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Recent Advances and Emerging Applications of Aptamers

A special issue of Sensors (ISSN 1424-8220). This special issue belongs to the section "Biosensors".

Deadline for manuscript submissions: closed (20 April 2022) | Viewed by 3700

Special Issue Editors


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Guest Editor
Department of Soil Ecology, Helmholtz Centre for Environmental Research – UFZ, Theodor-Lieser-Str. 4, 06120 Halle, Germany
Interests: aptamer selection and characterization; SELEX; aptamer applications; aptamer-based assays; aptasensors; ELONA; SPR; G-quadruplexes; microbiology; NGS; microbial communities; microbial ecology; yeasts
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E-Mail Website
Guest Editor
Department Environmental and Biotechnology Centre, Helmholtz Centre for Environmental Research – UFZ, Permoserstr. 15, 04318 Leipzig, Germany
Interests: aptamer selection and characterization; SELEX; aptamer based sensors and assays; biosensor development and application; bioelectrotechnology; bioelectrochemistry
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Aptamers have become a highly promising class of targeting molecules, and have attracted the attention of many scientists in various research areas. Aptamers are known as a special kind of functional nucleic acids, that are able to recognize and bind their target molecules with high affinity and specificity. They are usually selected using an evolutionary method called SELEX. This technology has been extensively modified and optimized over the years and significantly expanded by computational approaches and new sequencing technologies.

The portfolio of aptamers for specific targets (from small molecules over proteins to complex target structures) is increasingly growing. The varied application possibilities of aptamers include areas such as basic research, health (medicine/pharmacy), environmental monitoring or food industry. Aptamers have a very promising potential as theragnostic agents, delivery agents, molecular imaging tools, and as capture or reporter molecules. They have been successfully verified as molecular recognition elements in a wide range of analytical systems, using different detection principles (e.g., electrochemical, optical, acoustic or mass-sensitive methods, colorimetric approaches, fluorescence-based or SPR-based methods). New technologies like nanotechnologies and recent advances in materials sciences and sensor designs support the development of new aptasensors and aptamer-based detection assays.

This Special Issue of Sensors will cover recent advances and emerging applications of aptamers. We welcome submissions that expand the exciting world of aptamers by the presentation of new aptamers and new methods for their selection, by opening up new fields of application, describing new aptasensor designs, or by developing powerful aptamer-based assays.

Research papers and review articles will be considered. We look forward to and welcome your participation in this Special Issue.

Dr. Regina Stoltenburg
Dr. Beate Strehlitz
Guest Editors

Manuscript Submission Information

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Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Sensors is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2600 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • aptamers
  • affinity molecules
  • biomolecular interactions
  • aptasensors
  • aptamer-based assays
  • clinical diagnostics
  • environmental analysis
  • food analysis
  • water analytics
  • SELEX

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Published Papers (1 paper)

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Research

17 pages, 2980 KiB  
Article
Changes of Viscoelastic Properties of Aptamer-Based Sensing Layers Following Interaction with Listeria innocua
by Marek Tatarko, Sandro Spagnolo, Veronika Oravczová, Judit Süle, Milan Hun, Attila Hucker and Tibor Hianik
Sensors 2021, 21(16), 5585; https://doi.org/10.3390/s21165585 - 19 Aug 2021
Cited by 7 | Viewed by 2836
Abstract
A multiharmonic quartz crystal microbalance (QCM) has been applied to study the viscoelastic properties of the aptamer-based sensing layers at the surface of a QCM transducer covered by neutravidin following interaction with bacteria Listeria innocua. Addition of bacteria in the concentration range 5 [...] Read more.
A multiharmonic quartz crystal microbalance (QCM) has been applied to study the viscoelastic properties of the aptamer-based sensing layers at the surface of a QCM transducer covered by neutravidin following interaction with bacteria Listeria innocua. Addition of bacteria in the concentration range 5 × 103–106 CFU/mL resulted in a decrease of resonant frequency and in an increase of dissipation. The frequency decrease has been lower than one would expect considering the dimension of the bacteria. This can be caused by lower penetration depth of the acoustics wave (approximately 120 nm) in comparison with the thickness of the bacterial layer (approximately 500 nm). Addition of E. coli at the surface of neutravidin as well as aptamer layers did not result in significant changes in frequency and dissipation. Using the Kelvin–Voight model the analysis of the viscoelastic properties of the sensing layers was performed and several parameters such as penetration depth, Γ, viscosity coefficient, η, and shear modulus, μ, were determined following various modifications of QCM transducer. The penetration depth decreased following adsorption of the neutravidin layer, which is evidence of the formation of a rigid protein structure. This value did not change significantly following adsorption of aptamers and Listeria innocua. Viscosity coefficient was higher for the neutravidin layer in comparison with the naked QCM transducer in a buffer. However, a further increase of viscosity coefficient took place following attachment of aptamers suggesting their softer structure. The interaction of Listeria innocua with the aptamer layer resulted in slight decrease of viscosity coefficient. The shearing modulus increased for the neutravidin layer and decreased following aptamer adsorption, while a slight increase of µ was observed after the addition of Listeria innocua. Full article
(This article belongs to the Special Issue Recent Advances and Emerging Applications of Aptamers)
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