Novel Hypertrophic Cardiomyopathy Diagnosis Index Using Deep Features and Local Directional Pattern Techniques
Abstract
:1. Introduction
- Established databanks of four-chamber US images of normal and HCM subjects;
- Created deep features by combining local texture featured images with deep neural networks; and
- Generated an integrated index to categorize normal versus HCM using a distinctive number.
2. Materials
3. Methodology
3.1. Preprocessing
3.2. Feature Generation
3.2.1. Local Directional Pattern (LDP)
3.2.2. Deep-Learning Model
3.3. Feature Selection
3.4. Classification
4. Experimental Results
Comparative Study
5. Discussion
- An integrated index based on heart US image features was developed that could effectively discriminate for HCM subjects.
- The use of a single distinct value simplified the classification and should garner early clinical adoption, especially in rural and semiurban areas where access to experienced US operators may be limited.
- The proposed framework can be generalized to image analysis of other imaging modalities and/or other anatomical regions; e.g., fundus images, brain magnetic resonance imaging, etc.
6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Features | Normal | HCM | p-Value | t-Value | ||
---|---|---|---|---|---|---|
Mean | SD | Mean | SD | |||
LDPRes870 | 1.0906 | 0.1285 | 1.7401 | 0.1585 | 5.1 × 10−65 | 28.6105 |
LDPRes1731 | 1.6194 | 0.3706 | 2.7880 | 0.3472 | 1.58 × 10−45 | 20.0121 |
LDPRes1313 | 2.121 | 0.3118 | 1.3068 | 0.2749 | 1.57 × 10−37 | 16.9102 |
LDPRes1701 | 0.8078 | 0.1347 | 0.4998 | 0.0998 | 6.62 × 10−34 | 15.5594 |
LDPRes1100 | 0.9853 | 0.1107 | 1.2622 | 0.1160 | 5.59 × 10−33 | 15.2183 |
LDPRes54 | 0.0675 | 0.0336 | 0.1584 | 0.0438 | 4.1 × 10−32 | 14.9010 |
LDPRes110 | 1.1768 | 0.2628 | 1.8776 | 0.3561 | 9.59 × 10−31 | 14.4011 |
LDPRes1351 | 0.7101 | 0.2133 | 0.3076 | 0.1133 | 7.92 × 10−29 | 13.7051 |
LDPRes223 | 0.1786 | 0.0606 | 0.0634 | 0.0351 | 1.58 × 10−28 | 13.5969 |
LDPRes770 | 2.4266 | 0.2920 | 1.8258 | 0.2951 | 4.83 × 10−26 | 12.6988 |
Parameters | RNet50 | RNet18 | ANet | DNet | GNet |
---|---|---|---|---|---|
Input image size | 224 × 224 × 3 | 224 × 224 × 3 | 227 × 227 × 3 | 256 × 256 × 3 | 224 × 224 × 3 |
No. of deep layers | 50 | 18 | 8 | 19 | 22 |
Output layer | ‘avg pool’ | ‘pool5′ | ‘pool5′ | ‘avg1′ | ‘pool5-7 × 7′ |
No. of features | 1 × 2048 | 1 × 512 | 1 × 4096 | 1 × 1000 | 1 × 1024 |
Methods | Acc. (%) | Sen. (%) | Spe. (%) | PPV (%) | F-Score |
---|---|---|---|---|---|
LDP-RNet18 | 95.12 | 98.38 | 94.05 | 91.04 | 0.9456 |
LDP-RNet50 | 100 | 100 | 100 | 100 | 1 |
LDP-ANet | 87.11 | 82.25 | 90.09 | 83.60 | 0.8291 |
LDP-DNet | 84.04 | 83.87 | 84.15 | 76.47 | 0.7999 |
LDP-GNet | 93.25 | 90.32 | 95.04 | 91.80 | 0.9105 |
Features | Normal | HCM | p-Value | t-Value | ||
---|---|---|---|---|---|---|
Mean | SD | Mean | SD | |||
LDP-RNet18 | ||||||
LDPRes492 | 0.696662 | 0.155103 | 1.216885 | 0.231307 | 2.98 × 10−38 | 17.18295 |
LDP-RNet50 | ||||||
LDPRes870 | 1.0906 | 0.1285 | 1.7401 | 0.1585 | 5.1 × 10−65 | 28.6105 |
LDP-ANet | ||||||
LDPAlex1852 | 0.194477 | 0.393206 | 1.13497 | 0.689104 | 1.31 × 10−21 | 11.09695 |
LDP-DNet | ||||||
LDPDark616 | −0.21708 | 0.421096 | −1.02086 | 0.402245 | 3.41 × 10−24 | 12.03204 |
LDP-GNet | ||||||
LDPGoogLe902 | 0.547527 | 0.457099 | 1.890254 | 0.790567 | 6.12 × 10−29 | 13.74575 |
Features Using Various Methods | Normal | HCM | |||
---|---|---|---|---|---|
Mean | SD | Mean | SD | p-Value | |
Entropy | |||||
LDPRes17 | 0.000195 | 0.001399 | 0 | 0 | 0.274759 |
Bhattacharyya | |||||
LDPRes17 | 0.000195 | 0.001399 | 0 | 0 | 0.274759 |
ROC | |||||
LDPRes28 | 0 | 0 | 0.000952 | 0.004895 | 0.052053 |
Wilcoxon | |||||
LDPRes870 | 1.090677 | 0.128562 | 1.740115 | 0.158587 | 5.1 × 10−65 |
Paper | Method | Result | Dataset |
---|---|---|---|
[19] | PCA + BPNN | Accuracy = 92.04% (normal and abnormal (DCM and HCM)) | Echocardiogram videos: 60 |
[20] | DPSO-FCM + GLCM and DCT + SVM | For segmentation accuracy: 95% For classification accuracy: 90% | Echocardiogram videos: DCM: 40, HCM: 40, normal: 10 |
[21] | Multilayer CNN | C statistics: 0.93 (for HCM) | HCM: 495 studies to train the model |
[22] | First-order statistics + GLCM + SVM | Studied possible texture myocardial features with p-value < 0.05 | Transthoracic echocardiography images: HCM, uremic cardiomyopathy, and hypertensive heart disease (50 cases for each group) |
Ours | LDP + ResNet-50 + ADASYN + IIHCM | Accuracy: 100% | Echocardiography images Normal: 101 HCM: 97 |
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Gudigar, A.; Raghavendra, U.; Samanth, J.; Dharmik, C.; Gangavarapu, M.R.; Nayak, K.; Ciaccio, E.J.; Tan, R.-S.; Molinari, F.; Acharya, U.R. Novel Hypertrophic Cardiomyopathy Diagnosis Index Using Deep Features and Local Directional Pattern Techniques. J. Imaging 2022, 8, 102. https://doi.org/10.3390/jimaging8040102
Gudigar A, Raghavendra U, Samanth J, Dharmik C, Gangavarapu MR, Nayak K, Ciaccio EJ, Tan R-S, Molinari F, Acharya UR. Novel Hypertrophic Cardiomyopathy Diagnosis Index Using Deep Features and Local Directional Pattern Techniques. Journal of Imaging. 2022; 8(4):102. https://doi.org/10.3390/jimaging8040102
Chicago/Turabian StyleGudigar, Anjan, U. Raghavendra, Jyothi Samanth, Chinmay Dharmik, Mokshagna Rohit Gangavarapu, Krishnananda Nayak, Edward J. Ciaccio, Ru-San Tan, Filippo Molinari, and U. Rajendra Acharya. 2022. "Novel Hypertrophic Cardiomyopathy Diagnosis Index Using Deep Features and Local Directional Pattern Techniques" Journal of Imaging 8, no. 4: 102. https://doi.org/10.3390/jimaging8040102
APA StyleGudigar, A., Raghavendra, U., Samanth, J., Dharmik, C., Gangavarapu, M. R., Nayak, K., Ciaccio, E. J., Tan, R. -S., Molinari, F., & Acharya, U. R. (2022). Novel Hypertrophic Cardiomyopathy Diagnosis Index Using Deep Features and Local Directional Pattern Techniques. Journal of Imaging, 8(4), 102. https://doi.org/10.3390/jimaging8040102