Automatic Sleep Disorders Classification Using Ensemble of Bagged Tree Based on Sleep Quality Features
Abstract
:1. Introduction
2. Related Works
- As mentioned above, different from most current ECG-based automatic sleep stage systems that applied a 5-minute epoch to observe the main frequency band of ECG signal, we perform a new pre-processing technique that suitable for 30-seconds epoch without detecting QRS. We take advantage that the proposed method more efficiently to be implemented in an embedded hardware device as a consideration of the complexity requirements and computational cost.
- A set of efficient ECG signal features (normalized LF and HF) is extracted by analyzing the HRV frequency band of Power Spectrum Density (PSD) using a Hanning window with the welch method, which is then used to identify the sleep stages.
- All sleep stage conditions are observed to patients and non-patients subjects. It is an essential factor for a robust sleep stage system.
- Since the proposed method present an effective and efficient in classifying sleep disorders of the elderly, we expect this method could be used as a general framework in modeling sleep disorders and become a fundamental model for future research. Moreover, we expect that our proposed method can contribute to the ICSD-3 study and aim as a new alternative for diagnosing the sleep disorders, besides using the questionnaire-based method, such as PSQI, BIQ, and RBDSQ.
3. Materials and Proposed Methods
3.1. Data Description
3.2. Pre-processing
- Removing the noise using a combination of the band-stop filter and moving average filter.
- Applying the simple R-peak detector using a 70% threshold from the maximum amplitude of the ECG signal to detect the R-peaks location and use it as a threshold.
- Interpolating the R-R intervals in the time domain using a cubic spline and re-sampled it at 2.5 Hz. A time-series signal should be re-sampled using frequency sampling at least two-times of the considered maximal frequency. It aims to estimate the HRV spectral (maximum HF band power is 0.4 Hz) for satisfying the Nyquist-Shannon sampling theorem.
3.3. Spectral Features Extraction
3.4. Sleep Stage Detection
3.5. Assessment of Sleep Quality
- TIB is the total investigation time or the total in-bed duration (in minutes). TIB has a clinical significance for diagnosing sufficient sleep.
- TST is the total sleep duration or total non-wake conditions (in minutes). TST has a relation for diagnosing the effects of medications, sleep deprivation, and medical condition.
- SOL is the duration time from the wake condition until getting the first non-wake condition (in minutes). SOL represents sleep time habits.
- SE is the ratio of total sleep duration (TST) and the total in-bed duration (TIB) (in percentage). In normal sleep conditions, it should at least 85% of TIB. SE represents how well the subject slept.
- The percentage of wakefulness stage is used to measures awake condition.
- The percentage of light sleep stage is associated with the transition between being awake and asleep. The increasing percentages of light sleep indicate the patient has a sleep disorder. Typically, the percentage of light sleep is around 55% of the total sleep duration for normal sleep conditions.
- The percentage of deep sleep stage is associated with the rebound sleep and side effect of medications. SDB disorders are indicated by increasing the percentages of deep sleep [46]. The normal percentage of deep sleep is around 20% of total sleep for normal sleep conditions.
- The percentage of the REM sleep stage is sensitive to the effect of medications and sleep deprivation. Nevertheless, the REM sleep stage remains approximately 25% of the total sleep in normal sleep conditions. The increasing percentages of the REM sleep indicate a recovery of sleep deprivation.
3.6. Classification of Sleep Disorders
4. Results and Discussion
4.1. Experimental Result
- The longest duration of SOL for SDB patients was below 36.5 min It corresponds to a clinical study that estimated the average longest duration of SDB patients was around 9.5 min [58], and we obtained below 36.5 min.
- The percentage of wakefulness was above 17.505%.
- The longest percentage of REM was below 15.68%. It corresponds to a clinical study that estimated the prevalence percentage of REM in the SDB patients (such as OSA patients) was around 13.5% [59], and we obtained below 15.68%.
- The longest duration of SOL for RBD patients was below 36.5 min. It corresponds to a related clinical study that estimated the average duration of SOL in 8 RBD patients was around 11.1 min [60], and we obtained below 36.5 min.
- The percentage of wakefulness was above 17.505%.
- The longest percentage of REM was above 15.68%. It corresponds to a related clinical study that estimated the characteristics percentage of REM in 94 RBD patients was around 22.4% [42], and we obtained above 15.68%.
- The duration of TIB and the percentage of wakefulness were generated simultaneously. Thus, the RBD patient is the subject that has the duration of TIB above 125.25 min and the percentage of wakefulness above 18.11%. It corresponds to a clinical study that estimated the average duration of TIB in 4 RBD patients is around 452.75 min [41], and we obtained above 125.25 min. In addition, [57] evaluated that healthy subjects have an average percentage of wakefulness around 10.55%, and we obtained below 17.505% and 18.11%.
4.2. Implementation Planning
5. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
Abbreviations
AASM | American Academy of Sleep Medicine |
AHI | Apnea–Hypopnea Index |
ANOVA | Analysis of Variance |
ANS | Autonomic Nervous System |
BIQ | Brief Insomnia Questionnaire |
CAP | Cyclic Alternating Pattern |
CART | Classification and Regression Trees |
DT | Decision Tree |
DTB-SVM | Decision-Tree-Based Support Vector Machine |
ECG | Electrocardiography |
EEG | Electroencephalogram |
ELS | Ensemble Learning Systems |
EMG | Electromyogram |
EOG | Electrooculogram |
FFT | Fast Fourier Transform |
FN | False-Negative |
FP | False-Positive |
HF | High Frequency |
HRV | Heart Rate Variability |
ICSD | International Classification of Sleep disorders |
LF | Low Frequency |
NN | Neural Network |
NREM | Non Rapid Eye Movement |
OSA | Obstructive Sleep Apnea |
PCA | Principal Component Analysis |
PLMS | Periodic Leg Movement of Sleep |
PLS | Partial Least Squares |
PSD | Power Spectrum Density |
PSG | Polysomnography |
PSQI | Pittsburgh Sleep Quality Index |
R&K | Rechtschaffen & Kales |
RBD | REM Behavior Disorder |
RBDSQ | REM Sleep Behavior Disorder Screening Questionnaire |
REM | Rapid Eye Movement |
RLS | Restless Leg Syndrome |
RMSSD | Standard Derivation of NN Intervals |
RSWA | REM Sleep Without Atonia |
SDB | sleep-Disordered Breathing |
SDNN | Standard Derivation of NN Intervals |
SE | Sleep Efficiency |
SOL | Sleep Onset Latency |
SVM | Support Vector Machine |
TIB | Total Time in Bed |
TN | True Negative |
TP | True Positive |
TSP | Total Spectral Power |
TST | Total Sleep Time |
VLF | Very Low Frequency |
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Subject | Sleep Stage | |||
---|---|---|---|---|
Wakefulness | Light Sleep | Deep Sleep | REM Sleep | |
Healthy | 400 | 2080 | 1185 | 1067 |
(8.45%) | (43.95%) | (25.05%) | (22.55%) | |
Insomnia | 1114 | 1227 | 437 | 411 |
(34.93%) | (38.48%) | (13.71%) | (12.88%) | |
SDB | 196 | 473 | 231 | 65 |
(20.31%) | (49.02%) | (23.94%) | (6.73%) | |
RBD | 1322 | 2084 | 1330 | 878 |
(23.55%) | (37.12%) | (23.69%) | (16.64%) |
Features | Insomnia | SDB | RBD |
---|---|---|---|
[39] | [40,41] | [41,42] | |
Total Time in Bed (min) | Decrease | Decrease | Decrease |
Total Sleep Time (min) | Decrease | Decrease | Decrease |
Sleep Onset Latency (min) | Increase | Increase | Increase |
Sleep Efficiency (%) | Decrease | Decrease | Decrease |
Wakefulness (%) | Increase | Increase | Increase |
Light sleep (%) | Increase | Increase | Increase |
Deep sleep (%) | Decrease | Increase | Decrease |
REM sleep (%) | Decrease | Decrease | Decrease |
Automatic Scoring | |||||
---|---|---|---|---|---|
Wakefulness | Light Sleep | Deep Sleep | REM Sleep | ||
wakefulness | 238 | 155 | 0 | 0 | |
PSG | light sleep | 120 | 1873 | 0 | 0 |
Scoring | deep sleep | 0 | 0 | 1185 | 0 |
REM sleep | 0 | 0 | 169 | 894 |
Automatic Scoring | |||||
---|---|---|---|---|---|
Wakefulness | Light Sleep | Deep Sleep | REM Sleep | ||
wakefulness | 893 | 6 | 35 | 0 | |
PSG | light sleep | 0 | 1145 | 0 | 0 |
Scoring | deep sleep | 19 | 3 | 432 | 0 |
REM sleep | 0 | 7 | 0 | 321 |
Automatic Scoring | |||||
---|---|---|---|---|---|
Wakefulness | Light Sleep | Deep Sleep | REM Sleep | ||
wakefulness | 1372 | 0 | 0 | 0 | |
PSG | light sleep | 0 | 2329 | 0 | 0 |
Scoring | deep sleep | 0 | 0 | 1418 | 20 |
REM sleep | 51 | 1 | 15 | 898 |
Automatic Scoring | |||||
---|---|---|---|---|---|
Wakefulness | Light Sleep | Deep Sleep | REM Sleep | ||
PSG Scoring | wakefulness | 332 | 0 | 0 | 0 |
light sleep | 0 | 620 | 0 | 0 | |
deep sleep | 0 | 0 | 324 | 41 | |
REM sleep | 0 | 0 | 106 | 31 |
Healthy | Insomnia | SDB | RBD | p Value | |
---|---|---|---|---|---|
TIB | 0.000016 | ||||
TST | 0.75 | ||||
SOL | 0.000011 | ||||
SE | 0.00083 | ||||
% Wakefulness | 0.0000017 | ||||
% Light sleep | 0.23 | ||||
% Deep sleep | 0.19 | ||||
% REM sleep | 0.00000046 |
Automatic Scoring | |||||
---|---|---|---|---|---|
Healthy | Insomnia | SDB | RBD | ||
Healthy | 13 | 0 | 0 | 3 | |
PSG | Insomnia | 0 | 8 | 0 | 1 |
Scoring | SDB | 0 | 0 | 3 | 1 |
RBD | 2 | 0 | 0 | 20 |
Sensitivity (%) | Specificity (%) | Accuracy (%) | Cohen’s Kappa (%) | |
---|---|---|---|---|
Healthy | 81.25 | 93.94 | 89.80 | 0.71 |
Insomnia | 88.89 | 100.00 | 97.78 | 0.71 |
SDB | 75.00 | 100.00 | 97.78 | 0.60 |
RBD | 90.91 | 82.76 | 86.27 | 0.73 |
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Widasari, E.R.; Tanno, K.; Tamura, H. Automatic Sleep Disorders Classification Using Ensemble of Bagged Tree Based on Sleep Quality Features. Electronics 2020, 9, 512. https://doi.org/10.3390/electronics9030512
Widasari ER, Tanno K, Tamura H. Automatic Sleep Disorders Classification Using Ensemble of Bagged Tree Based on Sleep Quality Features. Electronics. 2020; 9(3):512. https://doi.org/10.3390/electronics9030512
Chicago/Turabian StyleWidasari, Edita Rosana, Koichi Tanno, and Hiroki Tamura. 2020. "Automatic Sleep Disorders Classification Using Ensemble of Bagged Tree Based on Sleep Quality Features" Electronics 9, no. 3: 512. https://doi.org/10.3390/electronics9030512
APA StyleWidasari, E. R., Tanno, K., & Tamura, H. (2020). Automatic Sleep Disorders Classification Using Ensemble of Bagged Tree Based on Sleep Quality Features. Electronics, 9(3), 512. https://doi.org/10.3390/electronics9030512