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Keywords = anaerobic fermentation (AF)

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23 pages, 3158 KB  
Article
Analysis of Changes in Taste Characteristics of Coffee at Different Primary Processing Methods Using E-Tongue, Untargeted Metabolomics and WGCNA
by Ying Liang, Yaqian Yuan, Jia Wang, Wenxue Chen, Weijun Chen, Qiuping Zhong, Jianfei Pei, Chun Chen, Xiong Fu, Rongrong He and Haiming Chen
Foods 2026, 15(9), 1475; https://doi.org/10.3390/foods15091475 - 23 Apr 2026
Viewed by 419
Abstract
The primary processing shapes the taste characteristics of coffee beans, while the regulation pathways remain unclear. Coffee beans processed by five methods—dry processing (DP), wet processing (WP), red honey (RH), black honey (BH) and anaerobic fermentation (AF)—were evaluated using electronic tongue analysis, sensory [...] Read more.
The primary processing shapes the taste characteristics of coffee beans, while the regulation pathways remain unclear. Coffee beans processed by five methods—dry processing (DP), wet processing (WP), red honey (RH), black honey (BH) and anaerobic fermentation (AF)—were evaluated using electronic tongue analysis, sensory evaluation, and untargeted metabolomics. Sensory evaluation scores for mouthfeel, balance, and overall were higher in BH and AF. Conversely, the WP and DP exhibited heightened bitterness and astringency responses on the electronic tongue sensors, particularly for the former. The multigroup metabolomic comparison identified 808 DMs, and WGCNA revealed eight sensory-related modules containing 467 hub metabolites, mainly amino acids and derivatives, organic acids, alkaloids, and phenolic acids. KEGG analysis demonstrated that pathways such as caffeine metabolism and glycerophospholipid metabolism were the main pathways responsible for the metabolic differences. Further correlation analysis revealed potential flavor components closely associated with key taste characteristics. 1,3,4,5-tetrahydroxycyclohexanecarboxylic acid and Tyr demonstrated positive associations with bitterness, while TPC, TFC, Gly, and Met exhibited negative correlations with bitterness and astringency. Glu demonstrated a positive correlation with umami. These findings elucidate the material basis by which the primary processing modulates non-volatile compounds and taste perception, offering new insights into enhancing coffee quality. Full article
(This article belongs to the Section Foodomics)
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35 pages, 2131 KB  
Review
Harnessing Bioelectrochemical and Anaerobic Systems for the Degradation of Bioplastics: Application Potential and Future Directions
by Shuyao Wang, Abid Hussain, Xunchang Fei, Kaushik Venkiteshwaran and Vijaya Raghavan
Fermentation 2025, 11(11), 610; https://doi.org/10.3390/fermentation11110610 - 27 Oct 2025
Cited by 1 | Viewed by 2500
Abstract
As the environmental burden of traditional plastics continues to grow, bioplastics (BPs) have emerged as a promising alternative due to their renewable origins and potential for biodegradability. However, the most popular anaerobic systems (ASs)—anaerobic digestion (AD), acidogenic fermentation (AF), and enzyme hydrolysis (EH)—for [...] Read more.
As the environmental burden of traditional plastics continues to grow, bioplastics (BPs) have emerged as a promising alternative due to their renewable origins and potential for biodegradability. However, the most popular anaerobic systems (ASs)—anaerobic digestion (AD), acidogenic fermentation (AF), and enzyme hydrolysis (EH)—for BPs degradation still face many challenges, e.g., low degradation efficiency, process instability, etc. As a sustainable clean energy technology, bioelectrochemical systems (BESs) have demonstrated strong potential in the treatment of complex organic waste when integrated with ASs. Nevertheless, research on the synergistic degradation of BPs using BES-ASs remains relatively limited. This review systematically summarizes commonly used anaerobic degradation methods for BPs, along with their advantages and limitations, and highlights the BES-AS as an innovative strategy to enhance BPs degradation efficiency. BESs can accelerate the decomposition of complex polymer structures through the activity of electroactive microorganisms, while also offering benefits such as energy recovery and real-time process monitoring. When coupled with anaerobic digestion, the BES-AS demonstrates significant synergistic effects, improving degradation efficiency and promoting the production of high-value-added products such as volatile fatty acids (VFAs) and biogas, thereby showing great application potential. This review outlines current research progress, identifies key knowledge gaps in mechanism elucidation, system design, source recovery, etc., and proposes future research directions. These include system optimization, microbial community engineering, development of advanced electrode materials, and omics-based mechanistic studies. Advancing multidisciplinary integration is expected to accelerate the practical application of BES-ASs in BP waste management and contribute to achieving the goals of sustainability, efficiency, and circular utilization. Full article
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13 pages, 785 KB  
Article
Selective Lactic Acid Production via Thermophilic Anaerobic Fermentation
by Claudia Chao-Reyes, Rudolphus Antonius Timmers, Ahmed Mahdy, Silvia Greses and Cristina González-Fernández
Water 2025, 17(15), 2183; https://doi.org/10.3390/w17152183 - 22 Jul 2025
Cited by 2 | Viewed by 1318
Abstract
The combined effect of temperature-adapted inocula and anaerobic fermentation (AF) settings (pH 5.1 and 50 °C) were assessed to produce short-chain carboxylates (SCCs). In this study, the AF of carrot pulp was investigated using inocula adapted at different temperatures (25, 35, and 55 [...] Read more.
The combined effect of temperature-adapted inocula and anaerobic fermentation (AF) settings (pH 5.1 and 50 °C) were assessed to produce short-chain carboxylates (SCCs). In this study, the AF of carrot pulp was investigated using inocula adapted at different temperatures (25, 35, and 55 °C) with the aim of shifting the microbiome activity from biogas to SCC production. The highest SCC content (17.2 g COD L−1), and bioconversion (26.1%) and acidification efficiency (56.3%) were achieved with 35 °C-adapted inoculum. Lactic acid production prevailed in all reactors, demonstrating a high selectivity in SCC production. Both the microbial richness and diversity sharply diminished in the 35 °C and 55 °C operated reactors, with Firmicutes phylum identified as key players of the lactic acid production in AF. The results demonstrated that the operating temperature played a key role in shaping the microbial structure of inocula, leading to different process performances and highlighting thermophilic AF as a feasible process to produce lactic acid. Full article
(This article belongs to the Special Issue Innovations in Anaerobic Digestion Technology)
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20 pages, 4165 KB  
Article
Bioremediation of Aflatoxin B1 by Meyerozyma guilliermondii AF01 in Peanut Meal via Solid-State Fermentation
by Wan Zhang, Changpo Sun, Wei Wang and Zhongjie Zhang
Toxins 2024, 16(7), 305; https://doi.org/10.3390/toxins16070305 - 4 Jul 2024
Cited by 7 | Viewed by 2731
Abstract
The use of microorganisms to manage aflatoxin contamination is a gentle and effective approach. The aim of this study was to test the removal of AFB1 from AFB1-contaminated peanut meal by a strain of Meyerozyma guilliermondii AF01 screened by the [...] Read more.
The use of microorganisms to manage aflatoxin contamination is a gentle and effective approach. The aim of this study was to test the removal of AFB1 from AFB1-contaminated peanut meal by a strain of Meyerozyma guilliermondii AF01 screened by the authors and to optimize the conditions of the biocontrol. A regression model with the removal ratio of AFB1 as the response value was established by means of single-factor and response surface experiments. It was determined that the optimal conditions for the removal of AFB1 from peanut meal by AF01 were 75 h at 29 °C under the natural pH, with an inoculum of 5.5%; the removal ratio of AFB1 reached 69.31%. The results of simulating solid-state fermentation in production using shallow pans and fermentation bags showed that the removal ratio of AFB1 was 68.85% and 70.31% in the scaled-up experiments, respectively. This indicated that AF01 had strong adaptability to the environment with facultative anaerobic fermentation detoxification ability. The removal ratio of AFB1 showed a positive correlation with the growth of AF01, and there were no significant changes in the appearance and quality of the peanut meal after fermentation. This indicated that AF01 had the potential to be used in practical production. Full article
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14 pages, 1386 KB  
Article
Hydraulic Retention Time as an Operational Tool for the Production of Short-Chain Carboxylates via Anaerobic Fermentation of Carbohydrate-Rich Waste
by Kaoutar Aboudi, Silvia Greses and Cristina González-Fernández
Molecules 2023, 28(18), 6635; https://doi.org/10.3390/molecules28186635 - 15 Sep 2023
Cited by 16 | Viewed by 3448
Abstract
The carboxylate platform is a sustainable and cost-effective way to valorize wastes into biochemicals that replace those of fossil origin. Short-chain fatty acids (SCFAs) are intermediates generated during anaerobic fermentation (AF) and are considered high-value-added biochemicals among carboxylates. This investigation aimed to produce [...] Read more.
The carboxylate platform is a sustainable and cost-effective way to valorize wastes into biochemicals that replace those of fossil origin. Short-chain fatty acids (SCFAs) are intermediates generated during anaerobic fermentation (AF) and are considered high-value-added biochemicals among carboxylates. This investigation aimed to produce SCFAs through the AF of sugar beet molasses at 25 °C and semi-continuous feeding mode in completely stirred tank reactors. A particular focus was devoted to the role of hydraulic retention time (HRT) variation in SCFAs production and distribution profile. The highest SCFAs concentration (44.1 ± 2.3 gCOD/L) was reached at the HRT of 30 days. Caproic acid accounted for 32.5–35.5% (COD-concentration basis) at the long HRTs of 20 and 30 days due to the carbon chain elongation of shorter carboxylic acids. The findings of this study proved that HRT could be used to steer the anaerobic process toward the targeted SCFAs for specific uses. Furthermore, the successful operation at low-temperature conditions (i.e., 25 °C) makes the process economically promising. Full article
(This article belongs to the Topic Biomass Transformation: Sustainable Development)
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19 pages, 5002 KB  
Article
Modelling the Effect of Water Removal by Reverse Osmosis on the Distillation of Mixtures of Short-Chain Organic Acids from Anaerobic Fermentation
by Serena Simonetti and Davide Dionisi
Processes 2023, 11(8), 2362; https://doi.org/10.3390/pr11082362 - 5 Aug 2023
Cited by 2 | Viewed by 2566
Abstract
Anaerobic fermentation (AF) to produce sustainable short-chain organic acids (SCOAs) has found no commercial application so far. This is due to several limitations, including the high energy consumption of the SCOAs’ separation from water by distillation. This study used AspenPlus simulations to investigate [...] Read more.
Anaerobic fermentation (AF) to produce sustainable short-chain organic acids (SCOAs) has found no commercial application so far. This is due to several limitations, including the high energy consumption of the SCOAs’ separation from water by distillation. This study used AspenPlus simulations to investigate the benefits of reverse osmosis (RO) to remove water and concentrate the SCOAs from AF before their separation by distillation. The effect of RO on distillation reflux ratio, heat energy requirements, column diameter and equipment costs was simulated for the processing of model SCOA-containing streams, representing AF effluents. A total of 90 simulations were carried out, investigating three different SCOA compositions, corresponding to different ratios of lactic, acetic and propionic acids, three different concentrations of the total SCOAs (10, 50, 100 g/kg in the stream entering RO) and different extents of water removal by RO. RO brought a reduction in the distillation reboilers’ duty of up to more than 90%, with a reduction of column diameter of up to more than 70%. The total energy consumption, equipment cost and NPV (net present value) of the RO plus distillation process were in all cases more favourable than for the process without membranes. Full article
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24 pages, 2384 KB  
Review
Bioprocessing of Waste for Renewable Chemicals and Fuels to Promote Bioeconomy
by Gayathri Priya Iragavarapu, Syed Shahed Imam, Omprakash Sarkar, Srinivasula Venkata Mohan, Young-Cheol Chang, Motakatla Venkateswar Reddy, Sang-Hyoun Kim and Naresh Kumar Amradi
Energies 2023, 16(9), 3873; https://doi.org/10.3390/en16093873 - 3 May 2023
Cited by 22 | Viewed by 5861
Abstract
The world’s rising energy needs, and the depletion of fossil resources demand a shift from fossil-based feedstocks to organic waste to develop a competitive, resource-efficient, and low-carbon sustainable economy in the long run. It is well known that the production of fuels and [...] Read more.
The world’s rising energy needs, and the depletion of fossil resources demand a shift from fossil-based feedstocks to organic waste to develop a competitive, resource-efficient, and low-carbon sustainable economy in the long run. It is well known that the production of fuels and chemicals via chemical routes is advantageous because it is a well-established technology with low production costs. However, the use of toxic/environmentally harmful and expensive catalysts generates toxic intermediates, making the process unsustainable. Alternatively, utilization of renewable resources for bioprocessing with a multi-product approach that aligns novel integration improves resource utilization and contributes to the “green economy”. The present review discusses organic waste bioprocessing through the anaerobic fermentation (AF) process to produce biohydrogen (H2), biomethane (CH4), volatile fatty acids (VFAs) and medium chain fatty acids (MCFA). Furthermore, the roles of photosynthetic bacteria and microalgae for biofuel production are discussed. In addition, a roadmap to create a fermentative biorefinery approach in the framework of an AF-integrated bioprocessing format is deliberated, along with limitations and future scope. This novel bioprocessing approach significantly contributes to promoting the circular bioeconomy by launching complete carbon turnover practices in accordance with sustainable development goals. Full article
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15 pages, 1329 KB  
Article
Bioaugmentation Strategies for Enhancing Methane Production from Shrimp Processing Waste through Anaerobic Digestion
by Valentina Mazzurco Miritana, Alessia Gaetani, Antonella Signorini, Antonella Marone and Giulia Massini
Fermentation 2023, 9(4), 401; https://doi.org/10.3390/fermentation9040401 - 20 Apr 2023
Cited by 8 | Viewed by 4101
Abstract
Bioaugmentation strategies were tested to improve energetic valorization of shrimp processing waste (SPW) by anaerobic digestion (AD). A fermenting bacteria pool (F210) obtained from coastal lake sediments and two strains of anaerobic fungi (AF), Orpynomyces sp. and Neocallimastix sp., commonly found as components [...] Read more.
Bioaugmentation strategies were tested to improve energetic valorization of shrimp processing waste (SPW) by anaerobic digestion (AD). A fermenting bacteria pool (F210) obtained from coastal lake sediments and two strains of anaerobic fungi (AF), Orpynomyces sp. and Neocallimastix sp., commonly found as components of microbial community of AD plants, were used with the aim of improving the fermentative and hydrolytic phases of AD, respectively. The experiment was carried out by testing single bioaugmentation at an SPW concentration of 6.5 gVS L−1 and combined bioaugmentation at three SPW concentrations (6.5, 9.7 and 13.0 gVS L−1, respectively), in batch mode and mesophilic conditions. Cumulative CH4 productions were higher in the combined bioaugmentation tests and increased in line with SPW concentration. The F210 played a key role in enhancing CH4 production while no effect was attributable to the addition of AFs. The CH4 content (%) in the biogas increased with substrate concentrations, with average values of 67, 70, and 73%, respectively. Microbial community abundance increased in line with the SPW concentration and the acetoclastic Methanosarcina predominated within the methanogen Archaea guild in the combined bioaugmentation test (in all cases > 65%). Full article
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14 pages, 6648 KB  
Article
Microwave Pre-Treatment of Model Food Waste to Produce Short Chain Organic Acids and Ethanol via Anaerobic Fermentation
by Serena Simonetti, Claudia Fernández Martín and Davide Dionisi
Processes 2022, 10(6), 1176; https://doi.org/10.3390/pr10061176 - 12 Jun 2022
Cited by 11 | Viewed by 3801
Abstract
As an alternative to conventional anaerobic digestion for methane production, anaerobic fermentation (AF) of organic matter can produce short chain organic acids (SCOAs) in a sustainable way. This study investigated the effect of microwave (MW) pre-treatment on the AF of model food waste [...] Read more.
As an alternative to conventional anaerobic digestion for methane production, anaerobic fermentation (AF) of organic matter can produce short chain organic acids (SCOAs) in a sustainable way. This study investigated the effect of microwave (MW) pre-treatment on the AF of model food waste to SCOAs and ethanol. The MW pre-treatment was investigated at three temperatures (120, 150 and 180 °C) and residence times (2, 5 and 8 min). The MW treatment gave a significant reduction in the pH and volatile suspended solids (VSS). The largest reduction in the VSS was 20%, indicating solubilisation of the organic matter. The latter was also confirmed by the increase, although it was not statistically significant, in the soluble chemical oxygen demand (COD) and soluble carbohydrates. In the fermentation batch tests, the total product yield was higher (17.5% COD COD−1) than for the untreated substrate (11.1% COD COD−1). An electricity price of GBP 0.06 kWh−1 would correspond to the market value of the additional SCOAs produced with the pre-treated substrate. Although this price is lower than the current business price of electricity in the UK, the MW pre-treatment could become economically feasible with scale-up effects and by using free excess electricity coming from renewable resources. Full article
(This article belongs to the Section Environmental and Green Processes)
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14 pages, 3618 KB  
Article
Volatile Fatty Acid Production from Food Waste Leachate Using Enriched Bacterial Culture and Soil Bacteria as Co-Digester
by Van Hong Thi Pham, Jeongyoon Ahn, Jaisoo Kim, Sangbeom Lee, Ingyu Lee, Sungchul Kim, Soonwoong Chang and Woojin Chung
Sustainability 2021, 13(17), 9606; https://doi.org/10.3390/su13179606 - 26 Aug 2021
Cited by 17 | Viewed by 5069
Abstract
The production of volatile fatty acids (VFAs) from waste stream has been recently getting attention as a cost-effective and environmentally friendly approach in mechanical–biological treatment plants. This is the first study to explore the use of a functional bacterium, AM5 isolated from forest [...] Read more.
The production of volatile fatty acids (VFAs) from waste stream has been recently getting attention as a cost-effective and environmentally friendly approach in mechanical–biological treatment plants. This is the first study to explore the use of a functional bacterium, AM5 isolated from forest soil, which is capable of enhancing the production of VFAs in the presence of soil bacteria as a co-digester in non-strict anaerobic fermentation processes of food waste leachates. Batch laboratory-scale trials were conducted under thermophilic conditions at 55 °C and different pH values ranging from approximately 5 to 11, as well as under uncontrolled pH for 15 days. Total solid content (TS) and volatile solid content (VS) were observed with 58.42% and 65.17% removal, respectively. An effluent with a VFA concentration of up to 33,849 mg/L (2365.57 mg/g VS; 2244.45 mg/g chemical oxygen demand (COD)-VFA VS; 1249 mg/g VSremoved) was obtained at pH 10.5 on the second day of the batch culture. The pH resulted in a significant effect on VFA concentration and composition at various values. Additionally, all types of VFAs were produced under pH no-adjustment (approximately 5) and at pH 10.5. This research might lead to interesting questions and ideas for further studies on the complex metabolic pathways of microbial communities in the mixture of a soil solution and food waste leachate. Full article
(This article belongs to the Special Issue Sustainable Assessment of Agro-Environmental Impacts)
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18 pages, 2636 KB  
Article
Adjusting Organic Load as a Strategy to Direct Single-Stage Food Waste Fermentation from Anaerobic Digestion to Chain Elongation
by Vicky De Groof, Marta Coma, Tom C. Arnot, David J. Leak and Ana B. Lanham
Processes 2020, 8(11), 1487; https://doi.org/10.3390/pr8111487 - 18 Nov 2020
Cited by 31 | Viewed by 5993
Abstract
Production of medium chain carboxylic acids (MCCA) as renewable feedstock bio-chemicals, from food waste (FW), requires complicated reactor configurations and supplementation of chemicals to achieve product selectivity. This study evaluated the manipulation of organic loading rate in an un-supplemented, single stage stirred tank [...] Read more.
Production of medium chain carboxylic acids (MCCA) as renewable feedstock bio-chemicals, from food waste (FW), requires complicated reactor configurations and supplementation of chemicals to achieve product selectivity. This study evaluated the manipulation of organic loading rate in an un-supplemented, single stage stirred tank reactor to steer an anaerobic digestion (AD) microbiome towards acidogenic fermentation (AF), and thence to chain elongation. Increasing substrate availability by switching to a FW feedstock with a higher COD stimulated chain elongation. The MCCA species n-caproic (10.1 ± 1.7 g L−1) and n-caprylic (2.9 ± 0.8 g L−1) acid were produced at concentrations comparable to more complex reactor set-ups. As a result, of the adjusted operating strategy, a more specialised microbiome developed containing several MCCA-producing bacteria, lactic acid-producing Olsenella spp. and hydrogenotrophic methanogens. By contrast, in an AD reactor that was operated in parallel to produce biogas, the retention times had to be doubled when fed with the high-COD FW to maintain biogas production. The AD microbiome comprised a diverse mixture of hydrolytic and acidogenic bacteria, and acetoclastic methanogens. The results suggest that manipulation of organic loading rate and food-to-microorganism ratio may be used as an operating strategy to direct an AD microbiome towards AF, and to stimulate chain elongation in FW fermentation, using a simple, un-supplemented stirred tank set-up. This outcome provides the opportunity to repurpose existing AD assets operating on food waste for biogas production, to produce potentially higher value MCCA products, via simple manipulation of the feeding strategy. Full article
(This article belongs to the Special Issue Anaerobic Digestion for Bioenergy and Biochemicals Production)
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16 pages, 1542 KB  
Review
Microalgae Biomass as a Potential Feedstock for the Carboxylate Platform
by Jose Antonio Magdalena and Cristina González-Fernández
Molecules 2019, 24(23), 4404; https://doi.org/10.3390/molecules24234404 - 2 Dec 2019
Cited by 18 | Viewed by 4737
Abstract
Volatile fatty acids (VFAs) are chemical building blocks for industries, and are mainly produced via the petrochemical pathway. However, the anaerobic fermentation (AF) process gives a potential alternative to produce these organic acids using renewable resources. For this purpose, waste streams, such as [...] Read more.
Volatile fatty acids (VFAs) are chemical building blocks for industries, and are mainly produced via the petrochemical pathway. However, the anaerobic fermentation (AF) process gives a potential alternative to produce these organic acids using renewable resources. For this purpose, waste streams, such as microalgae biomass, might constitute a cost-effective feedstock to obtain VFAs. The present review is intended to summarize the inherent potential of microalgae biomass for VFA production. Different strategies, such as the use of pretreatments to the inoculum and the manipulation of operational conditions (pH, temperature, organic loading rate or hydraulic retention time) to promote VFA production from different microalgae strains, are discussed. Microbial structure analysis using microalgae biomass as a substrate is pointed out in order to further comprehend the roles of bacteria and archaea in the AF process. Finally, VFA applications in different industry fields are reviewed. Full article
(This article belongs to the Special Issue Microalgae for Production of Bioproducts and Biofuels)
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15 pages, 4621 KB  
Article
Biomethanation of Harmful Macroalgal Biomass in Leach-Bed Reactor Coupled to Anaerobic Filter: Effect of Water Regime and Filter Media
by Heejung Jung, Jaai Kim and Changsoo Lee
Int. J. Environ. Res. Public Health 2018, 15(5), 866; https://doi.org/10.3390/ijerph15050866 - 26 Apr 2018
Cited by 9 | Viewed by 5194
Abstract
Ulva is a marine macroalgal genus which causes serious green tides in coastal areas worldwide. This study investigated anaerobic digestion as a way to manage Ulva waste in a leach-bed reactor coupled to an anaerobic filter (LBR-AF). Two LBR-AF systems with different filter [...] Read more.
Ulva is a marine macroalgal genus which causes serious green tides in coastal areas worldwide. This study investigated anaerobic digestion as a way to manage Ulva waste in a leach-bed reactor coupled to an anaerobic filter (LBR-AF). Two LBR-AF systems with different filter media, blast furnace slag grains for R1, and polyvinyl chloride rings for R2, were run at increasing water replacement rates (WRRs). Both achieved efficient volatile solids reduction (68.4–87.1%) and methane yield (148–309 mL/g VS fed) at all WRRs, with the optimal WRR for maximum methane production being 100 mL/d. R1 maintained more stable methanation performance than R2, possibly due to the different surface properties (i.e., biomass retention capacity) of the filter media. Such an effect was also noted in the different behaviors of the LBR and AF between R1 and R2. The molecular analysis results revealed that the development of the microbial community structure in the reactors was primarily determined by the fermentation type, i.e., dry (LBR) or wet (AF). Full article
(This article belongs to the Section Environmental Science and Engineering)
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