- Article
Arundo donax is a widely distributed perennial grass with value for ecological restoration and bioenergy production. Five complete plastomes from samples collected at four sites in Guangxi and one site in Shandong, China, were assembled and compared. The plastomes were 137,153–137,187 bp long and had an overall GC content of 38.62%. Each assembly contained 129 functional gene features (83 protein-coding genes, 38 tRNA genes, and eight rRNA genes) plus two 759 bp truncated ycf2-related features, giving 131 annotated features in total. MISA detected 188–190 candidate simple sequence repeat motifs per plastome, and genome structure and collinearity were highly conserved among the five samples. Remapping of the recovered paired-end reads yielded mean genome-wide depths of 1762.05–2932.37×, with every plastome position covered at ≥502×. All ten ycf2-related copies had 100% breadth at ≥100×, a minimum per-base depth of 1510×, read-supported boundaries, and no position with an alternative-base fraction ≥5%. A complete plastome maximum-likelihood tree rooted with Anomochloa marantoidea placed the XL/YS haplotype as sister to A. plinii Turra and A. formosana Hack. as sister to Phragmites australis (Cav.) Trin. ex Steud., both with 100% bootstrap support. These relationships remained the same after removal of the mixed diagnostic site and after deletion of one IR copy from every plastome. This study expands publicly verifiable plastome resources for A. donax. Moreover, it shows that both the genus Arundo and the species A. donax may not be monophyletic, although extensive sampling will be desired to confirm these results. Finally, the truncated ycf2 gene found here will be worth further study to determine its evolutionary genomic and functional status in the genus and family.
13 November 2026









![Drawings of Mastogloia decussata from Schmidt [25], pl. 186, figs 40–44, with original caption. [Public domain].](https://mdpi-res.com/diversity/diversity-18-00457/article_deploy/html/images/diversity-18-00457-g001-550.jpg)