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Proceeding Paper

Synthesis and X-ray Diffraction of Cyclopalladated Compounds Derived from Imine Ligands †

Department of Inorganic Chemistry, Faculty of Chemistry, University of Santiago de Compostela, Avd. das Ciencias s/n, 15782 Santiago de compostela, Spain
*
Author to whom correspondence should be addressed.
Presented at the 26th International Electronic Conference on Synthetic Organic Chemistry, 15–30 November 2022; Available online: https://sciforum.net/event/ecsoc-26.
Chem. Proc. 2022, 12(1), 52; https://doi.org/10.3390/ecsoc-26-13699
Published: 18 November 2022

Abstract

:
The crystal structures of mononuclear cyclopalladated compounds with phosphine ligands are investigated. The reactions of the five-membered cyclopalladated dinuclear complexes [Pd(L)(µ-Cl)]2 with the monophosphine ligand (PPh3) and diphosphine ligand (dppm) in the molar ratio of 1:2, and ammonium hexafluoride in the case of compound b, result in the mononuclear complexes [Pd{2,3,4-(CHO)C6H3C(H)=NCy}{PPh3}[Cl] (1a) and [Pd{2,3,4-(CHO)C6H3C(H)=NCy}{Ph2PCH2PPh2-P,P}][PF6] (1b).

1. Introduction

The possible application of palladium compounds in medicine has become a particularly active and attractive study issue in bioinorganic and biological chemistry [1]. The use of chelating ligands in the development of physiologically active palladium compounds with improved kinetic stability is a well-established design principle [2]. Since the existence of a strong Pd–C bond in the [C, N] palladacycle enhances the stability of the organometallic complex, orthometallated N-donor ligands, such as imines, have been successfully employed for this purpose [3]. The nitrogen-donor ligands, palladacycles, are gaining popularity due to their numerous applications in organic synthesis, antitumoral drug synthesis, asymmetric synthesis, intermolecular aromatic C–H bond activation, synthesis and reactivity of organometallic complexes with biologically important ligands, and drug delivery [3]. Therefore, we report herein the synthesis and characterization of cyclopalladated compounds of the general formula [Pd{2,3,4-(MeO)3C6HC(H)=N-R}{R = Cy, 2,4,6-MeC6H2}(X = Cl, Br)] with PPh3 and dppm ligands.

2. Result and Discussion

The treatment of the halogen-bridged ligand compound a with the PPh3 in the molar ratio of 1:2 produced a monomer palladium(II) compound with PPh3 ligand, and the treatment of compound b with the diphosphine dppm and NH4PF6 in a 1:2 molar ratio gave a monomer palladium(II) compound with phosphine chelated ligand (Scheme 1). The compounds were characterized by using 31P{1H} and 1H NMR spectroscopy. In the 1H NMR, the proton H(5) for compounds 1a and 1b appears as a doublet by coupling to 31P. A doublet resonance of HC=N proton is coupled to 31P nucleus trans to nitrogen for compound 1a at 8.26 ppm [4J(PHi) = 9.1 Hz] and for compound 1b at 8.20 ppm [4J(PHi) = 7.6 Hz]. The OMe(C4) NMR resonance for compounds 1a and 1b is shifted to a lower frequency due to the shielding effect of the phosphine’s phenyl ring. The two inequivalent OMe(C4) groups have two different resonances in an antiparallel configuration, as one of them is not impacted by the phosphine’s phenyl ring. In the 31P-{1H} NMR, a singlet ascribed to the coupling of compound 1a to the 31P nucleus is shifted to a lower field ca. 43 ppm, which is consistent with a phosphorus trans to nitrogen arrangement. In contrast, for compound 1b, the two inequivalent phosphorus nuclei are represented by two doublets at −4.33 [d, J = 62.9 Hz] and −27.53 [d, J = 62.9 Hz]. The phosphorus nucleus trans to the phenyl carbon C(6) has the lower-frequency doublet, while the phosphorus nucleus trans to the imine nitrogen has the higher-frequency doublet. This is predicated on the notion that a ligand with a higher trans influence shifts the phosphorus nucleus trans 31P resonance to a lower frequency.

3. X-ray Diffraction

The mononuclear molecules (one molecule per asymmetric unit) are present in 1a (Figure 1) and 1b, and a hexafluorophosphate anion is present in the case of the crystal structure 1b (Figure 2). The coordination sphere enclosing the palladium atom in the crystal structures 1a and 1b is formed by a nitrogen atom from the imine group, an ortho carbon atom from the phenyl ring (C1), a phosphor atom from a PPh3, a chlorine atom in the case of the crystal structure of 1a, and two phosphorus atoms from a chelating dppm in the case of the crystal structure of 1b. The Pd1–C1, which is 2.027(5) Å for 1a and 2.036(3) Å for 1b, is in agreement with the partial multiple-bond character of the Pd–C bond [4]. The Pd(1)-N(1) bond length, which is 2.112(5) Å for 1a and 2.096(2) Å for 1b, is longer than the single bond predicted value of 2.011, which has an impact on the phosphine ligand’s trans effect [5]. It can be noticed in that there is an intermolecular interaction for compound 1b, resulting in a Csp3···H···C weak interaction. The bond and angel interaction C38···H10···C10 are 2.838 Å and 113.36, respectively, and the C38···C10 bond interaction is 3.331 Å (Figure 3). Table S1 lists specifics regarding the structure’s refinement and the final reliability factors.

4. Experimental Part

Compounds a and b were prepared in the same manner [6].

4.1. Synthesis of [Pd{2,3,4-(MeO)3C6HC(H)=N-C6H2}{PPh3}]. (1a)

A total of (25 mg, 0.029 mmol) of compound a was added to acetone (10 cm3). The required quantity of triphenylphosphine was added (in a 1:2 molar ratio) and the mixture was agitated for 3 h at room temperature. The solution was reduced to a low volume, and the solid was recrystallized from dichloromethane/n-Hexane and dried in vacuo. The yield was 50%. IR = ν(C=N) 1569 cm−1, ν(Pd–Cl) 298 cm−1. NMR 1H (400 MHz, CDCl3)) δ 8.26 (d, 4J(PHi) = 9.1 Hz, 1H, Hi), 7.67 (t, 3J(HH) = 7.6 Hz, 6H, PPh3), 7.35 (t, 3J(HH) = 7.6 Hz, 3H, PPh3), 7.29 (d, 3J(HH) = 7.6 Hz, 6H, PPh3), 5.65 (d, 4J(H5P) = 6.4 Hz, 1H, H5), 4.33 (m, 3J(HH) = 11.1 Hz, 1H, N-CH-Cy), 3.86 (s, 3H, OMe), 3.61 (s, 3H, OMe), 2.72 (s, 3H, OMe), 2.17–0.79 (m, 10H, Cy) (Figure S1). 31P NMR (δ ppm, CDCl3) δ 42.86.

4.2. Synthesis of [Pd{2,3,4-(MeO)3C6HC(H)=N-2,4,6-Me3C6H2}{Ph2PCH2PPh2-P,P}](PF6). (1b)

A total of (25 mg, 0.025 mmol) of compound b was added to acetone (10 cm3). The appropriate amounts of dppm and NH4PF6 were added in a molar ratio of (1:2), and the mixture was stirred for 3 h at room temperature. The orange precipitate formed was filtered off, recrystallized from dichloromethane/n-Hexane, and dried in vacuo. The yield was 85%. IR = ν(C=N) 1565 cm−1. NMR 1H (400 MHz, CDCl3) δ 8.20 (d, 4J(PHi) = 7.6 Hz, 1H, Hi), 8.06–6.99 (m, 20H, PPh2), 6.68 (s, 2H, Ha, Ha’), 6.03 (dd, 4J(H5Ptrans) = 10.4 Hz, 4J (H5Pcis) = 7.6 Hz, 1H, H5), 4.27 (dd, 2J(HP) = 12.0, 8.0 Hz, 2H, PCH2P), 3.99 (s, 3H, OMe), 3.79 (s, 3H, OMe), 3.17 (s, 3H, OMe), 2.25 (s, 3H, Me), 2.18 (s, 6H, Me*) (Figure S2). 31P-{1H} NMR (CDCl3, δ ppm) −6.0 [d, J = 66.5], −30 [d, J = 66.5], −141 [h, PF6].

Supplementary Materials

The following are available online at https://www.mdpi.com/article/10.3390/ecsoc-26-13699/s1, Figure S1: 1H NMR of compound 1a in CDCl3., Figure S2: 1H NMR of compound 1b in CDCl3, Table S1: Crystal data and structure refinement for compounds 1a and 1b.

Author Contributions

Formal analysis, B.A.J.; Methodology, B.A.J.; Writing original draft, B.A.J.; writing—review and editing, B.A.J., J.M.V. and J.M.O. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the Xunta de Galicia. GRC2019/14.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

Not applicable.

Acknowledgments

We would like to thank the Xunta de Galicia (Galicia, Spain) and the Competitive Reference Groups GRC2019/14 for their financial support.

Conflicts of Interest

The authors declare no conflict of interest.

References

  1. Alam, M.N.; Huq, F. Comprehensive review on tumour active palladium compounds and structure–activity relationships. Coord. Chem. Rev. 2016, 316, 36–67. [Google Scholar] [CrossRef]
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  5. Suzuki, T.; Morikawa, A.; Kashiwabara, K. Preparation and characterization of nickel (II), palladium (II), and platinum (II) complexes containing (2-aminoethyl) dimethylphosphine or the related didentate phosphine ligands. Bull. Chem. Soc. Jpn. 1996, 69, 2539–2548. [Google Scholar] [CrossRef]
  6. Mosteiro, R.; Fernández, A.; López-Torres, M.; Vázquez-García, D.; Suárez, A.; Fernández, J.J.; Vila, J.M. Nucleophilic addition of 1, 3-dicarbonyl compounds as a route to functionalized cyclopalladated complexes with chelated 1, 1-bis (diphenylphosphino) ethene. New J. Chem. 2002, 26, 1425–1432. [Google Scholar] [CrossRef]
Scheme 1. (i) PPh3, r.t, 3h; (ii) dppm, NH4PF6, r.t, 3h.
Scheme 1. (i) PPh3, r.t, 3h; (ii) dppm, NH4PF6, r.t, 3h.
Chemproc 12 00052 sch001
Figure 1. Molecular structure of compound 1a (Thermal ellipsoid at the probability of 50%). Selected bond distances and angles: Pd1-N1 2.112(5), Pd1-C1 2.027(5), Pd1-P1 2.262(14), Pd1-Cl1 2.379(13), C1-Pd1-N1 81.41(2), C1-Pd1-P1 97.15(16), N1-Pd1-Cl1 93.07(13), and P1-Pd1-Cl1 89.95(5).
Figure 1. Molecular structure of compound 1a (Thermal ellipsoid at the probability of 50%). Selected bond distances and angles: Pd1-N1 2.112(5), Pd1-C1 2.027(5), Pd1-P1 2.262(14), Pd1-Cl1 2.379(13), C1-Pd1-N1 81.41(2), C1-Pd1-P1 97.15(16), N1-Pd1-Cl1 93.07(13), and P1-Pd1-Cl1 89.95(5).
Chemproc 12 00052 g001
Figure 2. Molecular structure of compound 1b (Thermal ellipsoid at the probability of 50%). Selected bond distances and angles: Pd(1)-N(1) 2.096(2), Pd(1)-C(1) 2.036(3), Pd(1)-P(1) 2.251(8), Pd(1)-P(2) 2.408(8), N(1)-Pd(1)-P(1) 179.49(7), C(1)-Pd(1)-N(1) 80.47(11), P(1)-Pd(1)-P(2) 70.88(3), N(1)-Pd(1)-P(2) 108.80(7), P(1)-Pd(1)-C(1) 99.86(9), and C(1)-Pd(1)-P(2) 170.54(9).
Figure 2. Molecular structure of compound 1b (Thermal ellipsoid at the probability of 50%). Selected bond distances and angles: Pd(1)-N(1) 2.096(2), Pd(1)-C(1) 2.036(3), Pd(1)-P(1) 2.251(8), Pd(1)-P(2) 2.408(8), N(1)-Pd(1)-P(1) 179.49(7), C(1)-Pd(1)-N(1) 80.47(11), P(1)-Pd(1)-P(2) 70.88(3), N(1)-Pd(1)-P(2) 108.80(7), P(1)-Pd(1)-C(1) 99.86(9), and C(1)-Pd(1)-P(2) 170.54(9).
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Figure 3. Intermolecular interaction (CSp3···H···C) of compound 1b.
Figure 3. Intermolecular interaction (CSp3···H···C) of compound 1b.
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MDPI and ACS Style

Al Janabi, B.; Ortigueira, J.M.; Vila, J.M. Synthesis and X-ray Diffraction of Cyclopalladated Compounds Derived from Imine Ligands. Chem. Proc. 2022, 12, 52. https://doi.org/10.3390/ecsoc-26-13699

AMA Style

Al Janabi B, Ortigueira JM, Vila JM. Synthesis and X-ray Diffraction of Cyclopalladated Compounds Derived from Imine Ligands. Chemistry Proceedings. 2022; 12(1):52. https://doi.org/10.3390/ecsoc-26-13699

Chicago/Turabian Style

Al Janabi, Basma, Juan M. Ortigueira, and Jose Manuel Vila. 2022. "Synthesis and X-ray Diffraction of Cyclopalladated Compounds Derived from Imine Ligands" Chemistry Proceedings 12, no. 1: 52. https://doi.org/10.3390/ecsoc-26-13699

APA Style

Al Janabi, B., Ortigueira, J. M., & Vila, J. M. (2022). Synthesis and X-ray Diffraction of Cyclopalladated Compounds Derived from Imine Ligands. Chemistry Proceedings, 12(1), 52. https://doi.org/10.3390/ecsoc-26-13699

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