Microproteins: From Identification to the Discovery of Their Functions

A special issue of Cells (ISSN 2073-4409).

Deadline for manuscript submissions: closed (15 September 2024) | Viewed by 384

Special Issue Editor


E-Mail Website
Guest Editor
Laboratoire de Recherche en Sciences Végétales (LRSV), CNRS/UT3/INPT, 31320 Auzeville-Tolosane, France
Interests: microproteins; alternative proteins; mass spectrometry; protein complexes

Special Issue Information

Dear Colleagues,

Over the past few years, the landscape of the proteome (ensemble of proteins) has undergone a transformative shift with the revelation of the pervasive expression of microproteins in many species. These small proteins appear to be important players in key cellular processes. Hidden for a long time due to technological limitations, these small yet potent entities have emerged as pivotal regulators, captivating the scientific community's interest and inspiring a new wave of research.

Microproteins (also known as alternative proteins or short open reading frame-encoded peptides (SEPs)), typically defined as yet non-annotated proteins with fewer than 100 amino acids, have challenged traditional views on protein expression and the functional significance of small peptides. Technological advancements in ribosome profiling, mass spectrometry, transcriptomics, and functional genomics have redefined our ability to identify and characterize microproteins. This Special Issue aims to showcase the latest breakthroughs in the field, providing a platform for researchers to share insights into the identification, characterization, and functional elucidation of microproteins.

The scope of this Special Issue encompasses a diverse array of topics within the realm of microproteins, including, but not limited to, the following:

  1. Identification techniques: Cutting-edge methodologies for the accurate identification and quantification of microproteins;
  2. Functional characterization: Investigations into the diverse roles and molecular mechanisms through which microproteins exert their influence on cellular processes;
  3. Evolutionary conservation: Explorations of the evolutionary conservation and divergence of microproteins across species;
  4. Technological innovations: Discussions of novel technologies and tools driving advancements in microprotein research;
  5. Emerging trends: Highlighting emerging trends and future directions in the study of microproteins.

We invite researchers, academicians, and practitioners to contribute original research articles, reviews, and communications that advance our understanding of microproteins and their roles in cellular function. 

Dr. Bertrand Fabre
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Cells is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • microproteins
  • short open reading frame-encoded peptides (SEPs)
  • alternative proteins
  • functional characterization
  • mass spectrometry
  • transcriptomics
  • ribosome profiling
  • functional genomics
  • molecular mechanisms
  • cellular processes
  • signaling pathways
  • cellular homeostasis
  • protein–protein interactions

Benefits of Publishing in a Special Issue

  • Ease of navigation: Grouping papers by topic helps scholars navigate broad scope journals more efficiently.
  • Greater discoverability: Special Issues support the reach and impact of scientific research. Articles in Special Issues are more discoverable and cited more frequently.
  • Expansion of research network: Special Issues facilitate connections among authors, fostering scientific collaborations.
  • External promotion: Articles in Special Issues are often promoted through the journal's social media, increasing their visibility.
  • e-Book format: Special Issues with more than 10 articles can be published as dedicated e-books, ensuring wide and rapid dissemination.

Further information on MDPI's Special Issue polices can be found here.

Published Papers (1 paper)

Order results
Result details
Select all
Export citation of selected articles as:

Review

16 pages, 1498 KiB  
Review
Small ORFs, Big Insights: Drosophila as a Model to Unraveling Microprotein Functions
by Hélène Chanut-Delalande and Jennifer Zanet
Cells 2024, 13(19), 1645; https://doi.org/10.3390/cells13191645 (registering DOI) - 2 Oct 2024
Abstract
Recently developed experimental and computational approaches to identify putative coding small ORFs (smORFs) in genomes have revealed thousands of smORFs localized within coding and non-coding RNAs. They can be translated into smORF peptides or microproteins, which are defined as less than 100 amino [...] Read more.
Recently developed experimental and computational approaches to identify putative coding small ORFs (smORFs) in genomes have revealed thousands of smORFs localized within coding and non-coding RNAs. They can be translated into smORF peptides or microproteins, which are defined as less than 100 amino acids in length. The identification of such a large number of potential biological regulators represents a major challenge, notably for elucidating the in vivo functions of these microproteins. Since the emergence of this field, Drosophila has proved to be a valuable model for studying the biological functions of microproteins in vivo. In this review, we outline how the smORF field emerged and the nomenclature used in this domain. We summarize the technical challenges associated with identifying putative coding smORFs in the genome and the relevant translated microproteins. Finally, recent findings on one of the best studied smORF peptides, Pri, and other microproteins studied so far in Drosophila are described. These studies highlight the diverse roles that microproteins can fulfil in the regulation of various molecular targets involved in distinct cellular processes during animal development and physiology. Given the recent emergence of the microprotein field and the associated discoveries, the microproteome represents an exquisite source of potentially bioactive molecules, whose in vivo biological functions can be explored in the Drosophila model. Full article
Back to TopTop