 |
tRNA-Ile | 3862–3931 | 70 | + | 9 | ||
tRNA-Gln | 3931–4001 | 71 | − | −1 | ||
tRNA-Met | 4001–4069 | 69 | + | −1 | ||
ND2 | 4070–5116 | 1047 | + | ATG | TAG | 0 |
tRNA-Trp | 5115–5184 | 70 | + | −2 | ||
tRNA-Ala | 5187–5255 | 69 | − | 2 | ||
tRNA-Asn | 5257–5329 | 73 | − | 1 | ||
tRNA-Cys | 5367–5431 | 65 | − | 37 | ||
tRNA-Tyr | 5432–5502 | 71 | − | 0 | ||
COX1 | 5504–7078 | 1575 | + | GTG | TAA | 1 |
tRNA-Ser | 7087–7157 | 71 | − | 8 | ||
tRNA-Asp | 7163–7232 | 70 | + | 5 | ||
COX2 | 7239–7929 | 691 | + | ATG | T-- | 6 |
tRNA-Lys | 7930–8004 | 75 | + | 0 | ||
ATP8 | 8006–8173 | 168 | + | ATG | TAA | 1 |
ATP6 | 8164–8847 | 684 | + | ATG | TAA | −10 |
COX3 | 8847–9632 | 786 | + | ATG | TAA | −1 |
tRNA-Gly | 9632–9703 | 72 | + | −1 | ||
ND3 | 9704–10,054 | 351 | + | ATG | TAG | 0 |
tRNA-Arg | 10,053–10,122 | 70 | + | 0 | ||
ND4L | 10,123–10,419 | 297 | + | ATG | TAA | −2 |
ND4 | 10,413–11,793 | 1381 | + | ATG | T-- | 0 |
tRNA-His | 11,794–11,862 | 69 | + | 0 | ||
tRNA-Ser | 11,863–11,931 | 69 | + | 0 | ||
tRNA-Leu | 11,932–12,004 | 73 | + | 0 | ||
ND5 | 12,005–13,846 | 1842 | + | ATG | TAA | 0 |
ND6 | 13,843–14,364 | 522 | − | ATG | TAG | −4 |
tRNA-Glu | 14,365–14,433 | 69 | − | 0 | ||
CYTB | 14,438–15,577 | 1140 | + | ATG | TAG | 6 |
tRNA-Thr | 15,580–15,652 | 73 | + | 4 | ||
tRNA-Pro | 15,658–15,727 | 70 | − | 5 |
Gene | Location | Length (bp) | Strand | Start Codon | Stop Codon | Intergenic Region * |
---|---|---|---|---|---|---|
tRNA-Phe | 1–70 | 70 | + | - | ||
s-rRNA | 71–1023 | 953 | + | 0 | ||
tRNA-Val | 1024–1093 | 70 | + | 0 | ||
l-rRNA | 1094–2806 | 1713 | + | 0 | ||
tRNA-Leu | 2807–2881 | 75 | + | 0 | ||
ND1 | 2882–3850 | 969 | + | ATG | TAA | 0 |
tRNA-Ile | 3860–3928 | 69 | + | 9 | ||
tRNA-Gln | 3928–3998 | 71 | − | −1 | ||
tRNA-Met | 3998–4066 | 69 | + | −1 | ||
ND2 | 4067–5113 | 1047 | + | ATG | TAG | 0 |
tRNA-Trp | 5112–5183 | 72 | + | −2 | ||
tRNA-Ala | 5186–5254 | 69 | − | 2 | ||
tRNA-Asn | 5256–5328 | 73 | − | 1 | ||
tRNA-Cys | 5366–5430 | 65 | − | 37 | ||
tRNA-Tyr | 5431–5501 | 71 | − | 0 | ||
COX1 | 5503–7077 | 1575 | + | GTG | TAA | 1 |
tRNA-Ser | 7086–7156 | 71 | − | 8 | ||
tRNA-Asp | 7162–7231 | 70 | + | 5 | ||
COX2 | 7238–7928 | 691 | + | ATG | T-- | 5 |
tRNA-Lys | 7929–8003 | 75 | + | 6 | ||
ATP8 | 8005–8172 | 168 | + | ATG | TAA | 0 |
ATP6 | 8163–8846 | 684 | + | ATG | TAA | 1 |
COX3 | 8846–9631 | 786 | + | ATG | TAA | −10 |
tRNA-Gly | 9631–9702 | 72 | + | −1 | ||
ND3 | 9703–10,053 | 351 | + | ATG | TAG | −1 |
tRNA-Arg | 10,052–10,121 | 70 | + | 0 | ||
ND4L | 10,122–10,418 | 297 | + | ATG | TAA | −2 |
ND4 | 10,412–11,792 | 1381 | + | ATG | T-- | 0 |
tRNA-His | 11,793–11,861 | 69 | + | −7 | ||
tRNA-Ser | 11,862–11,930 | 69 | + | 0 | ||
tRNA-Leu | 11,931–12,003 | 73 | + | 0 | ||
ND5 | 12,004–13,845 | 1842 | + | ATG | TAA | 0 |
ND6 | 13,842–14,363 | 522 | − | ATG | TAA | 0 |
tRNA-Glu | 14,364–14,432 | 69 | − | −4 | ||
CYTB | 14,437–15,576 | 1140 | + | ATG | TAG | 0 |
tRNA-Thr | 15,579–15,651 | 73 | + | 4 | ||
tRNA-Pro | 15,656–15,725 | 70 | − | 2 |
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Han, J.; Kim, H.-J.; Kim, B.-J.; Hyeon, J.-Y.; Noh, C.H.; Choi, Y.-U. Complete Mitogenomes of Deep-Sea Eels Histiobranchus bathybius and Simenchelys parasitica and a New Record of H. bathybius from the East Mariana Basin, Western Pacific Ocean. J. Mar. Sci. Eng. 2024, 12, 1427. https://doi.org/10.3390/jmse12081427
Han J, Kim H-J, Kim B-J, Hyeon J-Y, Noh CH, Choi Y-U. Complete Mitogenomes of Deep-Sea Eels Histiobranchus bathybius and Simenchelys parasitica and a New Record of H. bathybius from the East Mariana Basin, Western Pacific Ocean. Journal of Marine Science and Engineering. 2024; 12(8):1427. https://doi.org/10.3390/jmse12081427
Chicago/Turabian StyleHan, Jeonghoon, Han-Jun Kim, Byung-Jik Kim, Ji-Yeon Hyeon, Choong Hwan Noh, and Young-Ung Choi. 2024. "Complete Mitogenomes of Deep-Sea Eels Histiobranchus bathybius and Simenchelys parasitica and a New Record of H. bathybius from the East Mariana Basin, Western Pacific Ocean" Journal of Marine Science and Engineering 12, no. 8: 1427. https://doi.org/10.3390/jmse12081427