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Keywords = COBRA-like

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18 pages, 9009 KiB  
Article
Wheat COBRA-like Gene TaCOBL6A2 Confers Heat Tolerance in Plants
by Qingyan Deng, Jiangtao Luo, Jianmin Zheng, Peixun Liu, Dejun Wang and Zongjun Pu
Int. J. Mol. Sci. 2025, 26(9), 4101; https://doi.org/10.3390/ijms26094101 - 25 Apr 2025
Viewed by 248
Abstract
Wheat, a cold-tolerant crop, suffers substantial yield and quality losses under heat stress, yet the genetic mechanisms underlying thermotolerance remain understudied. We characterized TaCOBL6A2, a novel COBRA-like gene on wheat chromosome 6A encoding a glycosylphosphatidylinositol (GPI)-anchored protein with a conserved COBRA domain, [...] Read more.
Wheat, a cold-tolerant crop, suffers substantial yield and quality losses under heat stress, yet the genetic mechanisms underlying thermotolerance remain understudied. We characterized TaCOBL6A2, a novel COBRA-like gene on wheat chromosome 6A encoding a glycosylphosphatidylinositol (GPI)-anchored protein with a conserved COBRA domain, and performed subcellular localization, tissue-specific expression, and stress response analyses to investigate its function. Functional validation was conducted based on TaCOBL6A2 overexpression in Arabidopsis and transcriptomic profiling. Additionally, a haplotype analysis of wheat varieties was performed to associate genotypes with heat stress phenotypes. The results show that TaCOBL6A2 is localized to the plasma membrane, the cell wall, and the nucleus, with the highest expression in early-stage grains. Its transcription was strongly induced by heat stress, exceeding that in response to cold, salt, or drought. Its overexpression in Arabidopsis enhanced thermotolerance and activated heat shock proteins (HSPs) and oxygen homeostasis pathways. The elite haplotype, Hap1, was associated with improved seedling growth and elevated antioxidant enzyme activity under heat stress. Our findings reveal that TaCOBL6A2 is a key regulator of wheat heat tolerance and could be used as a molecular target for breeding climate-resilient cultivars. Full article
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18 pages, 3330 KiB  
Article
Physiological Effects and Economic Impact of Plant Growth Regulator Applications on Soybean
by Brenna Cannon, Hannah Shear, Colton Johnson, Josie Rice and Josh Lofton
Agronomy 2025, 15(4), 965; https://doi.org/10.3390/agronomy15040965 - 16 Apr 2025
Viewed by 563
Abstract
Soybean production in the southern Great Plains (SGP) faces challenges due to yield-limiting factors, including high temperatures and inconsistent precipitation. These conditions can lead to excess vegetative growth, similar to what occurs in crops like cotton. Management strategies utilizing plant growth regulators (PGRs) [...] Read more.
Soybean production in the southern Great Plains (SGP) faces challenges due to yield-limiting factors, including high temperatures and inconsistent precipitation. These conditions can lead to excess vegetative growth, similar to what occurs in crops like cotton. Management strategies utilizing plant growth regulators (PGRs) have been applied to control this excessive growth, yet there is limited information on methods to mitigate vegetative growth in soybeans through modifications to the apical meristem. Field trials conducted in 2022 and 2023 investigated the effects of altering the apical growth using Ascend SL, Compact, Cobra, Cygin Pro, and physical removal, with treatments applied at the V4 and R2 growth stages. This study highlights the significance of customized application strategies to enhance profitability under diverse environmental conditions. Ascend and Cygin Pro demonstrate improving yield stability under adverse climatic conditions. Both applications of Compact produced relatively stable yields across site years, while Cobra and physical removal methods necessitate careful consideration of timing to minimize yield losses. Further research is essential to optimize these management strategies for soybean production in the SGP. Full article
(This article belongs to the Special Issue Crop Management in Water-Limited Cropping Systems)
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15 pages, 3553 KiB  
Article
Bite First, Bleed Later: How Philippine Trimeresurus Pit Viper Venoms Hijack Blood Clotting
by Daniel Albert E. Castillo, Lorenzo Seneci, Abhinandan Chowdhury, Marilyn G. Rimando and Bryan G. Fry
Toxins 2025, 17(4), 185; https://doi.org/10.3390/toxins17040185 - 7 Apr 2025
Viewed by 2191
Abstract
The Philippines has a high diversity of venomous snake species, but there is minimal information on their envenomation effects. This is evidenced by the small number of case reports, the poor reporting of envenomation cases, and the absence of specific antivenoms apart from [...] Read more.
The Philippines has a high diversity of venomous snake species, but there is minimal information on their envenomation effects. This is evidenced by the small number of case reports, the poor reporting of envenomation cases, and the absence of specific antivenoms apart from one against the Philippine cobra (Naja philippinensis). This study sought to profile the action of selected Philippine pit viper venoms on blood coagulation and to investigate whether commercially available non-specific antivenoms can provide adequate protection against these venoms. Venom from the pit vipers Trimeresurus flavomaculatus and Trimeresurus mcgregori were subjected to coagulation assays, antivenom cross-neutralization tests, and thromboelastography. Venoms from both species were able to clot human plasma and isolated human fibrinogen. Consistent with pseudo-procoagulant/thrombin-like activity, the resulting fibrin clots were weak and transient, thereby contributing to net anticoagulation through the depletion of fibrinogen levels. Clotting factors fIXa and fXa were also inhibited by the venoms, further contributing to the net anticoagulant activity. Monovalent and polyvalent antivenoms from the Thai Red Cross Society were effective against both venoms, indicating cross-neutralization of venom toxins; the polyvalent antivenom was able to rescue fibrinogen clotting to a greater degree than the monovalent antivenom. Our findings highlight the coagulopathic effects of these pit viper venoms and suggest the utility of procuring the non-specific antivenoms for areas in the Philippines with a high risk for pit viper envenomation. Full article
(This article belongs to the Special Issue Snake Bite and Related Injury)
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18 pages, 5165 KiB  
Article
Response of Wheat Genotypes Stressed by High Temperature in Terms of Yield and Protein Composition Across Diverse Environments in Australia
by Yunlong Bai, Ali Khoddami, Valeria Messina, Zhao Zhang and Daniel K. Y. Tan
Agriculture 2025, 15(5), 514; https://doi.org/10.3390/agriculture15050514 - 27 Feb 2025
Cited by 1 | Viewed by 620
Abstract
Global climate change poses a significant threat to wheat (Triticum aestivum L.) production due to rising temperatures. This study aimed to investigate the impact of high temperatures on wheat yield, thousand kernel weight (TKW), colour, and protein composition to inform breeding strategies [...] Read more.
Global climate change poses a significant threat to wheat (Triticum aestivum L.) production due to rising temperatures. This study aimed to investigate the impact of high temperatures on wheat yield, thousand kernel weight (TKW), colour, and protein composition to inform breeding strategies for heat tolerance. Two field experiments were conducted: one at three locations in Australia (Horsham, (Vic) Narrabri, (NSW) and Merredin, (W.A.)) in 2019, involving two wheat varieties (Berkut (high-heat-tolerant) and Sokoll (medium-heat-tolerant)) sown at normal (TOS1) and late (TOS2) sowing times; and a second experiment at Narrabri in 2019 and 2020, involving three wheat varieties (Cobra (heat-sensitive), Flanker (high-heat-tolerant) and Suntop (medium-heat-tolerant)) sown at normal (TOS1) and late (TOS2) sowing times. There were reductions in yield and TKW under high temperatures (p < 0.05), particularly in late sowing conditions. The glutenin/gliadin ratio decreased, affecting dough strength and elasticity, especially at Merredin. Heat-tolerant varieties like Flanker and Suntop maintained protein quality, with an increase in the glutenin/gliadin ratio, under high temperature. These findings highlight the necessity for breeding heat-tolerant wheat varieties that can sustain both yield and quality. Future research should focus on genetic traits for heat tolerance, advanced molecular techniques, and interdisciplinary approaches to ensure sustainable wheat production in a changing climate. Full article
(This article belongs to the Section Crop Production)
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24 pages, 5511 KiB  
Article
An Anti-Disturbance Attitude Control Method for Fixed-Wing Unmanned Aerial Vehicles Based on an Integral Sliding Mode Under Complex Disturbances During Sea Flight
by Shuaishuai Sui, Yiping Yao and Feng Zhu
Drones 2025, 9(3), 164; https://doi.org/10.3390/drones9030164 - 23 Feb 2025
Viewed by 737
Abstract
The increasing complexity of aerial acrobatics missions necessitates ever-higher levels of attitude control precision in fixed-wing unmanned aerial vehicles (UAVs). Traditional control methods, such as feedback linearization and small disturbance derivation linear models, falter in maintaining attitude tracking accuracy, due to the presence [...] Read more.
The increasing complexity of aerial acrobatics missions necessitates ever-higher levels of attitude control precision in fixed-wing unmanned aerial vehicles (UAVs). Traditional control methods, such as feedback linearization and small disturbance derivation linear models, falter in maintaining attitude tracking accuracy, due to the presence of unanticipated disturbances—most notably, wave disturbances during low-altitude maritime flights—and model uncertainties introduced by factors like large-angle maneuvers, intricate aerodynamic characteristics, and fuel consumption. Consequently, these limitations impede the successful execution of intricate maneuvers, such as looping, the split-S, the Immelmann turn, and the Pougatcheff cobra maneuver. In response to these challenges, we propose an integral sliding mode control based on disturbance observer (ISMC-DO) system to achieve robust attitude angle tracking amidst model uncertainties and mitigate the effects of wave disturbances. Additionally, quaternion representations are adopted as a supplement to Euler angles, thereby resolving the singularity issues inherent in the latter. By using the Lyapunov function, the ISMC-DO-based control system is shown to be asymptotically stable. Simulation results further validate that ISMC-DO can achieve high-precision attitude tracking control of the UAV under wave disturbance. Full article
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16 pages, 258 KiB  
Article
Students’ Perceptions of Racial Diversity and Inclusion in UK Universities
by Christopher Jones and Vikki Boliver
Soc. Sci. 2025, 14(2), 84; https://doi.org/10.3390/socsci14020084 - 1 Feb 2025
Viewed by 1193
Abstract
Building on previous studies of racial inequality in higher education, this paper reports the findings of an online survey (N = 407) exploring the extent to which UK university students recognised the existence of racism in wider society and perceived the need for [...] Read more.
Building on previous studies of racial inequality in higher education, this paper reports the findings of an online survey (N = 407) exploring the extent to which UK university students recognised the existence of racism in wider society and perceived the need for greater racial diversity and inclusion on campus. Utilising the CoBRAS scale developed by Neville and colleagues together with a new Racially Inclusive Attitudes Scale (RIAS) designed by the lead author of this paper, we find that most students reject the notion that we live in a colour-blind society and feel that their university needs to do more to foster racial diversity and inclusion on campus. However, while the rejection of colour-blind narratives was equally strong across students from all ethnic groups, Black students were significantly more likely than students from other ethnic groups to perceive the need for their university to become more racially diverse and inclusive. Full article
(This article belongs to the Section Social Stratification and Inequality)
19 pages, 3253 KiB  
Article
Leptospirosis Risk Assessment in Rodent Populations and Environmental Reservoirs in Humanitarian Aid Settings in Thailand
by Panadda Krairojananan, Kasima Wasuworawong, Surachai Leepitakrat, Taweesak Monkanna, Elizabeth W. Wanja, Silas A. Davidson, Betty K. Poole-Smith, Patrick W. McCardle, Alyssa Mann and Erica J. Lindroth
Microorganisms 2025, 13(1), 29; https://doi.org/10.3390/microorganisms13010029 - 27 Dec 2024
Viewed by 1085
Abstract
Leptospirosis, a global zoonotic disease caused by Leptospira spp., presents high morbidity and mortality risks, especially in tropical regions like Thailand. Military personnel deployed in endemic areas, such as during the Cobra Gold Joint exercise, face heightened exposure. This study assessed Leptospira’s [...] Read more.
Leptospirosis, a global zoonotic disease caused by Leptospira spp., presents high morbidity and mortality risks, especially in tropical regions like Thailand. Military personnel deployed in endemic areas, such as during the Cobra Gold Joint exercise, face heightened exposure. This study assessed Leptospira’s prevalence in rodents and environmental reservoirs at military training sites from 2017 to 2022. A surveillance program was conducted at Engineering Civil Assistance Program (ENCAP) training sites using real-time PCR, dark-field microscopy, and 16S rRNA gene sequencing to detect Leptospira in rodents and environmental samples. Results showed a 1.3% infection rate in rodents (15 of 1161), while Leptospira was detected in 10.2% of water samples (42 of 413) and 23.1% of soil samples (30 of 130). Diverse Leptospira interrogans strains circulated among rodents, and three groups of naturally circulating Leptospira strains were detected in environmental reservoirs. These findings underscore Leptospira’s survival and transmission potential within exercise sites, informing Force Health Protection (FHP) decisions. By integrating pre-exercise data on primary hosts and environmental reservoirs with historical local outbreak records and research on risk factors, this study identifies key areas for public health intervention and potential mitigation strategies. Full article
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13 pages, 2625 KiB  
Article
Genome-Wide Identification and Hormone Response Analysis of the COBL Gene Family in Barley
by Panrong Ren, Liang Ma, Wei Bao and Jie Wang
Genes 2024, 15(5), 612; https://doi.org/10.3390/genes15050612 - 11 May 2024
Cited by 1 | Viewed by 1550
Abstract
Barley (Hordeum vulgare L.), a diverse cereal crop, exhibits remarkable versatility in its applications, ranging from food and fodder to industrial uses. The content of cellulose in barley is significantly influenced by the COBRA genes, which encode the plant glycosylphosphatidylinositol (GPI)-anchored protein [...] Read more.
Barley (Hordeum vulgare L.), a diverse cereal crop, exhibits remarkable versatility in its applications, ranging from food and fodder to industrial uses. The content of cellulose in barley is significantly influenced by the COBRA genes, which encode the plant glycosylphosphatidylinositol (GPI)-anchored protein (GAP) that plays a pivotal role in the deposition of cellulose within the cell wall. The COBL (COBRA-Like) gene family has been discovered across numerous species, yet the specific members of this family in barley remain undetermined. In this study, we discovered 13 COBL genes within the barley genome using bioinformatics methods, subcellular localization, and protein structure analysis, finding that most of the barley COBL proteins have a signal peptide structure and are localized on the plasma membrane. Simultaneously, we constructed a phylogenetic tree and undertook a comprehensive analysis of the evolutionary relationships. Other characteristics of HvCOBL family members, including intraspecific collinearity, gene structure, conserved motifs, and cis-acting elements, were thoroughly characterized in detail. The assessment of HvCOBL gene expression in barley under various hormone treatments was conducted through qRT-PCR analysis, revealing jasmonic acid (JA) as the predominant hormonal regulator of HvCOBL gene expression. In summary, this study comprehensively identified and analyzed the barley COBL gene family, aiming to provide basic information for exploring the members of the HvCOBL gene family and to propose directions for further research. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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25 pages, 6998 KiB  
Article
The Cloning and Characterization of a Three-Finger Toxin Homolog (NXH8) from the Coralsnake Micrurus corallinus That Interacts with Skeletal Muscle Nicotinic Acetylcholine Receptors
by Henrique Roman-Ramos, Álvaro R. B. Prieto-da-Silva, Humberto Dellê, Rafael S. Floriano, Lourdes Dias, Stephen Hyslop, Raphael Schezaro-Ramos, Denis Servent, Gilles Mourier, Jéssica Lopes de Oliveira, Douglas Edgard Lemes, Letícia V. Costa-Lotufo, Jane S. Oliveira, Milene Cristina Menezes, Regina P. Markus and Paulo Lee Ho
Toxins 2024, 16(4), 164; https://doi.org/10.3390/toxins16040164 - 22 Mar 2024
Cited by 1 | Viewed by 2106
Abstract
Coralsnakes (Micrurus spp.) are the only elapids found throughout the Americas. They are recognized for their highly neurotoxic venom, which is comprised of a wide variety of toxins, including the stable, low-mass toxins known as three-finger toxins (3FTx). Due to difficulties in [...] Read more.
Coralsnakes (Micrurus spp.) are the only elapids found throughout the Americas. They are recognized for their highly neurotoxic venom, which is comprised of a wide variety of toxins, including the stable, low-mass toxins known as three-finger toxins (3FTx). Due to difficulties in venom extraction and availability, research on coralsnake venoms is still very limited when compared to that of other Elapidae snakes like cobras, kraits, and mambas. In this study, two previously described 3FTx from the venom of M. corallinus, NXH1 (3SOC1_MICCO), and NXH8 (3NO48_MICCO) were characterized. Using in silico, in vitro, and ex vivo experiments, the biological activities of these toxins were predicted and evaluated. The results showed that only NXH8 was capable of binding to skeletal muscle cells and modulating the activity of nAChRs in nerve–diaphragm preparations. These effects were antagonized by anti-rNXH8 or antielapidic sera. Sequence analysis revealed that the NXH1 toxin possesses eight cysteine residues and four disulfide bonds, while the NXH8 toxin has a primary structure similar to that of non-conventional 3FTx, with an additional disulfide bond on the first loop. These findings add more information related to the structural diversity present within the 3FTx class, while expanding our understanding of the mechanisms of the toxicity of this coralsnake venom and opening new perspectives for developing more effective therapeutic interventions. Full article
(This article belongs to the Section Animal Venoms)
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15 pages, 2692 KiB  
Article
Screening TLR4 Binding Peptide from Naja atra Venom Glands Based on Phage Display
by Runhan Li, Yezhong Tang, Zening Chen and Yang Liu
Toxins 2024, 16(3), 113; https://doi.org/10.3390/toxins16030113 - 24 Feb 2024
Viewed by 2429
Abstract
Toll-like receptor 4 (TLR4) is a crucial inflammatory signaling pathway that can serve as a potential treatment target for various disorders. A number of inhibitors have been developed for the TLR4 pathway, and although no inhibitors have been approved for clinical use, most [...] Read more.
Toll-like receptor 4 (TLR4) is a crucial inflammatory signaling pathway that can serve as a potential treatment target for various disorders. A number of inhibitors have been developed for the TLR4 pathway, and although no inhibitors have been approved for clinical use, most have been screened against the TLR4-MD2 conformation. The venom gland is the organ of venomous snakes that secretes substances that are toxic to other animals. The level of gene transcription in venom glands is different from that in other tissues, includes a large number of biologically active ingredients, and is an important natural resource for the development of new drugs. We constructed a T7 phage display library using the cobra (Naja atra) venom gland from the Guangdong Snake Breeding Plant and performed three rounds of screening with TLR4 as the target, randomly selecting monoclonal phage spots for PCR followed by Sanger sequencing. The obtained sequences were subjected to length analysis, molecular docking, solubility prediction, and stability prediction, and a peptide containing 39 amino acids (NA39) was finally screened out. The BLAST results indicated that NA39 was a sequence in RPL19 (Ribosomal Protein L19). After peptide synthesis, the binding ability of NA39 to TLR4 was verified by the surface plasmon resonance (SPR) technique. In this study, a new peptide that can specifically bind TLR4 was successfully screened from the cobra venom gland cDNA library, further demonstrating the effectiveness of phage display technology in the field of drug discovery. Full article
(This article belongs to the Section Animal Venoms)
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15 pages, 8161 KiB  
Article
Treatment with Cobra Venom Factor Decreases Ischemic Tissue Damage in Mice
by Sharon O. Azubuike-Osu, Amelie Kuhs, Philipp Götz, Anna Faro, Klaus T. Preissner, Christoph Arnholdt and Elisabeth Deindl
Biomedicines 2024, 12(2), 309; https://doi.org/10.3390/biomedicines12020309 - 29 Jan 2024
Cited by 1 | Viewed by 1902
Abstract
Tissue ischemia, caused by the blockage of blood vessels, can result in substantial damage and impaired tissue performance. Information regarding the functional contribution of the complement system in the context of ischemia and angiogenesis is lacking. To investigate the influence of complement activation [...] Read more.
Tissue ischemia, caused by the blockage of blood vessels, can result in substantial damage and impaired tissue performance. Information regarding the functional contribution of the complement system in the context of ischemia and angiogenesis is lacking. To investigate the influence of complement activation and depletion upon femoral artery ligation (FAL), Cobra venom factor (CVF) (that functionally resembles C3b, the activated form of complement component C3) was applied in mice in comparison to control mice. Seven days after induction of muscle ischemia through FAL, gastrocnemius muscles of mice were excised and subjected to (immuno-)histological analyses. H&E and apoptotic cell staining (TUNEL) staining revealed a significant reduction in ischemic tissue damage in CVF-treated mice compared to controls. The control mice, however, exhibited a significantly higher capillary-to-muscle fiber ratio and a higher number of proliferating endothelial cells (CD31+/CD45/BrdU+). The total number of leukocytes (CD45+) substantially decreased in CVF-treated mice versus control mice. Moreover, the CVF-treated group displayed a shift towards the M2-like anti-inflammatory and regenerative macrophage phenotype (CD68+/MRC1+). In conclusion, our findings suggest that treatment with CVF leads to reduced ischemic tissue damage along with decreased leukocyte recruitment but increased numbers of M2-like polarized macrophages, thereby enhancing tissue regeneration, repair, and healing. Full article
(This article belongs to the Special Issue Biomedicines: 10th Anniversary)
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12 pages, 3698 KiB  
Article
Proteomic Investigation of Cape Cobra (Naja nivea) Venom Reveals First Evidence of Quaternary Protein Structures
by Lewis O. McFarlane and Tara L. Pukala
Toxins 2024, 16(2), 63; https://doi.org/10.3390/toxins16020063 - 23 Jan 2024
Cited by 5 | Viewed by 2462
Abstract
Naja nivea (N. nivea) is classed as a category one snake by the World Health Organization since its envenomation causes high levels of mortality and disability annually. Despite this, there has been little research into the venom composition of N. nivea, [...] Read more.
Naja nivea (N. nivea) is classed as a category one snake by the World Health Organization since its envenomation causes high levels of mortality and disability annually. Despite this, there has been little research into the venom composition of N. nivea, with only one full venom proteome published to date. Our current study separated N. nivea venom using size exclusion chromatography before utilizing a traditional bottom-up proteomics approach to unravel the composition of the venom proteome. As expected by its clinical presentation, N. nivea venom was found to consist mainly of neurotoxins, with three-finger toxins (3FTx), making up 76.01% of the total venom proteome. Additionally, cysteine-rich secretory proteins (CRISPs), vespryns (VESPs), cobra venom factors (CVFs), 5′-nucleotidases (5′NUCs), nerve growth factors (NGFs), phospholipase A2s (PLA2), acetylcholinesterases (AChEs), Kunitz-type serine protease inhibitor (KUN), phosphodiesterases (PDEs), L-amino acid oxidases (LAAOs), hydrolases (HYDs), snake venom metalloproteinases (SVMPs), and snake venom serine protease (SVSP) toxins were also identified in decreasing order of abundance. Interestingly, contrary to previous reports, we find PLA2 toxins in N. nivea venom. This highlights the importance of repeatedly profiling the venom of the same species to account for intra-species variation. Additionally, we report the first evidence of covalent protein complexes in N. nivea venom, which likely contribute to the potency of this venom. Full article
(This article belongs to the Special Issue Animal Venoms: Proteomics, Biochemical Activities and Application)
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19 pages, 61416 KiB  
Article
Identification of ZmBK2 Gene Variation Involved in Regulating Maize Brittleness
by Wei Xu, Yan Zhao, Qingzhi Liu, Yuqiang Diao, Qingkang Wang, Jiamin Yu, Enjun Jiang, Yongzhong Zhang and Baoshen Liu
Genes 2023, 14(6), 1126; https://doi.org/10.3390/genes14061126 - 23 May 2023
Viewed by 2113
Abstract
Maize stalk strength is a crucial agronomic trait that affects lodging resistance. We used map-based cloning and allelic tests to identify a maize mutant associated with decreased stalk strength and confirmed that the mutated gene, ZmBK2, is a homolog of Arabidopsis AtCOBL4 [...] Read more.
Maize stalk strength is a crucial agronomic trait that affects lodging resistance. We used map-based cloning and allelic tests to identify a maize mutant associated with decreased stalk strength and confirmed that the mutated gene, ZmBK2, is a homolog of Arabidopsis AtCOBL4, which encodes a COBRA-like glycosylphosphatidylinositol (GPI)-anchored protein. The bk2 mutant exhibited lower cellulose content and whole-plant brittleness. Microscopic observations showed that sclerenchymatous cells were reduced in number and had thinner cell walls, suggesting that ZmBK2 affects the development of cell walls. Transcriptome sequencing of differentially expressed genes in the leaves and stalks revealed substantial changes in the genes associated with cell wall development. We constructed a cell wall regulatory network using these differentially expressed genes, which revealed that abnormal cellulose synthesis may be a reason for brittleness. These results reinforce our understanding of cell wall development and provide a foundation for studying the mechanisms underlying maize lodging resistance. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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15 pages, 4056 KiB  
Article
Genome-Wide Analysis and Abiotic Stress-Responsive Patterns of COBRA-like Gene Family in Liriodendron chinense
by Chen Qiu, Jinhui Chen, Weihuang Wu, Bojun Liao, Xueyan Zheng, Yong Li, Jing Huang, Jisen Shi and Zhaodong Hao
Plants 2023, 12(8), 1616; https://doi.org/10.3390/plants12081616 - 11 Apr 2023
Cited by 6 | Viewed by 2967
Abstract
The COBRA gene encodes a plant-specific glycosylphosphatidylinositol (GPI)-anchored protein (GAP), which plays an important role in cell wall cellulose deposition. In this study, a total of 7 COBRA-like (COBL) genes were identified in the genome of the rare and endangered woody [...] Read more.
The COBRA gene encodes a plant-specific glycosylphosphatidylinositol (GPI)-anchored protein (GAP), which plays an important role in cell wall cellulose deposition. In this study, a total of 7 COBRA-like (COBL) genes were identified in the genome of the rare and endangered woody plant Liriodendron chinense (L. chinense). Phylogenetic analysis showed that these LcCOBL genes can be divided into two subfamilies, i.e., SF I and II. In the conserved motif analysis of two subfamilies, SF I contained 10 predicted motifs, while SF II contained 4–6 motifs. The tissue-specific expression patterns showed that LcCOBL5 was highly expressed in the phloem and xylem, indicating its potential role in cellulose biosynthesis. In addition, the cis-element analysis and abiotic stress transcriptomes showed that three LcCOBLs, LcCOBL3, LcCOBL4 and LcCOBL5, transcriptionally responded to abiotic stresses, including cold, drought and heat stress. In particular, the quantitative reverse-transcription PCR (qRT-PCR) analysis further confirmed that the LcCOBL3 gene was significantly upregulated in response to cold stress and peaked at 24–48 h, hinting at its potential role in the mechanism of cold resistance in L. chinense. Moreover, GFP-fused LcCOBL2, LcCOBL4 and LcCOBL5 were found to be localized in the cytomembrane. In summary, we expect these results to be beneficial for research on both the functions of LcCOBL genes and resistance breeding in L. chinense. Full article
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13 pages, 3172 KiB  
Article
Membrane-Disrupting Activity of Cobra Cytotoxins Is Determined by Configuration of the N-Terminal Loop
by Peter V. Dubovskii, Anastasia A. Ignatova, Anna S. Alekseeva, Vladislav G. Starkov, Ivan A. Boldyrev, Alexey V. Feofanov and Yuri N. Utkin
Toxins 2023, 15(1), 6; https://doi.org/10.3390/toxins15010006 - 20 Dec 2022
Cited by 8 | Viewed by 2737
Abstract
In aqueous solutions, cobra cytotoxins (CTX), three-finger folded proteins, exhibit conformational equilibrium between conformers with either cis or trans peptide bonds in the N-terminal loop (loop-I). The equilibrium is shifted to the cis form in toxins with a pair of adjacent Pro residues [...] Read more.
In aqueous solutions, cobra cytotoxins (CTX), three-finger folded proteins, exhibit conformational equilibrium between conformers with either cis or trans peptide bonds in the N-terminal loop (loop-I). The equilibrium is shifted to the cis form in toxins with a pair of adjacent Pro residues in this loop. It is known that CTX with a single Pro residue in loop-I and a cis peptide bond do not interact with lipid membranes. Thus, if a cis peptide bond is present in loop-I, as in a Pro-Pro containing CTX, this should weaken its lipid interactions and likely cytotoxic activities. To test this, we have isolated seven CTX from Naja naja and N. haje cobra venoms. Antibacterial and cytotoxic activities of these CTX, as well as their capability to induce calcein leakage from phospholipid liposomes, were evaluated. We have found that CTX with a Pro-Pro peptide bond indeed exhibit attenuated membrane-perturbing activity in model membranes and lower cytotoxic/antibacterial activity compared to their counterparts with a single Pro residue in loop-I. Full article
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