Aquac. J., Volume 6, Issue 1 (March 2026) – 10 articles

Skin pigmentation is a crucial factor influencing the market value of gilthead seabream. A three-month feeding trial evaluated the effects of dietary inclusion of Rhodotorula mucilaginosa on skin and fillet pigmentation of gilthead seabream (Sparus aurata). Four diets containing yeast were tested in triplicate tanks using 120 fish in total. Skin and fillet colours were assessed via computer-based image analysis in CIELAB, RGB and HSB spaces. Analysis of total carotenoids was also performed. Yeast inclusion increased L* and Whiteness values in the operculum and enhanced lightness in ventral skin regions. In the abdominal area, RGB values decreased, particularly in the 3% diet. Fillet responses were limited to the red muscle, where the 3% diet significantly increased a* and Chroma values. Overall, inclusion of R. mucilaginosa exceeding 2% influenced seabream skin brightness and total carotenoid content, while 3% inclusion enhanced red muscle pigmentation, suggesting potential as a natural pigment source in seabream feeds. Full article

The objective of this study was to evaluate relationships between antimicrobial use (AMU) and antimicrobial resistance (AMR) in isolates from farmed Atlantic salmon that could represent finfish pathogens in the British Columbia (BC) aquaculture industry using historical surveillance data. Antimicrobial susceptibility data were obtained for 1040 bacterial isolates from farmed Atlantic salmon submissions to the BC Animal Health Centre for 2007–2018. Antimicrobial use data were provided by the BC Ministry of Agriculture and Food from feed mill prescriptions for BC farmed Atlantic salmon for 2007–2018. Multivariable logistic regression models for all bacterial isolates with a random intercept for species were developed to determine associations with outcomes of resistance to trimethoprim-sulfadiazine (SXT), oxytetracycline (OXY), and florfenicol (FLOR). Resistance to SXT, FLOR, and/or OXY were all significantly associated with each resistance outcome in their respective models. Only the SXT resistance model was significantly associated with AMU, specifically potentiated sulfonamide use, but use was not significantly associated with AMR for any other resistance outcome. The results of this study contribute to the rapidly growing and increasingly pertinent body of literature on AMU and AMR in the unique marine aquaculture environment. Future research at the farm level linking pen-specific AMU to AMR outcomes will provide more understanding of selection pressure for AMR at the local level and provide more guidance for antimicrobial stewardship in finfish aquaculture. Full article

With the global population projected to continue to increase, the necessity for food security (i.e., a region’s ability to reliably provide food to its residents) becomes ever-present. Aquaculture is currently one of the most prevalent methods for propagating aquatic species, though aquaponics (i.e., combining aquaculture and hydroponics to artificially propagate aquatic species and plants) is often considered a more sustainable food production method in comparison. Though aquaponics is promising both environmentally and socially, the general aquaponics business model is failing to generate proper revenue in many instances. The addition of value-added and value-recovered processes is one option for producers to increase the value of their final products without major capital investment. A paper survey was deployed for this study for both aquaculture and aquaponics operations, given the current prevalence of aquaculture and infancy of aquaponics in the United States. The survey aims to understand the basic parameters of their operation while also gauging interest in the addition of value-added and value-recovered products for their operations. Less than half of the respondents were interested in value-added and value-recovered products for several different reasons. The survey also provides useful information related to operation, prior experiences, and potential future directions for aquaponics in the United States, though investigation into consumer preferences is required for optimized success of the aquaponics industry. Full article

Background: The reproductive cycle of Octopus mimus is regulated by environmental and hormonal factors, with photoperiod playing a key role in spawning induction and reproductive maturation. Understanding its underlying molecular mechanisms is essential for developing strategies to enhance controlled reproduction in aquaculture. Methods: We analyzed the expression of genes involved in the photoperiod-activated spawning induction cascade in the optic lobe and its downstream effects on the oviducal gland by performing transcriptomic analyses on females exposed to continuous light (24:0), which inhibits reproductive development, and a natural photoperiod, which induces spawning. The mRNA sequencing (RNA-Seq), quality control, gene annotation, and differential expression analyses were conducted using edgeR. Results: Spawning was completely inhibited under constant light, while 80% of control females spawned. Expression profiling revealed 89 downregulated and 34 upregulated genes in the optic lobe, and 178 downregulated and 237 upregulated genes in the oviducal gland (FDR < 0.05, |log2FC| ≥ 2), including key orthologs such as FMRFamide and myomodulin. Conclusions: These results show that the optic lobe integrates photoperiodic cues that modulate reproductive activation via a neuroendocrine cascade and coordinates spawning regulation through the oviducal gland, providing insights for improving reproductive control in aquaculture systems. Full article

The biofloc technology (BFT) system is widely used in aquaculture for the cultivation of Pacific white shrimp (Penaeus vannamei). While the practice of reusing percentages of water from previous crops to initiate the system is common, this study aimed to determine the minimum inoculum of total suspended solids (TSS) required for the rapid stabilization of nitrogen compounds and the bacterial community. The experiment was conducted in 400 L experimental units stocked with juvenile P. vannamei. We compared six treatments with different initial inoculum concentrations: control (0 mg/L), 2.5 mg/L, 5 mg/L, 10 mg/L, 20 mg/L, and 40 mg/L. These concentrations corresponded to inoculations of 0%, 0.625%, 1.25%, 2.5%, 5%, and 10% of mature biofloc water with an initial TSS concentration of 400 mg/L. Treatments with an inoculum showed a more effective oxidation of ammonia and nitrite compared to the control. However, the 2.5 mg/L treatment differed significantly (p < 0.05) from the other inoculated treatments, exhibiting persistently high ammonia concentrations and a slower stabilization time. Survival rates in the 5, 10, 20, and 40 mg/L treatments were significantly higher (p < 0.05) than in the control and 2.5 mg/L treatments, remaining around 95%, while the latter had survival rates of 48.75% and 65.83%, respectively. The final biomass were as follows: control: 479.7 ± 30 g; 2.5 mg 628.1 ± 93.3 g; 5 mg 976.5 ± 128.1 g; 10 mg 850.3 ± 158.1 g; 20 mg 789.6 ± 122.7 g; 40 mg 856 ± 96.9 g. Final biomass and productivity were highest in the 5 mg/L treatment and did not differ significantly among the 10, 20, and 40 mg/L treatments. The results suggest that in a BFT system for P. vannamei, a minimum inoculum of 5 mg/L of TSS is sufficient to achieve high water quality and superior zootechnical performance. Full article

Tenacibaculosis is a major bacterial disease in aquaculture, with Tenacibaculum discolor being characterized as one of the causative agents. This study evaluated the antimicrobial and antibiofilm potential of three isolated Pseudoalteromonas strains—Pseudoalteromonas sp. GY795-2 (deep-sea), Pseudoalteromonas spongiae MB2 (aquaculture installation), and Pseudoalteromonas tetraodonis SAE 20 (kelps)—against T. discolor strain FMCC B487. Cell-free supernatants (SNs) from each Pseudoalteromonas culture were tested in microtiter assays, assessing planktonic growth measured by OD₆₀₀ and biofilm biomass quantified by crystal violet (CV) staining. The addition of the Pseudoalteromonas SNs affected both growth and biofilm development of T. discolor strain FMCC B487. A significant decrease in T. discolor strain FMCC B487 growth and biofilm was observed in the presence of P. spongiae MB2 SN, whereas the SN of Pseudoalteromonas sp. GY795-2 promoted both growth and biofilm development of T. discolor strain FMCC B487. To assess whole-cell activity, dual-species biofilms were formed on plastic surfaces. After 24 h, all three Pseudoalteromonas strains reduced the viable T. discolor strain FMCC B487 population while maintaining their own cell numbers comparable to single-culture controls, suggesting an inhibitory interaction. These results demonstrate that these Pseudoalteromonas strains’ metabolites and cells can modulate T. discolor growth and biofilm development, highlighting their potential as biocontrol agents in aquaculture. Full article

Antimicrobial use (AMU) in finfish aquaculture production raises concerns about the link between AMU and the development of antimicrobial resistance (AMR) in bacteria found in aquatic organisms and potential transmission to humans and the environment. The objective of this study was to describe the antimicrobial susceptibilities of a historical collection of bacterial isolates from diagnostic submissions from farmed finfish in British Columbia (BC), Canada. Antimicrobial susceptibility data were obtained from the BC Ministry of Agriculture via submissions to the Animal Health Centre for 2007 to 2018 for florfenicol (FLOR), oxytetracycline (OXY), trimethoprim-sulfadiazine (SXT), and triple-sulfa compound (TRI). There were 1237 unique isolates from all finfish species (68 unique bacterial species), of which 1042 were from Atlantic salmon. For all fish species, the most common bacterial species isolated were Aeromonas salmonicida (n = 174), Aliivibrio wodanis (n = 84), and Yersinia ruckeri (n = 79). Resistance was detected to most antimicrobials tested, but levels were generally low. Resistance to FLOR was only detected in A. salmonicida. Low annual isolate numbers precluded genera-specific annual comparisons for all pathogens. Multi-drug resistance was detected, but at low levels. These results provide an important baseline for antimicrobial susceptibility data from bacterial isolates that may cause disease in finfish aquaculture in BC, Canada that will support future Canadian AMR surveillance in farmed aquaculture. Full article

Aquatic animal products are vital to global food security and nutrition, necessitating accurate, scalable, and non-destructive methods for quality assessment in aquaculture. Conventional techniques such as dissection and biochemical analysis are invasive, labor-intensive, and unsuitable for real-time or high-throughput decision-making. This review synthesizes six major categories of non-destructive technologies—electrical, spectroscopic, natural sensory, acoustic, radiographic, and infrared and microwave—classified by their underlying sensing mechanisms and therefore differing measurement capabilities and deployment feasibilities. To support objective technology selection, an Analytic Hierarchy Process (AHP) framework was developed using general performance criteria (cost, accuracy, speed, usability) and one decision-critical application-specific criterion (non-invasiveness), and was demonstrated for ovarian maturation staging in mud crabs by ranking 19 candidate techniques. Accuracy had the highest weight (0.416), but non-invasiveness (0.224) and usability (0.197) substantially influenced the final ranking, illustrating how operational and welfare constraints could shift preferred solutions despite differences in analytical accuracy. Based on the global priority weights (GA), computer vision (CV) was identified as the most suitable option (GA = 0.076), balancing affordability, throughput, ease of deployment, and animal welfare compatibility, whereas high-end modalities such as nuclear magnetic resonance (NMR; GA = 0.073) and computed tomography (CT; GA = 0.070) were constrained by cost and operational complexity. Overall, this review–AHP–case study pipeline provides a transparent and reproducible decision-support basis for selecting non-destructive technologies across aquaculture species and quality targets. Full article

Fish is highly prone to spoilage due to a combination of intrinsic biochemical processes and microbial proliferation, which together drive rapid quality deterioration during post-harvest handling and storage. These processes are further accelerated by factors such as elevated temperatures, mechanical damage, and suboptimal handling. In Mediterranean aquaculture, ice slurry is the standard harvesting method. This study aimed to characterize the initial post-harvest enzymatic activity of key proteolytic enzymes, calpain, collagenase, cathepsin B (CTSB), and cathepsin L (CTSL), in the white muscle of three commercially important species (Sparus aurata, Dicentrarchus labrax, and Pagrus major) harvested under standard practices across three seawater harvest temperatures (low, medium, and high). Muscle samples were collected over a 13-day chilled storage period post-harvest, and enzymatic activity was assessed using standardized fluorometric assays. Our findings establish the basal post-mortem proteolytic profiles for each species and reveal marked species-specific differences in enzyme activity patterns. Calpain and collagenase exhibited early and parallel activation, while CTSB and CTSL showed a coordinated increase during storage. Harvest temperature emerged as a critical factor, with the highest enzymatic activities consistently observed during the moderate temperature period. These results underscore the importance of species-specific physiology and seasonal conditions in shaping post-harvest filet degradation, offering a basis for refining harvest strategies to enhance quality management in Mediterranean aquaculture. Full article

Inefficient management of dissolved oxygen (DO) in intensive aquaculture systems limits fish welfare and productivity by creating oxygen-deficient zones and promoting hydrodynamic conditions that hinder their dispersion. Because water movement directly influences how oxygen is transported and mixed within the culture unit, inadequate flow management can allow localized hypoxia to persist even when total oxygen input appears sufficient. To address this issue, this study proposes an integrated methodology that combines in situ respirometry measurements with Computational Fluid Dynamics (CFD) simulations to evaluate the spatial distribution of DO and diagnose the operational performance of aquaculture systems. The methodology quantifies oxygen consumption using intermittent-flow respirometry, applies a three-dimensional two-phase CFD model (water–oxygen) incorporating experimental oxygen consumption rates as boundary conditions, and validates the model under real operating conditions, focusing on active metabolism as the most demanding physiological state. The model generates a spatial distribution of DO patterns that are significantly modified by pond geometry, water flow characteristics, the metabolism of the fish and fish positioning. The differences between experimental and simulated values ranged from 7.8% to 10.7%, confirming the accuracy of the proposed method. The integration of in situ metabolic measurements with CFD modeling provides a realistic representation of DO dynamics, enabling system optimization and promoting more efficient and sustainable aquaculture. Full article