Parkinson’s Disease Detection Using Hybrid LSTM-GRU Deep Learning Model
Abstract
:1. Introduction
- To balance the highly imbalanced Parkinson’s disease dataset, this study adopted undersampling and oversampling techniques to accurately detect the disease in its early stages. Moreover, with these techniques, the problem of model overfitting is solved and performance increases.
- A hybrid LSTM-GRU model is proposed that automatically detects the PD in time. In addition, the performance of single models and hybrid models is also investigated and compared to evaluate the proposed model results.
- The true positive rate (TPR) and the false positive rate (FPR) are calculated and displayed against one another on the ROC curve for different threshold values to assess the performance of hybrid models.
- The comparison of different sampling techniques with hybrid models and other state-of-the-art studies is explored.
2. Literature Review
State-of-the-Art DL Models
Methods | Sampling | Advantages | Drawbacks |
---|---|---|---|
CNN+LSTM [20] | - | Early detection of Parkinson’s disease was essential for its prevention. DL techniques have been used to detect PD in limited time. | There is no particular cure for PD, but the impact can be reduced through early detection and the right medication. |
DNN [24] | - | A deep neural network with 42 preprocessed voice recordings was used for the prediction of Parkinson’s disease. | Their approach attained only 81% accuracy and does not used any augmentation technique. |
BiLSTM [25] | - | They utilized dynamic features of speech for Parkinson’s disease detection using BiLSTM model. | The results achieved are not very accurate. |
CNN [26] | - | CNN with a 13-layer architecture was developed by the authors to accurately predict the disease in 40 patients. Moreover, their approach was implemented for clinical practice. | The results were not accurate, and the 13-layer design was very expensive. |
RNN [21] | SMOTE | The authors employed three DL methods for the prediction of Parkinson’s disease with extensive preprocessing techniques. An oversampling SMOTE technique was deployed to enhance the model results. | They do not describe whether they used oversampling on the whole dataset or only for training. |
CNN-LSTM [31] | - | They used CNN for feature extraction and LSTM for prediction. The main objective of this study is to detect Parkinson’s disease. | Authors first used CNN model to extract relevant features from the voices and then employed LSTM for prediction that leads to high computation cost. |
CNN [32] | Oversampling | The authors utilised explainable DL architecture for disease detection in PD datasets. In order to improve the overall detection results, they also increased the number of data samples by utilising oversampling methods. | Few features are selected from the entire dataset, resulting in an overfitting issue. |
ResNet [27] | Augmentation | This study used a modified version of the ResNet model to predict disease using the PD dataset. The authors used augmentation to balance the class samples because the dataset only comprises small samples of audio recordings. | This study utilized augmentation on test set to increase the results but score is not good for the accurate detection of Parkinson’s disease. |
Proposed Method | Random oversampling and SMOTE | The authors employed various Dl models with extensive preprocessing, scaling and sampling techniques that enhanced the overall results. The proposed LSTM+GRU model attained superior results compared to previous models. It detected Parkinson’s disease in its early stage with the help of hybrid Dl models. | This study has a limited dataset, which is a drawback and leaves space for others to do more research. |
3. Proposed Methodology
3.1. Parkinson’s Disease Dataset
3.2. Extract Features and Sampling Methods
Algorithm 1 Proposed Methodology for Parkinson’s disease detection |
Input: Parkinson’s disease Dataset |
Output: PD or Healthy |
Start: |
|
End |
3.3. Data Splitting
3.4. Proposed Hybrid Model
3.5. Performance Metrics
- True Positive (TP): positive cases, correctly identified.
- True Negative (TN): negative cases, correctly identified.
- False Negative (FN): cases in which a negative result is predicted incorrectly.
- False Positive (FP):cases in which a positive result is predicted incorrectly.
4. Results and Discussion
4.1. Performance of DL Models Using Different Sampling Techniques
4.2. Performance of Hybrid Models Using Different Sampling Techniques on % (70:30) Dataset
4.3. ROC Curves
4.4. Comparison Results of Hybrid Models Using Different Sampling Techniques
4.5. Comparative Results of Proposed Hyrbrid Model with the State-of-the-Art Studies
4.6. Discussion and Limitations
5. Conclusions
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Name and Features | Description of Features |
---|---|
MDVP; Fo (Hz) | [Average Vocal Fundamental Frequency] |
MDVP; Fhi (Hz | [Maximum Vocal Fundamental Frequency] |
MDVP; Flo (Hz) | [Minimum Vocal Fundamental Frequency] |
MDVP; Jitter (%) | [Several Measures of Variation in Fundamental Frequency, Kay pentax multi-dimensional voice program as (%)] |
MDVP; Jitter (Abs) | [Kay pentax Multi-dimensional voice program Absolute in Microseconds] |
MDVP; RAP | [Kay pentax Multi-dimensional voice program relative amplitude perturbation] |
MDVP; PPQ | [Kay pentax Multi-dimensional voice program Five point period perturbation] |
Jitter; DDP | [Difference of differences between Cycles and period] |
MDVP; Shimmer, | [Kay pentax Multi-dimensional voice program shimmer local] |
MDVP; Shimmer (dB) | [Kay pentax Multi-dimensional voice program shimmer in decibel’s] |
Shimmer; APQ3 | [Kay pentax Multi-dimensional voice program amplitude perturbation quotient with three points] |
MDVP; APQ | [Eleven point Kay pentax Multi-dimensional voice program amplitude perturbation quotient] |
Shimmer; APQ5 | [Five point Kay pentax Multi-dimensional voice program amplitude perturbation quotient] |
Shimmer; DDA | [Difference of differences between amplitude and period] |
NHR, HNR | [Noise to harmonic ratio, Harmonic to noise ratio] |
Status | [Healthy (0) and Parkinson’s disease (1)] |
RPDE | [Re-currence period density Entropy] |
DFA | [Detrended fluctuation analysis] |
spread1, spread2, PPE | [Pitch period Entropy, the fundamental frequency can be quantified in three nonlinear ways]. |
Model | Class | Accuracy Score | Precision Score | Recall Score | F1 Score |
---|---|---|---|---|---|
NN | PD | 0.87 | 0.80 | 0.57 | 0.67 |
Healthy | 0.91 | 0.97 | 0.94 | ||
LSTM | PD | 0.89 | 0.80 | 0.57 | 0.67 |
Healthy | 0.91 | 0.97 | 0.94 | ||
BILSTM | PD | 0.92 | 0.83 | 0.71 | 0.77 |
Healthy | 0.94 | 0.97 | 0.92 | ||
GRU | PD | 0.92 | 0.83 | 0.71 | 0.77 |
Healthy | 0.94 | 0.97 | 0.95 |
Model | Class | Accuracy Score | Precision Score | Recall Score | F1 Score |
---|---|---|---|---|---|
NN | PD | 0.98 | 0.97 | 1.00 | 0.98 |
Healthy | 1.00 | 0.97 | 0.98 | ||
LSTM | PD | 0.97 | 0.97 | 0.97 | 0.97 |
Healthy | 0.96 | 0.96 | 0.96 | ||
BILSTM | PD | 0.97 | 0.94 | 1.00 | 0.97 |
Healthy | 1.00 | 0.93 | 0.96 | ||
GRU | PD | 0.93 | 0.91 | 0.97 | 0.94 |
Healthy | 0.96 | 0.89 | 0.92 |
Model | Class | Accuracy Score | Precision Score | Recall Score | F1 Score |
---|---|---|---|---|---|
NN | PD | 0.98 | 1.00 | 0.97 | 0.98 |
Healthy | 0.97 | 1.00 | 0.98 | ||
LSTM | PD | 0.97 | 0.94 | 1.00 | 0.97 |
Healthy | 1.00 | 0.93 | 0.96 | ||
BILSTM | PD | 0.90 | 0.91 | 0.91 | 0.91 |
Healthy | 0.89 | 0.89 | 0.89 | ||
GRU | PD | 0.95 | 0.94 | 0.97 | 0.95 |
Healthy | 0.96 | 0.93 | 0.94 |
Original Dataset | Balanced Dataset (With Random Oversampling Technique) | ||||||||
---|---|---|---|---|---|---|---|---|---|
Model | Class | Accuracy | Precision | Recall | F1 Score | Accuracy | Precision | Recall | F1 Score |
LSTM+GRU | PD | 0.95 | 0.95 | 0.92 | 0.96 | 0.98 | 0.96 | 1.00 | 0.98 |
Healthy | 0.94 | 0.91 | 0.95 | 1.00 | 0.95 | 0.97 | |||
BILSTM+GRU | PD | 0.93 | 0.92 | 0.93 | 0.93 | 0.98 | 0.98 | 0.98 | 0.98 |
Healthy | 0.93 | 0.92 | 0.92 | 0.98 | 0.98 | 0.98 | |||
LSTM+BILSTM | PD | 0.91 | 0.91 | 0.92 | 0.91 | 0.94 | 0.93 | 0.95 | 0.94 |
Healthy | 0.91 | 0.93 | 0.92 | 0.96 | 0.95 | 0.94 | |||
Balanced Dataset (With Random Undersampling Technique) | Balanced Dataset (With SMOTE Oversampling Technique) | ||||||||
LSTM+GRU | PD | 0.96 | 1.00 | 0.93 | 0.96 | 0.98 | 0.98 | 0.98 | 0.98 |
Healthy | 0.94 | 1.00 | 0.97 | 0.98 | 0.98 | 0.98 | |||
BILSTM+GRU | PD | 0.93 | 0.93 | 0.93 | 0.93 | 0.96 | 0.93 | 0.97 | 0.95 |
Healthy | 0.93 | 0.93 | 0.93 | 0.98 | 0.94 | 0.96 | |||
LSTM+BILSTM | PD | 0.93 | 0.93 | 0.93 | 0.93 | 0.94 | 0.90 | 0.97 | 0.94 |
Healthy | 0.93 | 0.93 | 0.93 | 0.98 | 0.92 | 0.95 |
Original Dataset | Balanced Dataset (With Random Oversampling Technique) | ||||||||
---|---|---|---|---|---|---|---|---|---|
Model | Class | Accuracy | Precision | Recall | F1 Score | Accuracy | Precision | Recall | F1 Score |
LSTM+GRU | PD | 0.95 | 1.00 | 0.71 | 0.83 | 1.00 | 1.00 | 1.00 | 1.00 |
Healthy | 0.94 | 1.00 | 0.97 | 1.00 | 1.00 | 1.00 | |||
BILSTM+GRU | PD | 0.92 | 0.83 | 0.71 | 0.77 | 1.00 | 1.00 | 1.00 | 1.00 |
Healthy | 0.94 | 0.97 | 0.95 | 1.00 | 1.00 | 1.00 | |||
LSTM+BILSTM | PD | 0.92 | 0.83 | 0.71 | 0.77 | 0.95 | 0.91 | 1.00 | 0.95 |
Healthy | 0.94 | 0.97 | 0.95 | 1.00 | 0.90 | 0.95 | |||
Balanced Dataset (With Random Undersampling Technique) | Balanced Dataset (With SMOTE Oversampling Technique) | ||||||||
LSTM+GRU | PD | 0.95 | 0.92 | 1.00 | 0.96 | 0.98 | 1.00 | 0.97 | 0.98 |
Healthy | 1.00 | 0.89 | 0.94 | 0.97 | 1.00 | 0.98 | |||
BILSTM+GRU | PD | 0.95 | 0.92 | 1.00 | 0.96 | 0.98 | 1.00 | 0.97 | 0.98 |
Healthy | 1.00 | 0.89 | 0.94 | 0.97 | 1.00 | 0.98 | |||
LSTM+BILSTM | PD | 0.90 | 0.91 | 0.91 | 0.91 | 0.97 | 1.00 | 0.93 | 0.97 |
Healthy | 0.89 | 0.89 | 0.89 | 0.94 | 1.00 | 0.97 |
Original Dataset | Balanced Dataset (With Random Oversampling Technique) | ||||||||
---|---|---|---|---|---|---|---|---|---|
Model | Class | Accuracy | Precision | Recall | F1 Score | Accuracy | Precision | Recall | F1 Score |
LSTM+GRU | PD | 0.94 | 1.00 | 0.79 | 0.86 | 0.98 | 0.97 | 0.97 | 0.98 |
Healthy | 0.91 | 0.97 | 0.93 | 0.96 | 1.00 | 0.96 | |||
BILSTM+GRU | PD | 0.91 | 0.87 | 0.74 | 0.72 | 0.97 | 0.94 | 0.97 | 0.97 |
Healthy | 0.90 | 0.95 | 0.92 | 0.97 | 0.93 | 0.97 | |||
LSTM+BILSTM | PD | 0.90 | 0.83 | 0.75 | 0.88 | 0.95 | 0.96 | 0.97 | 0.95 |
Healthy | 0.91 | 0.97 | 0.92 | 0.96 | 0.95 | 0.96 | |||
Balanced Dataset (With Random Undersampling Technique) | Balanced Dataset (With SMOTE Oversampling Technique) | ||||||||
LSTM+GRU | PD | 0.95 | 1.00 | 0.90 | 0.95 | 0.97 | 0.97 | 1.00 | 0.98 |
Healthy | 0.91 | 1.00 | 0.95 | 1.00 | 0.96 | 0.98 | |||
BILSTM+GRU | PD | 0.95 | 0.92 | 1.00 | 0.96 | 0.97 | 0.97 | 0.97 | 0.98 |
Healthy | 1.00 | 0.89 | 0.94 | 0.96 | 0.95 | 0.96 | |||
LSTM+BILSTM | PD | 0.91 | 0.91 | 0.91 | 0.91 | 0.96 | 0.96 | 0.97 | 0.96 |
Healthy | 0.89 | 0.89 | 0.89 | 0.96 | 0.95 | 0.96 |
Random Oversampling | SMOTE | ||
---|---|---|---|
Model | Time consumption | Model | Time consumption |
LSTM | 110 s | LSTM | 120 s |
GRU | 135 s | GRU | 150 s |
BILSTM | 140 s | BILSTM | 130 s |
LSTM+GRU | 150 s | LSTM+GRU | 170 s |
BILSTM+GRU | 165 s | BILSTM+GRU | 185 s |
LSTM+BILSTM | 211 s | LSTM+BILSTM | 203 s |
Authors | Dataset | Model | Accuracy |
---|---|---|---|
Grover et al. [24] | 42 patients | DNN | 81% |
Quan et al. [25] | 45 patients | RNN | 84% |
Oh et al. [26] | 20 patients | CNN | 88% |
Wodzinski et al. [27] | 100 patients | ResNet | 90% |
Abdullah et al. [39] | - | CNN | 95% |
Yasir et al. [30] | 80 patients | ANN | 95% |
Caliskan et al. [23] | 31 patients | DNN | 94% |
Yasir et al. | 80 patients | ANN | 95% |
Our Study | 31 patients | Hybrid LSTM+GRU | 98% |
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Rehman, A.; Saba, T.; Mujahid, M.; Alamri, F.S.; ElHakim, N. Parkinson’s Disease Detection Using Hybrid LSTM-GRU Deep Learning Model. Electronics 2023, 12, 2856. https://doi.org/10.3390/electronics12132856
Rehman A, Saba T, Mujahid M, Alamri FS, ElHakim N. Parkinson’s Disease Detection Using Hybrid LSTM-GRU Deep Learning Model. Electronics. 2023; 12(13):2856. https://doi.org/10.3390/electronics12132856
Chicago/Turabian StyleRehman, Amjad, Tanzila Saba, Muhammad Mujahid, Faten S. Alamri, and Narmine ElHakim. 2023. "Parkinson’s Disease Detection Using Hybrid LSTM-GRU Deep Learning Model" Electronics 12, no. 13: 2856. https://doi.org/10.3390/electronics12132856
APA StyleRehman, A., Saba, T., Mujahid, M., Alamri, F. S., & ElHakim, N. (2023). Parkinson’s Disease Detection Using Hybrid LSTM-GRU Deep Learning Model. Electronics, 12(13), 2856. https://doi.org/10.3390/electronics12132856