Phylogenetic and Evolutionary Comparison of Mitogenomes Reveal Adaptive Radiation of Lampriform Fishes
Abstract
:1. Introduction
2. Results
2.1. Phylogeny of Lampriformes
2.2. Mitogenome Organization and tRNA Loss of Lampriformes
2.3. Nucleotide Diversity and Positive Selection Analysis
3. Discussion
3.1. Lampriformes Phylogeny
3.2. Mitogenomic Basis of Adaptive Radiation of Lampriformes
3.3. Adaptive Evolution of Mitochondrial Genes in Whole-Body Endothermic Opah
4. Materials and Methods
4.1. Sample Acquisition, Tissue Collection, and DNA Extraction
4.2. Library Construction and High-Throughput Sequencing
4.3. Sequence Assembly and Annotation
4.4. Phylogenetic Analyses
4.5. Bioinformatics Analyses
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Taxon | Species | Number | Lost (−) tRNAs | Accession |
---|---|---|---|---|
Chionodraco myersi | 21 | −E | NC_010689 | |
Lampris incognitus | 21 | −P | OP979106 | |
Osteichthyes | Lampris guttatus | 21 | −P | NC_003165 |
Desmodema ploystictum | 21 | −F | AP012969 | |
Eumecichthys fiski | 21 | −F | AP012970 | |
Lophotus capellei | 20 | −(F and P) | AP012971 |
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Wang, J.-f.; Yu, H.-y.; Ma, S.-b.; Lin, Q.; Wang, D.-z.; Wang, X. Phylogenetic and Evolutionary Comparison of Mitogenomes Reveal Adaptive Radiation of Lampriform Fishes. Int. J. Mol. Sci. 2023, 24, 8756. https://doi.org/10.3390/ijms24108756
Wang J-f, Yu H-y, Ma S-b, Lin Q, Wang D-z, Wang X. Phylogenetic and Evolutionary Comparison of Mitogenomes Reveal Adaptive Radiation of Lampriform Fishes. International Journal of Molecular Sciences. 2023; 24(10):8756. https://doi.org/10.3390/ijms24108756
Chicago/Turabian StyleWang, Jin-fang, Hai-yan Yu, Shao-bo Ma, Qiang Lin, Da-zhi Wang, and Xin Wang. 2023. "Phylogenetic and Evolutionary Comparison of Mitogenomes Reveal Adaptive Radiation of Lampriform Fishes" International Journal of Molecular Sciences 24, no. 10: 8756. https://doi.org/10.3390/ijms24108756