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Diversity

Diversity is a peer-reviewed, open access journal on the science of biodiversity (from molecules, genes, populations, and species to ecosystems), and is published monthly online by MDPI.

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All Articles (6,600)

  • Article
  • Open Access

Arundo donax is a widely distributed perennial grass with value for ecological restoration and bioenergy production. Five complete plastomes from samples collected at four sites in Guangxi and one site in Shandong, China, were assembled and compared. The plastomes were 137,153–137,187 bp long and had an overall GC content of 38.62%. Each assembly contained 129 functional gene features (83 protein-coding genes, 38 tRNA genes, and eight rRNA genes) plus two 759 bp truncated ycf2-related features, giving 131 annotated features in total. MISA detected 188–190 candidate simple sequence repeat motifs per plastome, and genome structure and collinearity were highly conserved among the five samples. Remapping of the recovered paired-end reads yielded mean genome-wide depths of 1762.05–2932.37×, with every plastome position covered at ≥502×. All ten ycf2-related copies had 100% breadth at ≥100×, a minimum per-base depth of 1510×, read-supported boundaries, and no position with an alternative-base fraction ≥5%. A complete plastome maximum-likelihood tree rooted with Anomochloa marantoidea placed the XL/YS haplotype as sister to A. plinii Turra and A. formosana Hack. as sister to Phragmites australis (Cav.) Trin. ex Steud., both with 100% bootstrap support. These relationships remained the same after removal of the mixed diagnostic site and after deletion of one IR copy from every plastome. This study expands publicly verifiable plastome resources for A. donax. Moreover, it shows that both the genus Arundo and the species A. donax may not be monophyletic, although extensive sampling will be desired to confirm these results. Finally, the truncated ycf2 gene found here will be worth further study to determine its evolutionary genomic and functional status in the genus and family.

Diversity

13 November 2026

Chloroplast genome map of Arundo donax.
  • Article
  • Open Access

The coleopteran Eutrichillus comus (Bates) (Cerambycidae: Lamiinae) was recently detected boring into the branches and trunks of Mexican lemon (Citrus aurantiifolia Swingle), Persian lemon (Citrus latifolia Tanaka), and grapefruit (Citrus paradisi Macfad) in the Apatzingán Valley, Michoacán, Mexico. This study characterized the larval development of two E. comus populations by determining the number of instars and estimating their corresponding growth ratios, using larvae collected from Persian lemon and Mexican lemon trees. Morphometric analyses were based on two variables measured: head capsule width and pronotum width. Frequency distributions of each variable analyzed separately did not allow clear delimitation of larval instars in either population. However, frequency distributions based on a proportion factor derived from the product of the two measured variables and the following discriminant analysis clearly indicated that both E. comus populations undergo three distinct instars. The mean growth ratios were 1.50 and 1.36 for the Persian lemon and Mexican lemon populations, respectively. These estimated ratios were not consistent with the growth constant predicted by Dyar’s rule. These findings provide baseline biological information that may contribute to developing preventive management approaches to minimize the risk of this species becoming an economically significant pest.

Diversity

13 November 2026

Morphometric traits used for larval instar identification in Eutrichillus comus. (A) head capsule width and (B) pronotum width.
  • Article
  • Open Access

Crop straw return is widely used to maintain soil fertility in intensive rice systems. How soil microbial communities respond to nitrogen rate under full straw return, and whether these responses differ between soil layers, remains poorly resolved. In this study, a field experiment with five nitrogen application rates (0 [RF0], 53 [RF1], 93 [RF2], 133 [RF3], and 173 [RF4] kg N ha−1) under uniform full rice straw return (7500 kg straw ha−1) was conducted in a cold-region paddy ecosystem. Soil physicochemical properties, bacterial community structure and functional potential (metagenomics) were systematically analyzed in surface (0–10 cm) and subsurface (10–20 cm) layers. Results showed that moderate nitrogen application (133 kg N ha−1) optimally enhanced total nitrogen, total organic carbon, labile carbon fractions, and available phosphorus and potassium in both soil layers. However, excessive nitrogen application (173 kg N ha−1) provided no further benefits and significantly decreased available phosphorus and potassium relative to their peak values observed under optimal nitrogen inputs. A combined PCoA of both soil layers showed no separation by depth or by nitrogen rate. PERMANOVA detected a weak but significant overall model (R2 = 0.241, p = 0.0002) without a significant depth × nitrogen interaction (R2= 0.065, p = 0.328). Bacterial taxonomic composition exhibited strong resistance to nitrogen disturbance, with a large core microbiome (dominated by Proteobacteria, Chloroflexi, and Acidobacteria) remaining stable across treatments and depths. In contrast, functional genes and metabolic pathways involved in carbon, nitrogen, and sulfur cycling displayed high plasticity. Moderate nitrogen activated complex carbohydrate degradation and dark carbon fixation in deeper soil, while high nitrogen shifted surface communities from autotrophic carbon fixation (Calvin-Benson-Bassham cycle) toward heterotrophic fermentation and strongly stimulated denitrification pathways, increasing potential gaseous nitrogen loss. Overall, this study reveals a clear taxonomic-functional decoupling and demonstrates that 133 kg N ha−1 represents the optimal threshold for balancing soil nutrient accumulation, microbial functional activity, and environmental risk under full rice straw return. These findings provide a theoretical basis for precision nitrogen management in straw-return systems.

Diversity

13 November 2026

Effects of nitrogen application gradients on soil bacterial α-diversity in the surface 0–10 cm (A,C,E,G) and subsurface 10–20 cm (B,D,F,H) layers under full rice straw return. Panels show the ACE (A,B), Chao1 (C,D), Shannon (E,F), and Simpson (G,H) indices. In the boxplots, the center line represents the median, the lower and upper hinges correspond to the first and third quartiles (25th and 75th percentiles), the whiskers extend to the largest and smallest values no further than 1.5 × IQR from the hinge, and points beyond the whiskers are plotted as outliers. One-way ANOVA detected no significant nitrogen effect on any index in either soil layer (all p > 0.05); therefore, the Duncan letters are identical among treatments.
  • Article
  • Open Access

Vallisneria spinulosa Yan (V. spinulosa Yan), as a submerged macrophyte and herbal plant, simultaneously exhibits ecological restoration functions in water bodies and medicinal value. However, it cannot be efficiently planted and cultivated in turbid water bodies. Enclosure cultivation technology can solve this issue in real ecological engineering, and enclosure area is an important parameter. The impact of enclosure area on growth characteristics, water purification, and microbial communities of the V. spinulosa Yan growth system in the enclosure cultivation process was studied, with planting density (50 plants·m−2) and soil volume per pot kept constant. The results showed that enclosure area primarily shifted biomass allocation: aboveground biomass decreased, and belowground biomass increased with increasing enclosure area, with the root-to-shoot ratio rising from 0.449 (A1, 1 × 1 m enclosure area) to 1.013 (A16, 4 × 4 m enclosure area). Total biomass, leaf number, soluble protein, and soluble sugar did not differ significantly among treatments. Leaf length was significantly greatest in A1. Notably, chlorophyll a, chlorophyll b, and total chlorophyll were significantly lowest in the A4 (2 × 2 m enclosure area) treatment, while SOD (superoxide dismutase) activity was highest in A1 and POD (peroxidase) activity was lowest in A1, all surviving global multiple-comparison correction. Nutrient removal loads (TN, nitrate nitrogen, TP, and PO43−-P) were significantly higher in planted treatments than in the unplanted control, but pairwise comparisons among planted treatments showed no significant differences. Furthermore, A1 exhibited significantly higher TP (total phosphorus) and PO43−-P (phosphate) removal loads than the other planted treatments, and its TN (total nitrogen) removal load was significantly higher than that of A9 (3 × 3 m enclosure area). Overall, enclosure area primarily shifted biomass allocation and induced complex physiological responses, without uniformly improving growth or water purification performance. This study can provide valuable references for efficient cultivation of submerged macrophytes and enhancing water purification effects in real ecological engineering.

Diversity

11 November 2026

Biomass of individual V. spinulosa Yan under different enclosure areas: (a) aboveground biomass, (b) belowground biomass, (c) total biomass, and (d) root-shoot ratio. Data are presented as enclosure means ± SD (n = 3 independent enclosures). Shadow area in (a–c) represents the confidence interval of regression fitting analysis.

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Diversity - ISSN 1424-2818