1. Introduction
Comprehensive research focused on the Environmental Scanning Electron Microscope (ESEM) is presented in this paper. ESEM allows for the observation of non-conductive, semiconducting, and native [
1,
2,
3] samples without causing damage. This research is currently being conducted by a team led by Vilém Neděla at the Institute of Scientific Instruments of the Czech Academy of Sciences in collaboration with the Department of Electrical and Electronic Technology, Faculty of Electrical Engineering and Communication, Brno University of Technology. This research employs a modern approach that combines the physical theory specific to the problem with several modern types of technologies [
4,
5]. This involves a combination of physical theory, CFD simulations, modern experimental sensing techniques, and advanced technologies for quality control and precision of manufactured key components of the experimental setup [
6,
7]. In this particular case, electron microscopy was used. One aspect of this research involves investigating supersonic flow through an aperture equipped with a nozzle under low-pressure conditions at the boundary of continuum mechanics. This phenomenon is particularly relevant to the differentially pumped chamber component of the ESEM [
8,
9,
10], which utilizes an aperture to separate two regions with a significant pressure gradient in the range of approximately 2000 Pa to 70 Pa.
The pioneer of differential pumping technology is Dr. Danilatos [
11]. In his research, he focuses on the influence of nozzle geometry on system performance without an aperture. He finds that a wider nozzle opening improves electron beam transmission but can compromise the vacuum system’s pressure differential. A thinner nozzle facilitates electron beam passage but may be less effective in maintaining optimal vacuum conditions [
12]. Danilatos further optimized electron beam transmission by analyzing gas density distribution [
13]. He concluded that a thin nozzle reduces the pressure barrier for the electron beam. He then provided fundamental insights into the variations of density and pressure in gas flow through a small aperture separating chambers with a significant pressure difference. Using a ThermoFisher electron microscope, Danilatos investigated the impact of aperture size and controlled back pressure on gas flow [
14].
Dr. Danilatos employs a fine-tuned Monte Carlo system, utilizing statistical methods for his computations. In our previous work [
15], we conversely refined the Ansys Fluent system, which utilizes the continuum mechanics method based on the Stokes–Navier equations. This refinement was achieved through a comparison with Dr. Danilatos’s model from his publication of identical pressure ratios under which Dr. Danilatos performed his analysis and which are analogous to our present research.
Based on the aforementioned experience and prior research [
16], the density-based model was employed, utilizing an implicit scheme, second- and third-order discretization variants, and the SST-omega turbulence model. This specific model refinement will be subsequently discussed in greater detail.
The subsequent methodological approach employed in this study utilized CFD simulations in conjunction with experimental measurements and the theoretical framework pertaining to the physical problem under investigation. A series of experimental measurements were conducted on the fabricated experimental chamber to determine the pressure ratios along the nozzle wall. These results were subsequently used to refine the CFD analyses. The refined CFD system was then applied to achieve the objective of this analysis, which was to investigate the influence of nozzle surface roughness variations on the distribution of oblique shock waves and, consequently, on the static pressure profile along the flow axis, a factor that significantly affects electron beam scattering.
The analysis of differences in flow patterns induced by nozzle roughness on the boundary layer [
17], and consequently, the characteristics of shock waves, is examined in this paper. These shock waves have a significant impact on the scattering of the primary electron beam as it passes through the differentially pumped chamber, ultimately affecting the sharpness of the resulting image.
Computational Fluid Dynamics (CFD) calculations play a pivotal role in the description and analysis of supersonic flow phenomena. Specifically, they are instrumental in analyzing the distribution of shock waves, which induce abrupt changes in pressure, temperature, and density. CFD simulations facilitate a detailed investigation of shock wave formation and propagation, including their interaction with object surfaces, as will be elucidated in this paper. Consequently, CFD is frequently employed in the design and optimization of supersonic nozzles utilized in rocket engines and other related applications. These simulations enable the analysis of flow dynamics within the nozzle and the optimization of its geometry to achieve desired output flow parameters. In the present study, the objective is to minimize the axial flow pressure to reduce electron beam scattering [
17,
18,
19,
20].
However, under the operating conditions of this microscope, we are operating at the boundary of continuum mechanics in low-pressure environments. At this boundary, the ratio of inertial forces to viscous forces is significantly different [
21,
22]. This has a marked impact on the shaping of shock waves and their intensity [
23]. In low-pressure conditions, inertial forces are significantly lower due to the reduced density. Conversely, viscous forces are largely independent of pressure up to approximately 133 Pa and do not decrease with decreasing pressure. This research is conducted using a versatile experimental chamber.
2. Experimental Chamber
This chamber is constructed from multiple components, allowing for modularity in design (e.g., nozzle shape) [
24]. In particular, the chamber can be customized with various measurement devices and sensors. These sensors will primarily be used for pressure and temperature sensing. The experimental chamber is designed for the investigation of supersonic flow under significant pressure differentials between two chambers separated by an aperture and a nozzle, simulating the flow between the specimen chamber and the differentially pumped chamber.
The experimental chamber consists of a chamber V1, which simulates the specimen chamber in an ESEM, and a chamber V2, simulating the conditions of a differentially pumped chamber in a real ESEM (
Figure 1a). These chambers are separated by a small-diameter aperture fitted with a nozzle (
Figure 1b). The modular design of the chamber allows for variations in the size and shape of both the aperture and the nozzle.
Additionally, the chamber is equipped with two windows, allowing for the observation of the region of interest and the visualization of shock waves using optical methods in vacuum [
25,
26,
27].
Figure 1a presents a photograph of the chamber in conjunction with a 2D axisymmetric model (
Figure 1b) on which the aforementioned CFD analyses were conducted using the Ansys Fluent system version 2024 R2.
Prior to the implementation of the 2D axisymmetric model, an analysis of the model was conducted and it was determined that the 3D effects were negligible. Subsequently, a verification simulation was performed for one variant within the 3D model, and the results were found to be consistent. Consequently, all subsequent simulations were carried out using 2D axisymmetric models. The analysis demonstrated a concordance of results while achieving a computational time reduction of up to an order of magnitude.
Two-dimensional models require significantly less computational resources than their 3D counterparts. Consequently, computational convergence is expedited and hardware demands are reduced. In complex simulations that necessitate numerous iterations or the analysis of a multitude of design variants, the utilization of 2D models facilitates substantial savings in both time and computational resources.
Given the inherent 2D nature of the system, the utilization of 2D models facilitates the deployment of a less complex mesh, thereby mitigating the risk of generating elements of suboptimal quality. This approach, in turn, reduces computational demands and curtails the potential for errors arising from compromised element integrity.
The aperture part with the nozzle is designed so that the nozzle is fitted with six spirally arranged holes on its surface. These holes can be equipped with pressure sensors to obtain the pressure distribution on the nozzle surface (
Figure 2). The spiral arrangement of the holes is chosen to minimize their influence on the flow within the nozzle.
As mentioned, the CFD analyses were conducted on a 2D axisymmetric model. This 2D calculation within the Ansys Fluent system must be performed with the flow axis aligned with the X-axis. Consequently, the model needs to be rotated 90° clockwise, as illustrated in
Figure 3. This figure also presents the fundamental dimensions of the CFD model, which correspond to the internal dimensions of the chamber. Moreover, the same figure displays an enlarged detail of the aperture fitted with the nozzle, including the specified dimensions and the indicated measurement points (
Figure 2).
The nozzle dimensions were adjusted in CFD model to match those of the actual manufactured nozzle within the specified tolerance (
Figure 3). The dimensions of the manufactured nozzle were analyzed using the VEGA3 Tescan (Brno, Czech Republic) optical microscope (
Figure 4). Subsequently, CFD analyses were conducted using these dimensions of the actual manufactured nozzle. The residues visible in
Figure 4 were cleaned up.
Figure 5 presents a 2D axisymmetric model for CFD analysis, including a description of the boundary conditions. Two variants with very similar pressure gradients were analyzed. The first variant was tuned for atmospheric conditions:
p01 = 1,013,250 Pa:
pv1 = 101,325 Pa (hereafter referred to as the ATM variant). The second comparative variant was designed for conditions close to the continuum mechanics limit:
p02 = 13,947 Pa:
pv2 = 1158 Pa (hereafter referred to as the 1158 Pa variant). As previously mentioned, chamber V1 denotes the chamber behind the aperture, while V2 represents the chamber into which the gas flows through the aperture and nozzle.
3. Methodology
The methodology employed in this paper is based on a combination of experimental measurements and CFD analyses [
28,
29]. The experimental measurements consisted of a series of strategically placed pressure sensors. The CFD analyses were performed using the Ansys Fluent system, employing the finite volume method within the framework of continuum mechanics [
30].
Initially, a CFD analysis was performed using Ansys Fluent system. Based on the predicted pressures at the pressure measurement points on the nozzle wall, differential pressure sensors were selected. These sensors were chosen with the narrowest possible measurement ranges to achieve the highest measurement accuracy [
31].
Figure 6 presents a schematic diagram of the experimental chamber, illustrating the schematic arrangement of the pressure sensors (the dimensions are not proportional). Point AV1 was measured using an absolute pressure sensor, the Pfeiffer CMR 361, with a range of 110 kPa and an accuracy of ±0.2% of the measured value. Point AV2 was measured using an absolute pressure sensor, the Pfeiffer CMR 362, with a range of 11 kPa and an accuracy of ±0.2% of the measured value. The differential pressure between points Z and 1 was measured using a DPS 300 sensor with a range of 100 kPa and an accuracy of ±1% FSO BFSL (over the entire range fitted with a linear curve). The differential pressure between points 1 and 2 was measured using a DPS 300 sensor with a range of 25 kPa and an accuracy of ±1% FSO BFSL (over the entire range fitted with a linear curve). The differential pressure between points 2 and 3 was measured using a DPS 300 sensor with a range of 4kPa and an accuracy of ±1% FSO BFSL (over the entire range fitted with a linear curve). The differential pressure between points 3 and 4 was measured using a DPS 300 sensor with a range of 400 Pa and an accuracy of ±1% FSO BFSL (over the entire range fitted with a linear curve). The differential pressure between points 4–5, 5–6, 6–A, and A–K was measured using a DPS 300 sensor with a range of 160 Pa and an accuracy of ±1% FSO BFSL (over the entire range fitted with a linear curve).
Subsequently, experimental pressure measurements were conducted on the nozzle surface. This was carried out using pressure sensors installed in the experimental chamber configured for the 1158 Pa variant. The measurement setup is depicted in
Figure 6. The experimental data were then validated against the results obtained from the CFD analyses, leading to the fine-tuning of the Ansys Fluent model.
Due to the high compressibility of supersonic flow, it is imperative to employ models that account for density variations within the flow field. The Ansys system utilizes two fundamental models with the provision for further customization.
The pressure-based coupled solver, which simultaneously solves the momentum and continuity equations, updates the pressure and velocity fields concurrently at each iteration. Conversely, the density-based solver is designed to accurately model density variations, thus solving the continuity, momentum, and energy equations in their compressible forms. It predominantly employs “implicit” solution methods, which exhibit enhanced stability for compressible flows characterized by shock waves.
When selecting among the given solvers, the decisive criterion is not so much the magnitude of velocity, but rather the consideration of inertial effects in cases where the coupling between the momentum and energy equations is strongly nonlinear. These nonlinearities influence the resulting behavior. While the pressure-based solver suppresses inertial effects and linearizes the coupling between the momentum and energy equations, the density-based solver has an advantage in this regard. The selection should be made based on whether these effects need to be included in the analysis.
In simplified terms, when simulating shock waves and analyzing the influence of inertial effects, a pressure-based solver can be employed up to a flow velocity of 0.3 Mach. If these effects are not required to be included, the pressure-based solver can yield satisfactory results for compressible fluids, even at flow velocities of 3 Mach.
For the aforementioned reasons, the density-based solver was chosen as the most suitable option due to the complex flow dynamics within the nozzle. This solver simultaneously solves the density-based equations for continuity, momentum, energy, and substance transport, while other scalar equations are solved sequentially.
To handle the intricate flow patterns, an implicit linearization approach was used for solving the conjugate equations. This method linearizes each equation implicitly with respect to all dependent variables. The pooled implicit approach, which solves all variables across cells simultaneously, proved to be stable and effective for handling the complex supersonic flow conditions and significant pressure differentials encountered in the experiments.
Due to the supersonic nature of the flow, the equation of friction dissipation was included in the energy equation.
For the numerical scheme, we chose AUSM (Advection Upstream Splitting Method) [
32]. This advanced method formulates convective and compressive flows using the eigenvalues of the Jacobian flow matrices. The AUSM scheme offers several advantages:
Accurate representation of shock and contact discontinuities.
Entropy-conserving solutions.
Elimination of the “carbuncle” phenomenon, a numerical instability often seen in low-dissipative techniques.
Consistent accuracy and convergence rates across all Mach numbers.
The AUSM scheme demonstrates applicability across a broad spectrum of Mach numbers, encompassing both low subsonic and high supersonic velocities. AUSM is capable of delivering accurate results even in subsonic regimes, where alternative numerical discretization methods are frequently susceptible to numerical errors. Furthermore, it exhibits robust behavior in the transonic region, where flow transitions from subsonic to supersonic. For supersonic velocities, AUSM is designed to accurately capture shock waves and other discontinuities encountered at elevated Mach numbers. Consequently, AUSM proves to be a suitable choice for supersonic and hypersonic flow simulations.
The AUSM scheme minimizes numerical dissipation, resulting in enhanced accuracy, particularly in flows exhibiting sharp gradients, and demonstrates robust shock-capturing capabilities, which are crucial for supersonic and hypersonic flow simulations.
To transfer data between cells, we used a second-order upwind scheme. This scheme utilizes a technique called ‘multivariate linear reconstruction’ to calculate values on cell surfaces. It essentially takes the cell-centered data and uses mathematical expansion (similar to a Taylor series) to create a more accurate representation of the values at the cell faces [
33,
34,
35]. This approach helped us to capture the dynamic flow changes during pumping and produced results that closely matched our experimental measurements. Since a precise mathematical analysis was also crucial, we carefully designed the mesh beforehand [
36,
37].
A structured mesh combined with a 2D variant of hexagonal elements was used, offering advantages such as reduced artifacts from transmitting results over oblique edges and a minimized cell count for purely rectangular regions (
Figure 7a). Triangular elements were employed in areas where a structured mesh was impractical, notably in narrow sections like the nozzle aperture and regions with anticipated supersonic flow behind the nozzle. Particular attention was paid to modeling a sufficiently fine boundary layer in this aperture and nozzle [
38].
Figure 7b illustrates an expansion of the rectangular area (
Figure 7a). The zoomed-in portion highlights the pre-planned refinement. Manual adaptive refinement was also implemented during the calculation process using the Field Variable method according to the pressure gradient. Refinement was performed in regions where oblique and normal shock waves were formed [
39].
Ansys Fluent employs unstructured mesh (specifically, triangular elements in 2D) for adaptive refinement, primarily due to the mesh’s inherent flexibility. In adaptive refinement procedures, localized mesh modifications are necessitated based on computational results, a process that can be exceedingly complex with structured meshes. Unstructured meshes facilitate a more straightforward and automated refinement process in regions characterized by steep gradients, such as shock waves or turbulent flows.
The range of mesh adaptation was determined based on the maximum values of the gradient of pressure in the cells. The maximum refinement level was set to 4 to accurately capture pressure gradients in the supersonic flow regions within the nozzle. A grid independence study was conducted. Manual mesh adaptation was applied across the pressure range, with a refinement level of 2 used in areas with minimal variable changes. Areas preceding the aperture within the nozzle and in the gas expansion zone were refined to a maximum level of 4. Throughout the calculation process, the monitoring setup in Ansys Fluent remained unchanged. Global parameters such as Absolute Pressure, Static Temperature, Velocity, and Density were continuously monitored. Parameter Points were established at specific locations: within the aperture throat and at five points spaced 2 mm apart in the direction of gas flow above the aperture. The subsequent evaluations of quantities, as detailed later in the paper, exhibited consistency. The grid independence analysis confirmed that the mesh resolution was adequate for the type of analysis conducted.
The CFD results were subsequently utilized to verify the boundary layer conditions by examining the
y+ value [
40,
41]. The initial cell size near the wall, especially in the boundary layer of the aperture and nozzle, was critical for creating the mesh. The SST k-ω turbulence model was employed, assuming a
y+ value between 0 and 1. The size of the first cell next to the wall can be calculated using Equation (1).
where
y+ is dimensionless quantity that represents the distance from the wall within the boundary layer, scaled according to the flow characteristics,
μ is dynamic viscosity, and
Uτ is frictional velocity.
The k-ω turbulence model used does not have a built-in mathematical wall function model. This means that the
y+ value must be less than 1. To accurately represent the boundary layer, the mesh needs to be fine enough in this area, and the first cell near the wall should be small [
42].
The dynamic viscosity, which changes based on the gas temperature T, is calculated using Equation (2) [
43] and verified according to [
44]. This is especially important in supersonic flow where viscosity changes significantly.
The frictional velocity
Uτ is determined from Equation (3):
where
is wall shear stress determined from Equation (4):
where
Umax is maximal gas flow velocity in the flow axis, and
Cf is skin friction coefficient.
The skin friction coefficient is a dimensionless number that measures how much friction a flowing fluid exerts on a surface compared to its dynamic pressure. It is calculated using Equation (5):
where
is Reynold number obtained from Equation (6):
where
D is characteristic dimension of internal solved space and
Umid is mean flow velocity.
The mean flow velocity
Umid in the cross-section of the given nozzle was determined from Equation (7):
These relationships were subsequently utilized in the evaluation of individual calculation variants.
The
y+ value was verified according to the theory described above. The required maximum size of the first cell at the wall was determined at two locations: the aperture throat (purple point) and the nozzle outlet (yellow point) (
Figure 8).
Table 1 shows the results of the first cell size
y in the given points. The remaining quantities presented in
Table 1 were obtained from CFD analyses conducted using Ansys Fluent.
The mesh was constructed with the careful consideration of the acquired data. The calibrated CFD model was then used to analyze the ATM variant, and the resulting flow patterns were compared to those of the 1158 Pa variant, revealing significant differences in boundary layer behavior.
A boundary layer is a thin region of fluid that forms near a solid surface when a fluid flows over it. Due to the no-slip condition, the fluid velocity at the surface is zero. The fluid velocity gradually increases with distance from the surface until it reaches the free-flow velocity. Boundary layers significantly influence drag, heat transfer, mass transfer, and turbulence. The boundary layer can be either laminar or turbulent. Laminar boundary layers exhibit smooth, orderly flow with minimal mixing between fluid layers and are typically found near the leading edge of an object or at low Reynolds numbers. Turbulent boundary layers, on the other hand, are characterized by chaotic, irregular flow, with significant mixing, and occur at higher Reynolds numbers, usually downstream of the laminar region. Boundary layer thickness is defined as the distance from the surface at which the fluid velocity reaches approximately 99% of the free-flow velocity. This thickness is influenced by factors such as flow velocity, fluid viscosity, and the length of the surface over which the fluid flows.
In electron microscopy, the interaction between the electron beam and gas molecules results in the scattering of primary electrons. The operation of electron microscopes designed for higher chamber pressures, specifically Environmental Scanning Electron Microscopes (ESEM), is predicated on the phenomenon that a portion of the electron beam retains its original trajectory even after traversing a gaseous medium.
The passage of a primary electron beam through an environment with elevated gas pressures results in collisions between the electrons and gas atoms and molecules. During these collisions, electrons may experience a partial loss of energy and a deflection from their original trajectory. When the mean number of collisions, Mi, within the gaseous environment is low, the resulting deviation of the electron from the beam’s initial path within the specimen plane is also minimal, and the electron’s path length can be approximated as equal to the thickness of the gas layer, d, through which the electron traverses. The mean number of collisions per electron can be determined from the relationship [
45].
where
σT is the total gas gripping cross-section,
P is the static pressure,
d is the thickness of the gas layer through which the electron passes,
k is the Boltzmann constant, and
T is the absolute temperature.
Regarding Mi, the following correlations exist:
For Mi less than 0.05, beam dispersion is minimal, not exceeding 5%.
Within the range of Mi from 0.05 to 3, partial beam dispersion occurs, spanning 5% to 95%.
When Mi exceeds 3, complete beam dispersion is observed, surpassing 95%.
The total gas gripping cross-section
σT is defined as the proximate vicinity surrounding a gas particle within which, should an electron traverse, a collision will occur. Consequently, the gas’s collision cross-section is dependent not only on the species of gas but also on the accelerating voltage. The accelerating voltage represents the potential difference necessary for the formation of the primary electron beam. For the nitrogen gas used and, for example, an accelerating voltage of 10 keV, the total gas gripping cross-section
σT is determined to be 2 × 10
−21 m
2, according to [
46].
Within the aforementioned relationship (Equation (8)), it is possible to influence a key variable, namely the static pressure along the primary beam’s trajectory. This contribution focuses on analyzing the impact of static pressure, along the flow axis, by varying the roughness value on the nozzle wall. As will be demonstrated subsequently, the surface roughness of the nozzle plays a significant role in controlling the static pressure along the flow axis.
The surface roughness of a nozzle, for instance, increases friction between the flowing fluid and the nozzle walls, leading to energy losses, which manifest as a reduction in static pressure. This pressure drop is more pronounced at higher flow velocities, which is the case in the presented paper. Furthermore, the surface roughness of the nozzle influences the thickness and characteristics of the boundary layer. In practice, it is crucial to minimize surface roughness during nozzle manufacturing, particularly in applications where high flow velocities and minimal pressure losses are required. However, in the application discussed in this paper, the objective is the opposite, namely, to reduce the pressure value. In this instance, it was demonstrated that the surface roughness of the nozzle affects static pressure values along the flow axis, but this effect is less significant at low pressures. This phenomenon arises from several factors: the influence of viscosity, where at low pressures, the gas viscosity becomes relatively dominant as viscosity remains independent of pressure down to 133 Pa while inertial forces decrease with decreasing pressure. Consequently, the internal friction within the gas exerts a greater influence on the flow than the friction between the gas and the nozzle wall. Although surface roughness induces turbulence and energy losses, at low pressures, this turbulence is dampened by the gas viscosity. Another contributing factor is the boundary layer, which is relatively thicker at low pressures. This thicker boundary layer mitigates the impact of surface irregularities, thereby lessening their influence on the flow. Furthermore, at low pressures, the Reynolds number is diminished, indicating a propensity for laminar flow. Laminar flow exhibits a lower sensitivity to surface roughness compared to turbulent flow.
These simulations were conducted with the boundary conditions specified in
Figure 5, and variations in wall roughness for the aperture and nozzle [
47,
48]. Surface roughness significantly influences various material properties and behaviors, such as friction, where rougher surfaces exhibit higher friction coefficients. Surface roughness is characterized by parameters, for example, like
Ra (average roughness), which is the most common parameter for describing surface geometric roughness. A lower
Ra value indicates a smoother surface.
Ra allows for the comparison of different surface finishes and ensures that they meet the specified requirements.
Ansys Fluent does not directly accept geometric roughness values (
Ra) but instead utilizes a concept known as sand-grain roughness. Therefore, conversion from
Ra to sand-grain roughness is necessary (Equation (9)). Sand-grain roughness is an empirical parameter representing surface roughness based on its impact on fluid flow. It reflects the equivalent roughness height that would induce a similar flow resistance as the actual surface. Sand-grain roughness primarily affects boundary layer development and the friction factor in turbulent flow, whereas geometric roughness can induce laminar-to-turbulent transition. Sand-grain roughness is not a direct physical measurement but is derived from experimental data by comparing the actual flow resistance of a surface to that of an idealized sand-grain rough surface. The estimation of sand-grain roughness (
ε) requires empirical or semi-empirical methods based on measured data and is performed outside of Ansys Fluent [
33,
49].
where
Ra is Average Roughness.
The Roughness Settings in the CFD Simulations were as follows:
Smooth surface (further marked as “No Roughness”);
Roughness Ra = 0.8 µm (further marked as “0.8”);
Roughness Ra = 1.6 µm (further marked as “1.6”);
Roughness Ra = 3.2 µm (further marked as “3.2”);
Roughness Ra = 6.3 µm (further marked as “6.3”).