New Frontiers for the Early Diagnosis of Cancer: Screening miRNAs Through the Lateral Flow Assay Method
Abstract
:1. Introduction
2. Colorimetric LFA: A Traditional Approach Applied to Detection of miRNA as a Cancer Biomarker
2.1. GNPs Exploited as Colorimetric Label for Visual Detection
Method Principle | Lateral Flow Assay | Key Strengths | Weaknesses and Areas Needing Improvement | Biomarker | LOD | Ref. |
---|---|---|---|---|---|---|
Combination of rolling circle amplification and GNP-based LFA for multiplex detection of miRNA. | Two DNA-based probes (one immobilized on the test line, one labeled with GNPs) form a sandwich structure with RCA products. | Multiplex strategy, only one capturing probe was needed | Amplification step is required | miR-let-7a miR-21 | 20 pM (miR-let-7a) and 40 pM (miR-21) | [40] |
The RCA amplification was initiated by DNAzyme, which specifically recognized and cleaved the target analyte in the presence of Mg2+. A padlock DNA, designed using one of the cleaved strands of m5C-miRNA-21 as the primer, facilitated the RCA reaction driven by T4 ligase and DNA polymerase. | The resulting RCA products were then cleaved into repeating nucleic acid fragments using a nicking endonuclease. These fragments were subsequently applied to an LFA strip, where they formed complexes with GNP–DNA probes. These complexes hybridized with bio-ssDNA-1 immobilized on the test line. | High specificity due to DNAzyme triggered RCA reaction | Amplification step is required | m5C-miRNA-21 | 0.1 pM | [45] |
Multiplex detection of miRNAs obtained by coupling reverse transcription using a stem-loop primer with DNA barcode-based LFA. | PCR primers with a DNA barcode sequence were designed to hybridize to capture DNA immobilized on the nitrocellulose membrane. | Multiplex detection of exosomal miRNAs exploiting DNA barcode technology | Amplification step is required | miR-92a and miR-141 | Not reported | [46] |
LFA based on sandwich DNA–miRNA–DNA/GNPs. | The capture probe was anchored to the test line via the interaction between biotin and streptavidin. The detection probe, labeled with GNPs, was preloaded onto the conjugate pad. In the presence of the target, it bound to both the detection and capture probes, forming a sandwich-like structure. This assay functioned without the need for an amplification step. | The biosensor was applied to cell lysate directly without complex sample treatment | Improvements in the sensitivity could be achieved using HRP–GNP dual labels and the detection of mismatched miRNA | miR-215 | 60 pM | [47] |
Multiplex approach based on sandwich-type hybridization reactions without the use of an amplification step. | Sandwich-type hybridization reactions to produce ssDNA–miRNA–ssDNA/GNP complexes, which were captured and visualized in the test zones. | Multiplex approach, no amplification step required | Further work could improve the sensitivity and test the biosensor in serum samples from patient and healthy controls | miR-21, miR-155, and miR-210 | 0.007 nM (miRNA-155), 0.068 nM (miRNA-21), 0.017 nM (miRNA-210) | [48] |
Duplex-specific nuclease (DSN)-mediated signal amplification combined with dual-AND logic gate-based signal output for the detection of four miRNAs. | During the amplification step, the target analytes were labeled with biotin, digoxin, FAM, and TAMRA, which were captured by their respective antibodies immobilized on the test lines. | Multiplex approach based on logic gate method | Amplification step is required | miR-223 miR-210 miR205 miR-155 | 26.51 fM | [49] |
Universal LFA exploiting antibodies instead of DNA-based probes combined with reverse transcription polymerase chain reaction (RT-PCR) and GNPs as labels. | During the RT-PCR process, the target analytes were biotinylated. The GNPs on the conjugate pad were linked to anti-biotin antibodies, which recognized the amplification products. Meanwhile, detection probes complementary to a portion of the amplification products were immobilized on the test lines, conjugated to beads. | Multiplex approach; the approach is based on the use of antibodies as probe to obtain a universal tool easily adaptable to the detection of other miRNAs | Amplification step is required; in the future, detection could be applied to miRNAs with single-base variations | miR-21 and miR-let-7a | 102–103 copies (miR-21), 102–104 copies (miR-let-7a) | [51] |
Combination of RCA and LFA based on the use of biospecific proteins for recognizing amplification products. | During the RCA step, the target analytes were labeled with biotin and a fluorescent dye. Upon introducing the amplification products onto the LFA strip, they bound to anti-FITC antibodies conjugated with GNPs on the conjugate pad. These complexes were subsequently captured by streptavidin immobilized on the test lines. | Multiplex approach, the test was applied to samples from real patients | Amplification step is required | miR-135b and miR-21 | 0.1 nM | [52] |
Biotin–MB–GNPs were designed to regulate the accessibility of the biotin group based on the presence of an miRNA target, enabling interaction with streptavidin immobilized on the test line. | When the target miRNA was present, the MB, attached to GNP and biotin at opposite ends, underwent a structural change, allowing the biotin to bind to streptavidin on the test line. | The use of an MB as a probe makes the assay less sensitive to the experimental condition, which is particularly important in the case of short targets such as miRNA | The approach could be extended to the detection of other miRNAs by tuning the sequence of the MB | miR-21 | 115 pM | [53] |
A universal GNP DNA conjugate was hybridized through the base stacking hybridization (BSH) phenomenon to bind a specific MB on the test line. | GNPs served as labels for complementary detection probes designed to recognize the target analytes. These complexes were subsequently captured by the MB immobilized on the test lines. | Multiplex assays were developed with a unique GNP–DNA probe | Signal improvement methods (i.e., biotinylation of capture DNAs, application of affinity proteins, utilization of HRPs at the surface of GNPs) could be applied | miR-210 and miR-424 | 10 pmol for both miRNAs | [54] |
The amplification step involves a system consisting of an MB probe, an assistant probe, and an endonuclease to enhance the analytical signal. | In the presence of the target miRNA, a Y-shaped junction structure is formed through the hybridization of three nucleic acid strands, which is recognized by the endonuclease. The MB probe is cleaved by the endonuclease, generating two new DNA fragments. The regenerated assistant probe and target miRNA then hybridize with another MB probe, entering a new cycle of amplification. Through this process, the initial miRNA is converted into two DNA fragments, which can be detected using the LFA approach. Two test lines are designed to detect each DNA fragment produced during amplification. GNPs are conjugated to specific DNA sequences, and DNA capture probes are immobilized on the test lines, forming a sandwich-like structure in the presence of the target analyte. | The enhancement ability of endonuclease-assisted target recycling amplification allows signal translation and amplification | Amplification step is required | miR-16 | 0.1 pM | [55] |
Combination of the LFA technique with an amplification step based on the self-primer exponential amplification reaction (SPEXPAR). | The colorimetric LFA was designed to detect amplification products labeled with a fluorescent dye (FAM). GNPs were conjugated with anti-FAM antibodies to form a complex, which was subsequently recognized by the DNA probe immobilized on the test line. | The biosensor was applied to human serum samples with good recoveries | Amplification step is required | miR-155 | 100 pM | [56] |
Before LFA-based analysis, an amplification step was performed combining DNS and HCR approaches. | The amplification products were conjugated to both biotin and FAM. During the LFA-based analysis, the amplification products bound to GNPs conjugated with streptavidin, forming a visible complex. This complex was detected on the test line, where anti-FAM antibodies were immobilized. | Dual signal amplification increases sensitivity and lowers the limit of detection | Amplification step is required | miR-21 | 2.1 fM | [57] |
Hairpin 1, modified with biotin, was immobilized on GNPs. Due to the hairpin structure, the biotin molecule on the H1 probe is in close proximity to the GNPs, preventing the probe from being captured by streptavidin on the LFA strip. In the presence of microRNA-21 and Hairpin 2 (H2), CHA amplification is triggered on the GNPs, producing multiple double-stranded DNA molecules that expose biotin on their surface. | Streptavidin is immobilized on the test line to capture the biotin exposed on the GNPs. The availability of biotin on the GNP surface is dependent on the presence of the target analyte. | The novelty is related to the on-particle CHA enzyme-free signal amplification combined with the LFA platform | GNP modification takes a long time, and the method is not applicable in blood plasma | miR-21 | 0.89 pM | [58] |
The integration of a tetrahedral probe and a catalytic hairpin assembly involves labeling DNA tetrahedrons with biotin to serve as capture probes on the test line. The catalytic hairpin assembly system consists of two hairpin sequences that form double-stranded products through an assembly reaction triggered by the target analyte. | The hybridized products, containing barcoded tetrahedra that utilize complementary sequences, bind to streptavidin-modified GNPs via biotin and are captured on the test line, where streptavidin is immobilized. | The novelty is related to the strategy for fabricating a strip-sensing interface based on the DNA tetrahedron structure for solving the restrictions for tethering nucleic acid probes with protein to avoid self-movement | Amplification step is required | miR-150-5p | 58.90 fM | [59] |
2.2. Improving Sensitivity of LFA Visual Detection by Enhancing the GNP Analytical Signal
2.3. Enzymatic Activity and G-Quadruplex Horseradish Peroxidase-Mimicking DNAzyme for Colorimetric Ultrasensitive Detection
Method Principle | Lateral Flow Assay | Biomarker | Lable | Key Strengths | Weaknesses and Areas Needing Improvement | LOD | Ref. |
---|---|---|---|---|---|---|---|
The detection utilized a sandwich approach, where the capture probe on the test line recognized the target analyte bound to a detection probe labeled with AuPt NFs. | A single-stranded DNA probe complementary to the target miRNA-21 was conjugated with AuPt NFs, serving as the detection probe. AuPt NFs functioned as both colored labels for visual detection, indicated by the formation of a black band when the target analyte was present, and as catalytic labels enabling quantitative analysis. The catalytic activity of the label was activated by adding a chromogenic substrate, generating the detectable signal. | miR-21 | AuPt NFs | AuPt NFs were used both as colored and catalytic labels | The biosensor should be tested on real samples | 0.3 pM | [75] |
miRNAs served as the input to initiate the cyclic strand displacement reaction (SDR), producing a significant enrichment of Au@PtNPs. These nanoparticles enabled dual detection outputs. First, the grayish-brown color of Au@PtNPs provided a visual signal for miRNA detection via LFA (output 1). Second, the Au@PtNPs catalyzed the decomposition of H2O2, generating gas pressure measured using a digital handheld gas pressure meter (output 2). | During the SDR process, the target miRNA bound to biotin, and the detection probe conjugated with Au@PtNPs. As the complex flowed across the LFA membrane, it was captured on the test line by streptavidin. | miR-21 | Au@PtNP | The novelty is related to the dual-mode logic gates based on gas pressure biosensing and LFA. Both color and gas pressure readouts were obtained | Amplification step is required | 7.2 pM | [76] |
The GNP-silica nanorod label was used to amplify the visual analytical signal. | A single-stranded DNA probe was labeled with gold nanoparticle–silica nanorods through a self-assembly process, and the resulting DNA–gold nanoparticle–silica nanorod conjugate served as the detection probe. The gold nanoparticle–silica nanorods were captured on the test line through sandwich-type hybridization reactions, generating characteristic color bands that enabled the visual detection of miRNA. | miR-215 | GNP-silica nanorod | No complex sample treatment is needed | The method should be applied to detect miRNA in cell lysate and biological fluids | 10 pM | [37] |
Four functional oligonucleotides with complementary sequences were combined to form DNA-AuNA, which incorporated additional GNPs to enhance sensitivity. | In the sandwich approach, the detection probe linked to AuNA binds to the target analyte, and the resulting complex is captured by a complementary sequence immobilized on the test line. | TK1-miRNA | Gold nanoaggregate | Smartphone was used as detector | Low sensitivity of the visual assay | 0.36 pM | [79] |
HRP was used as a tracer and immobilized on the surface of GNPs, along with a detection DNA sequence complementary to the target analyte. | When miRNA-224 was present, the complex formed by the target analyte and detection probe was captured on the test line, where a complementary sequence to the target analyte was immobilized. Upon adding the 3,3,5,5-tetramethylbenzidine enzymatic substrate (TMB/H2O2), blue products were generated, enabling sensitive detection of the analyte of interest. | miR-224 | HRP | Double detection | The biosensor could be applied for the detection of mismatched miRNA and multiplex miRNA in aqueous solutions and human fluids | 7.5 pM | [20] |
The combination of HCR and RCA was used to generate G-quadruplex structures, which could catalyze a colorimetric reaction in the presence of hemin. | When the target, miR-31, was present, it facilitated the formation of a sandwich structure on the surface of magnetic beads. This complex then triggered a cascade amplification reaction between hybridization chain reaction (HCR) and rolling-circle amplification (RCA), resulting in the formation of G-quadruplex structures. These structures, when combined with hemin, formed a hemin/G-quadruplex HRP-mimicking DNAzyme (H/G-HRP mimic enzyme), which was captured on the test line. The enzyme catalyzed the oxidation of chromogenic substrates, generating a colorimetric signal on the strip. | miR-31 | G-quadruplex HRP-mimicking DNAzyme | High sensitivity due to the G-quadruplex structure approach for obtaining colorimetric detection | Amplification step is required | 3.21 fM | [85] |
The CRISPR/Cas13a system was integrated with MnO2 nanozyme in the design of an LFA biosensing strategy. | When the target bound to crRNA, the cleavage activity of Cas13a was activated, which unlocked the sequence and initiated strand displacement, leading to signal amplification and the production of a new sequence, P1. Upon applying the reaction solution to the LFA strip, P1 facilitated the capture of MnO2 nanosheets on the test line. These nanosheets then catalyzed the oxidation of the pre-immobilized colorless substrate 3,3′,5,5′-tetramethylbenzidine (TMB), resulting in the generation of a blue-green product. | miR-21 | MnO2 nanosheets | The dual signal amplification mechanisms (CRISPR/Cas13a-mediated cleavage and the MnO2 NSs-catalyzed chromogenic reaction) increase sensitivity | Before the analysis with LFA, an incubation step at 37 °C is required | 0.33 pM | [86] |
3. Innovative Detection Approaches Combined with LFA Technology for miRNA Detection
Method Principle | Lateral Flow Assay | Biomarker | Label | Key Strengths | Weaknesses and Areas Needing Improvement | LOD | Ref. |
---|---|---|---|---|---|---|---|
The SERS–LFA biosensor is combined with CHA signal amplification. | The detection of the target miRNA was performed by allowing two hairpin DNAs to self-assemble into double-stranded DNA, exposing biotin molecules on the surface of Au–AgNSs. The SERS complexes were then captured on the T-line, enabling the generation of SERS signals. | miR-196a-5p and miR-31-5p | Au–Ag nanoshuttles | Multiplex approach tested in human serum | The detection step required the acquisition of spectra, and the detector should be equipped with an excitation source | 1.171 nM (miR-196a-5p) 2.251 nM (miR-31-5p) | [38] |
SERS–LFA biosensor combined with CHA signal amplification. | In the presence of the target, two hairpin DNAs self-assemble into double-stranded DNA, exposing the biotin molecules modified with an SERS tag on the surface. | miR-106b and miR-196b | palladium (Pd)–gold (Au) core–shell nanorods | Pd–AuNRs were easily synthesized on a large scale, and this label allowed very strong SERS signals | The detection step required the acquisition of spectra, and the detector should be equipped with an excitation source | 23.17 aM (miR-106b) 46.94 aM (miR-196b) | [92] |
The Au@Si nanocomposite label was used to amplify the visual detectability and to obtain the formation of SERS signals. | The assay relied on a sandwich-like structure, where the label bound to detection probes complementary to the target analyte. This complex was then captured on the test line, where a complementary DNA sequence was immobilized. | miR-21 | Au@Si | No complex sample treatment is needed | The method could be applied for multiplex assay, and it should be tested in serum samples from patients and healthy controls | 1 pM | [93] |
Combination of RCA and FL-LFA. | The amplified products of the target miRNA and the FM–probe conjugates formed complexes that traveled along the LFA membrane. These complexes were then specifically captured by the probes immobilized on the T-line, and a positive green fluorescence signal was obtained using the smartphone-based strip reader. | miRNA 21 and miRNA let-7a as low as | Fluorescent microspheres | Smartphone-based strip reader was successfully designed and fabricated for measuring the fluorescence signals | Amplification step is required | 230.60 pM (miRNA 21) 27.89 pM (miRNA let-7a) | [103] |
Amplification-free LFA based on Janus nanomotors powered by NIR irradiation. | Au nanorods and periodic mesoporous organosilica microspheres (AuNR/PMO JNMs) were utilized to develop nanomotors functioning as “swimming probes.” These AuNR/PMO JNMs were conjugated with custom-designed DNA recognition probes. Under NIR irradiation, the AuNRs generate asymmetric thermal gradients around the JNMs, inducing thermophoretic motion. This active movement enhances the recognition of miRNA-21 targets, thereby improving capture efficiency. | miR21 | AuNR/PMO JNMs | The active movement accelerated the recognition of the target | The processes were divided into the hybridization step (which required irradiation by NIR light for 10 min) and strip detection procedure (which required recording the thermal signals at the T-line under excitation of NIR light for 1 min by an electronic thermometer) | 18 fmol/L | [107] |
Photothermal approach based on the use of bimetallic particles as tracers for simultaneously obtaining visual and quantitative information using a smartphone as a detector. | The detection probes were based on Pd–Au bimetallic nanoplates, which exhibit photothermal properties and are conjugated to a specific sequence for binding the target analyte. These probes were pre-loaded onto the conjugate pad. The capture probe, designed to recognize miR-21, utilized the biotin–streptavidin interaction for immobilization on the T-line. Upon formation of the sandwich structure in the presence of the target analyte, both visual and thermal detection were achieved using a smartphone equipped with an external thermal imager and a portable laser for irradiating the conjugate probes. | miR-21 | Pd-Au nanoplates | The biosensor achieved single-base mismatch discrimination and could quantify signals in various cell lysates | The equipment is quite complex because a laser is needed to irradiate the test line, and the thermal image is captured by the smartphone with an external thermal imager | 0.094 pM | [108] |
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Emamiamin, A.; Shariati Pour, S.R.; Serra, T.; Calabria, D.; Varone, M.; Di Nardo, F.; Guardigli, M.; Anfossi, L.; Baggiani, C.; Zangheri, M.; et al. New Frontiers for the Early Diagnosis of Cancer: Screening miRNAs Through the Lateral Flow Assay Method. Biosensors 2025, 15, 238. https://doi.org/10.3390/bios15040238
Emamiamin A, Shariati Pour SR, Serra T, Calabria D, Varone M, Di Nardo F, Guardigli M, Anfossi L, Baggiani C, Zangheri M, et al. New Frontiers for the Early Diagnosis of Cancer: Screening miRNAs Through the Lateral Flow Assay Method. Biosensors. 2025; 15(4):238. https://doi.org/10.3390/bios15040238
Chicago/Turabian StyleEmamiamin, Afsaneh, Seyedeh Rojin Shariati Pour, Thea Serra, Donato Calabria, Marta Varone, Fabio Di Nardo, Massimo Guardigli, Laura Anfossi, Claudio Baggiani, Martina Zangheri, and et al. 2025. "New Frontiers for the Early Diagnosis of Cancer: Screening miRNAs Through the Lateral Flow Assay Method" Biosensors 15, no. 4: 238. https://doi.org/10.3390/bios15040238
APA StyleEmamiamin, A., Shariati Pour, S. R., Serra, T., Calabria, D., Varone, M., Di Nardo, F., Guardigli, M., Anfossi, L., Baggiani, C., Zangheri, M., & Mirasoli, M. (2025). New Frontiers for the Early Diagnosis of Cancer: Screening miRNAs Through the Lateral Flow Assay Method. Biosensors, 15(4), 238. https://doi.org/10.3390/bios15040238