Search Results (196)

The present study characterizes the complete mitochondrial genome of Potamotrygon leopoldi, commonly referred to as the “white blotched stingray”, a member of the Potamotrygonidae family that are a group of stingrays that live exclusively in freshwater environments. Potamotrygon leopoldi, endemic to the Xingu River in the Amazon region, are exploited by commercial fisheries for food and commonly exploited by the ornamental industry, and this has a significant impact on the populations. Here, newly assembled PacBio long-read sequencing assesses the complete mitogenome of P. leopoldi and performs a comparative investigation into the evolutionary connections to other extant taxa of elasmobranchs. The mitogenome has 17,504 bp, containing 13 protein-coding, 22 tRNA, and 2 rRNA genes. The mitogenome comprises A: 32.32%, T: 24.41%, C: 12.84%, and G: 30.42%, with an AT content of 56.73%. The values of AT and GC skewness were 0.13 and −0.40, respectively. Our phylogenetic analyses with mitogenome sequences of 40 elasmobranch species support the monophyly for the Potamotrygonidae family and indicate a close relationship to the Dasyatidae family and a sister relationship with Potamotrygon orbignyi and Potamotrygon falkneri. We also detected various amino acid sites in positive selection exclusively in P. leopoldi. This extensive comparative mitogenomic investigation offers novel and significant insights into the evolutionary lineage of neotropical freshwater stingrays and their closely related taxa. It is an indispensable resource for facilitating ongoing and prospective investigations into the molecular evolution of elasmobranchs. Full article

Lichens, complex symbiotic associations between fungi and photosynthetic partners, are widespread in terrestrial ecosystems but remain poorly studied in tropical dry forests (TDFs). This review synthesizes current knowledge on the diversity, ecological roles, adaptive traits, and ethnobotanical uses of lichens in TDFs, with a focus on the Neotropics. As most lichens discussed here are crustose species that inhabit tree bark, this paper also provides a thoughtful review of the origin, distribution, and highly heterogeneous floristic composition of TDFs, which directly shape lichen habitats. It discusses how lichens have evolved to cope with seasonal water stress, emphasizing desiccation tolerance as a key feature of the symbiosis. This review also explores lichen community composition, interactions with host trees, microclimatic conditions, herbivory, and soil crust formation. Despite evidence of high species richness, functional diversity, and ecological importance, lichens in TDFs are largely overlooked in conservation strategies. Moreover, several regions remain vastly understudied, and many species likely remain undescribed. Ethnolichenological practices, though scarce, underscore the cultural and medicinal value of these organisms. Given the high rates of habitat loss and endemism in TDFs, there is a pressing need to expand research on lichen diversity and to investigate the evolutionary origins of their survival strategies. The conservation of these lichens is inseparable from the conservation of TDFs themselves. Understanding how lichens adapt to the harsh and variable conditions of TDFs is essential for integrating them into biodiversity conservation and ecosystem restoration frameworks. Full article

Hydrometridae (Hemiptera: Heteroptera: Gerromorpha) is represented in Brazil by 17 species, belonging to six genera and three subfamilies: Veliometra Andersen, 1977 (Heterocleptinae); Bacillometra Esaki, 1927, Cephalometra Polhemus & Ferreira, 2018, Hydrometra Latreille, 1797, Spelaeometra Polhemus & Ferreira, 2018 (Hydrometrinae); and Limnobatodes Hussey, 1925 (Limnobatodinae). Hydrometra is the richest genus in the country, with 11 recorded species. Here, we describe H. perobas Cordeiro, Floriano & Moreira, sp. nov., collected in the buffer zone of Reserva Biológica das Perobas, a protected area within the Atlantic Forest biome, state of Paraná, southern Brazil. We also provide a revised key to the species of Hydrometra recorded from Brazil. Full article

Woodcreepers (Dendrocolaptinae) constitute a subfamily of Neotropical passerines currently recognized as a monophyletic group within Furnariidae. Although Furnariidae is one of the most diverse avian families in the Neotropics, cytogenetic data remain scarce. In this study, we present the first cytogenetic analysis of Lepidocolaptes falcinellus using conventional (Ag-NOR, C-banding) and molecular (hybridization in situ fluorescence—FISH with telomeric and 18S rDNA probes) approaches. The species exhibits a karyotype with 2n = 80 chromosomes, predominantly acrocentric macrochromosomes, and heterochromatin restricted to centromeric regions. Telomeric repeats were confined to terminal regions, and 18S rDNA sites (NORs) were detected on the short arm of chromosome pair 1. This pattern, also observed in other Dendrocolaptinae species, contrasts with the ancestral avian condition of NORs on microchromosomes, suggesting a derived, lineage-specific chromosomal signature. These results support the cytogenetic cohesion of Dendrocolaptinae and reinforce the potential of NOR localization as a phylogenetic marker within the group. Our findings contribute novel cytotaxonomic data that enhance the understanding of chromosomal evolution and systematics in Furnariidae. Full article

The closely related Naupactini species Naupactus leucoloma, Naupactus peregrinus, and Naupactus minor—collectively known as “white-fringed weevils”—form a monophyletic group within the N. leucoloma species group. Mostly parthenogenetic, a few sexually reproducing populations of both N. leucoloma and N. peregrinus occur in their native ranges (Argentinian Mesopotamian region), where they overlap. In 2013, after several decades during which only females had been recorded, a few males potentially belonging to these species were discovered. To clarify their taxonomic identity and understand the group’s evolutionary dynamics, we analyzed their mitochondrial and nuclear genetic markers to assess their genetic variation distribution and infer their phylogenetic relationships. Molecular phylogenetic analyses revealed that these males constitute an independently evolving lineage, whereas morphological comparisons produced inconclusive results. Statistical tests confirmed introgression between these unidentified males and N. leucoloma. These findings uncover unexpected levels of genetic divergence within this group of Neotropical weevils. Full article

Influenza A virus (IAV) poses a significant threat to animal and public health due to its wide host range and potential for interspecies transmission. This study aimed to conduct a comprehensive survey of IAV in a wide range of wildlife in the Orinoco flooded savannas of Colombia, a region of high biodiversity and a strategic location for monitoring viral transmission. Sampling was conducted during both dry and rainy seasons in two localities. ELISA and qPCR targeted 2028 individuals from 173 bird, mammal, and reptile species, 124 of them without previously published reports. There were positive results for 54 species, with 34 representing first-time world reports. Of the qPCR, 13.4% were positive from birds, and 2.9% were from mammals. Seropositivity was identified in 5.7% of birds, 2.7% of mammals, and 1.3% of reptiles. These findings underscore the potential role of these diverse species as reservoirs or incidental hosts in the transmission cycle of IAV, emphasizing the need for expanded research on less-studied taxa and their ecological interactions. The results also contribute to our understanding of the epidemiology of IAV in the Neotropics and can inform future surveillance and mitigation strategies. Full article

DNA metabarcoding is a powerful biodiversity monitoring tool, enabling simultaneous assessments of diverse biological communities. However, its accuracy depends on the reliability of reference databases that assign taxonomic identities to obtained sequences. Here we provide a DNA barcode dataset for aquatic fauna of the Panama Canal, a region that connects the Western Atlantic and Eastern Pacific oceans. This unique setting creates opportunities for trans-oceanic dispersal while acting as a modern physical dispersal barrier for some terrestrial organisms. We sequenced 852 specimens from a diverse array of taxa (e.g., fishes, zooplankton, mollusks, arthropods, reptiles, birds, and mammals) using COI, and in some cases, 12S and 16S barcodes. These data were collected for a variety of studies, many of which have sought to understand recent changes in aquatic communities in the Panama Canal. The DNA barcodes presented here are all from captured specimens, which confirms their presence in Panama and, in many cases, inside the Panama Canal. Both native and introduced taxa are included. This dataset represents a valuable resource for environmental DNA (eDNA) work in the Panama Canal region and across the Neotropics aimed at monitoring ecosystem health, tracking non-native and potentially invasive species, and understanding the ecology and distribution of these freshwater and euryhaline taxa. Full article

The wolf fish Hoplias malabaricus is a Neotropical species characterized by remarkable karyotypic diversity, including seven karyomorphs (KarA-G) with distinct sex chromosome systems. This study investigated the homologous XY (KarF) and XY₁Y₂ (KarG) sex chromosome systems present in this species by integrating cytogenetics and genomics to examine sex chromosomes’ composition through characterization of repeatome (satellite DNA and transposable elements) and sex-linked markers. Our analysis indicated that both karyomorphs are little differentiated in their sex chromosomes content revealed by satDNA mapping and putative sex-linked markers. Both repeatomes were mostly composed of transposable elements, but neither intra- (male versus female) nor interspecific (KarF x KarG) variations were found. In both systems, we demonstrated the occurrence of sex-specific sequences probably located on the non-recombining region of the Y chromosome supported by the accumulation of sex-specific haplotypes of HmfSat10-28/HmgSat31-28. This investigation offered valuable insights by highlighting the composition of homologous XY and XY₁Y₂ multiple sex chromosomes. Although homologous, the large Y chromosome in KarF corresponds to two separate linkage groups (Y₁ and Y₂) in KarG implying a specific meiotic arrangement involving the X chromosome in a meiotic trivalent chain. This scenario likely influenced recombination rates and, as a result, the genomic composition of these chromosomes. Full article

Mangrove-associated fungi represent a diverse but understudied group of eukaryotic organisms, especially in the Neotropics. The Colombian Pacific region, with approximately 1300 km of coastline covered with 194,880 ha of mangrove forests that remain largely unexplored for macrofungal diversity, is recognized as a global biodiversity hotspot. This study aimed to catalog the macrofungi associated with mangrove ecosystems in Colombia, integrating morphological characterization and molecular phylogenetics, focusing on three Valle del Cauca Pacific coast localities. A total of 81 specimens were collected from both living trees and decaying wood. Detailed macroscopic and microscopic analyses were conducted, and DNA sequences from two ribosomal DNA barcode regions (ITS and LSU) were generated for 43 specimens. Three new species—Neohypochnicium manglarense, Phlebiopsis colombiana, and Porogramme bononiae—were documented. In addition, eight species were reported as new records for both Colombia and mangrove ecosystems, including Microporus affinis, Paramarasmius palmivorus, Phlebiopsis flavidoalba, Porogramme brasiliensis, Resinicium grandisporum, Trametes ellipsospora, T. menziesii, and T. polyzona. Although previously recorded in Colombian terrestrial ecosystems, Lentinus scleropus and Oudemansiella platensis are globally reported here for the first time from mangrove habitats. Furthermore, Fomitopsis nivosella and Punctularia strigosozonata were documented for the first time in Colombia. This study addresses the first exploration of mangrove-associated macrofungi in the country and provides new insights into the hidden fungal diversity and potential of mangrove ecosystems as a latent niche for basidiomycete dispersal along Colombia’s Pacific coast. Full article

Kempnyia Klapálek, 1914 (Plecoptera: Perlidae) is the only genus within its family endemic to Brazil, being present in the Atlantic Forest and sections of the Cerrado. Taxonomic knowledge of the genus is incomplete, especially for nymphs. An integrative approach to the description of species and semaphoronts is essential for further studies. We describe a new species of Kempnyia based on morphological and molecular data, associate and describe the nymphs of both the new species and Kempnyia umbrina Froehlich, 1988, as well as expand its distribution and correct past mistakes in identification of K. umbrina. Specimens were identified morphologically and sequenced for the barcode region of the cytochrome oxidase subunit I (COI) mitochondrial gene, resulting in eight new sequences for three species of the genus. Both morphological and molecular analyses revealed a new species, Kempnyia krenaki sp. nov. Its nymph and that of K. umbrina are also described. With our additions, the number of known Kempnyia species rises to 41, of which 26 have COI sequences available in GenBank. Although only 11 nymphs have been associated and described for the genus so far, as the Kempnyia sequence database continues to grow, studies associating and describing nymphs will become more common, gradually reducing the Haeckelian deficit. Full article

As close relatives of the vertebrates, cephalochordates have been the focus of significant evo–devo and genomic research; however, their biodiversity and systematics remain poorly known. In particular, few species have been documented in the eastern Pacific and there are few published observations for this region. Using sequences from COI and 16S DNA barcode markers and morphological observations from 16 animals collected incidentally during other studies, we document the presence of three species of amphioxus on the Pacific coast and one from the Caribbean coast of Panama. The high genetic diversity recovered from so few samples suggests that the application of molecular taxonomy to neotropical amphioxus would likely uncover additional species and could help to more easily delineate morphological differences among taxa. Full article

Effective sustainable fish farming necessitates enhanced models that incorporate environmental variability and contemporary monitoring methods. This research presents an innovative framework for assessing and modeling the environmental carrying capacity based on phosphorus (ECCp) in tropical and neotropical lakes and reservoirs. The model evaluates phosphorus waste from tilapia farming (Oreochromis niloticus) under diverse climatic conditions and production scenarios in cage systems. Using bioenergetic modeling and Monte Carlo simulations, we estimated phosphorus retention in fish and maximum production limits across different temperatures (21 °C, 25 °C, 29 °C) and dietary phosphorus concentrations (0.8%, 1.2%, 2.1%) in Brazil’s Chavantes reservoir. Results indicated that phosphorus retention diminished with higher dietary phosphorus and increased temperatures, ranging from 51% (0.8% P) to 20% (2.1% P). Phosphorus discharge ranged from 3.3 to 20.5 kg/ton of fish produced. The ECCp model forecasted an allowable production of roughly 40 tons per year at full operational capacity, reflecting a 41% increase compared to current regulations. The model’s accuracy (96%) surpassed that of traditional regulatory frameworks, which rely on static parameters, emphasizing the shortcomings of existing practices. The findings promote enhanced modeling strategies, sophisticated monitoring, adaptive management, and revised public policies to mitigate phosphorus emissions and support sustainable aquaculture in tropical and neotropical regions. Full article

The nine-banded armadillo, Dasypus novemcinctus, is one of only two species of armadillo found in Mexico. Among the ectoparasites reported on this mammal are ticks of the genus Amblyomma. Between December 2022 and April 2024, 52 ticks of different developmental stages (females, males, and nymphs) were collected from five D. novemcinctus. All ticks were morphologically identified as A. auricularium. This study reports for the first time the presence of this tick species in the Municipality of Santiago Llano Grande, Oaxaca. Full article

Erotylidae, or pleasing fungus beetles, are a morphologically diverse lineage of Coleoptera notable for the variety of colors and patterns present on their dorsal surface. This study begins the characterization of this diversity and discusses patterns around coloration within Erotylinae. Using spectrophotometer data, we investigated the frequency of certain color motifs across erotyline tribes and discuss geographic patterns in these color motifs. The most frequently observed colors within Erotylinae are brown/black with orange/red maculations in the case of bicolored taxa. In terms of type of maculations, stripes were the most common pattern observed. When summarizing the diversity across major geographic areas, the Neotropical and Indomalay regions displayed the most color variation, followed by the Australasian region. Full article

Agraz (Vaccinium meridionale Swartz) is a shrub native to the Neotropical region of South America, including Colombia, Ecuador, Venezuela, and Peru. Known for its edible fruits valued for their nutritional, nutraceutical, and medicinal properties, the species remains underexplored despite its potential. This research aimed to investigate the genetic diversity and population structure of agraz in Colombia, focusing on native individuals from Santander and commercial individuals from Boyacá and Cundinamarca, providing insights that can support conservation and genetic improvement efforts. Methods: In this study, genotyping by sequencing (GBS) was used to analyze genetic variation and population structure in V. meridionale. The sequencing data were aligned to the V. corymbosum cv. Draper v1.0 reference genome. The obtained single-nucleotide polymorphisms (SNPs) were employed to evaluate genetic diversity, population differentiation, and inbreeding coefficients, with measures such as expected heterozygosity and F-statistics providing insights into population structure and genetic composition across regions. Results: A total of 12,910 SNPs were obtained, and the results revealed moderate genetic diversity within the agraz populations, characterized by an expected heterozygosity (He) of 0.3586. A negative Fis value indicated an excess of heterozygosity and low genetic differentiation among the sampled regions. Population structure analysis identified three distinct subpopulations, with Subpopulation 3 exhibiting the most unique genetic composition. Conclusions: This study provides the first genetic diversity analysis of V. meridionale in Colombia using the GBS approach. The findings contribute to the understanding of the species’ genetic variability and offer valuable information for conservation strategies, genetic improvement and breeding programs to enhance its agricultural potential and ensure the sustainable utilization of agraz resources. Full article