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Keywords = anthocyanin accumulation

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17 pages, 10116 KB  
Article
Blueberry Anthocyanins Ameliorate Hepatic Dysfunction in High-Fat Diet-Fed Mice: Association with Altered Gut Microbiota and Bile Acid Metabolism
by Peng Xu, Yucheng He, Junyi Wang, Yingkun Sheng and Jianfeng Wang
Foods 2025, 14(17), 3121; https://doi.org/10.3390/foods14173121 (registering DOI) - 6 Sep 2025
Abstract
The rapid rise in obesity has evolved into a critical global public health concern. Considering the potential adverse effects of current anti-obesity medications, the development of functional foods sourced from natural materials has emerged as a viable alternative. Blueberries, a category of berry [...] Read more.
The rapid rise in obesity has evolved into a critical global public health concern. Considering the potential adverse effects of current anti-obesity medications, the development of functional foods sourced from natural materials has emerged as a viable alternative. Blueberries, a category of berry fruits, exhibit potential anti-obesity characteristics. In this research, we assessed the impacts of Blueberry extract rich in anthocyanins (BE) on lipid metabolism and liver health in a high-fat diet (HFD)-induced obese mouse model. The findings indicated that BE notably diminished lipid accumulation in both serum and the liver, and mitigated hepatic steatosis and oxidative stress. Integrated proteomic, metagenomic, and metabolomic analyses further revealed the underlying mechanisms. Consumption of BE intake reconfigured the gut microbiota composition and reduced the microbial capacity for secondary bile acid metabolism, thereby interrupting bile acid recycling and facilitating fecal excretion. This process led to a reduction in systemic cholesterol levels and ultimately alleviated hepatic lipid accumulation, resulting in enhanced liver health. Full article
(This article belongs to the Section Nutraceuticals, Functional Foods, and Novel Foods)
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14 pages, 1465 KB  
Article
Ku2: A Novel Korean Purple-Green Tea Germplasm (Camellia sinensis) with Enhanced Polyphenols and Antioxidant Activity
by Yun-Suk Kwon, Doo-Gyung Moon, Ha Rim Hong, Byung-Hyuk Kim, Eun Young Song, Chun Hwan Kim and Su Jin Kim
Plants 2025, 14(17), 2742; https://doi.org/10.3390/plants14172742 - 2 Sep 2025
Viewed by 187
Abstract
Although colored-leaf tea germplasms can broaden product diversity and functional potential, such resources have been rarely reported in Korea. Herein, we comprehensively characterized Ku2, a newly discovered purple-green line of Camellia sinensis, and benchmarked it against the conventional green-leaf ‘Sangmok’. Five-year-old plants [...] Read more.
Although colored-leaf tea germplasms can broaden product diversity and functional potential, such resources have been rarely reported in Korea. Herein, we comprehensively characterized Ku2, a newly discovered purple-green line of Camellia sinensis, and benchmarked it against the conventional green-leaf ‘Sangmok’. Five-year-old plants grown under identical open-field conditions were evaluated for growth characteristics, leaf pigmentation, biochemical composition, and antioxidant capacity. Ku2 exhibited a more vigorous growth habit with denser branching and produced leaves that were 11% longer and 17% wider than those of ‘Sangmok’, but chlorophyll concentrations were 29–33% lower. Young shoots of Ku2 in the first flush accumulated markedly higher levels of total polyphenols (+38%), anthocyanins (+78%), and total catechins (+35%), including a 70% increase in epigallocatechin-3-gallate. But amino acid and theanine contents were reduced to 30% and 25% of those in ‘Sangmok’, respectively. Consistent with its polyphenol enrichment, Ku2 extracts displayed superior radical-scavenging activity, with lower DPPH and ABTS IC50 values (7.6 ± 0.5 and 11.6 ± 0.2 µg·mL−1) than ‘Sangmok’ (10.1 ± 0.4 and 15.1 ± 0.1 µg·mL−1), approaching ascorbic acid and Trolox standards. These findings highlight Ku2 as a valuable germplasm for developing premium Korean teas and for breeding colored-leaf cultivars enriched with health-promoting metabolites. Full article
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16 pages, 2821 KB  
Article
Transcriptomic Analysis Reveals the Regulation Function of Calcium Ions Regarding Anthocyanin Biosynthesis in Lonicera japonica Under Cold Stress
by Jie Chen, Wenxi Zheng, Ruonan Que, Junle Lv, Pei Wang, Jiachen Li, Lin Zhang and Bingxian Yang
Horticulturae 2025, 11(9), 1023; https://doi.org/10.3390/horticulturae11091023 - 1 Sep 2025
Viewed by 211
Abstract
Lonicera japonica is a widely utilized medicinal and ornamental plant. Its secondary metabolism is highly sensitive to cold stress. Previous studies have demonstrated how L. japonica accumulates anthocyanin in response to cold stress, with calcium ions playing a potential role in the regulation. [...] Read more.
Lonicera japonica is a widely utilized medicinal and ornamental plant. Its secondary metabolism is highly sensitive to cold stress. Previous studies have demonstrated how L. japonica accumulates anthocyanin in response to cold stress, with calcium ions playing a potential role in the regulation. To further clarify the regulatory function of calcium ions regarding pigment formation under cold stress, transcriptomic analysis was conducted on exogenous calcium ions and calcium chelator EGTA-treated L. japonica under cold stress. The CaCl2 treatment markedly delayed changes in the pigmentation, and the plant maintained a higher chlorophyll content, whereas EGTA treatment enhanced anthocyanin accumulation and induced earlier and more intense leaf coloration. A total of 17,296 differentially expressed genes were co-expressed during cold stress, and calcium-responsive genes were predominantly enriched in phenylpropanoid biosynthesis, hormone signaling, and stress response pathways. Notably, key transcription factors such as MYBS3 and BRH1 were identified with expression patterns that closely correlated with pigment changes and stress adaptation. These results indicate the deep involvement of molecular mechanisms of calcium signaling in modulating pigment accumulation in response to cold stress, providing a theoretical foundation for improving both the ornamental and medicinal value of L. japonica under adverse environmental conditions. Full article
(This article belongs to the Section Genetics, Genomics, Breeding, and Biotechnology (G2B2))
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15 pages, 2857 KB  
Article
Anthocyanin Synthesis Capability of Maize Cultivars Is Associated with Their Photosynthetic Carbon Partitioning for Growth Adaptability Under Low Phosphorus
by Wang Tang, Zu-Dong Xiao, Xing-Wei Liang, Si Shen, Xiao-Gui Liang and Shun-Li Zhou
Plants 2025, 14(17), 2690; https://doi.org/10.3390/plants14172690 - 28 Aug 2025
Viewed by 300
Abstract
Anthocyanins (ACNs) are flavonoid pigments that accumulate in plants and respond to environmental stimuli, including low phosphorus (LP). The synthesis and stable accumulation of ACNs rely on substantial carbohydrate investment, implying a potential role in carbon partitioning-mediated growth and resistance, in addition to [...] Read more.
Anthocyanins (ACNs) are flavonoid pigments that accumulate in plants and respond to environmental stimuli, including low phosphorus (LP). The synthesis and stable accumulation of ACNs rely on substantial carbohydrate investment, implying a potential role in carbon partitioning-mediated growth and resistance, in addition to the well-established antioxidant activity. To investigate cultivar-dependent differences in ACN accumulation and their relationship with photo-assimilate partitioning and growth adaptation under LP stress, seedlings of six representative maize cultivars were hydroponically cultured under both control and LP conditions. ACNs content, photosynthetic parameters, plant relative growth ratio, and tissue-specific carbohydrates were quantified. The results showed that LP reduced photosynthesis and biomass, while stimulating ACNs biosynthesis in leaves and sheaths. Cultivars were then classified as ACN-sensitive and -insensitive groups based on the ACNs accumulation in the newly unfolded leaves and corresponding sheaths. ACN-sensitive cultivars exhibited higher ACNs levels, which correlated positively with soluble sugars but negatively with starch reserves, suggesting preferential carbon partitioning to ACNs precursors rather than to starch. These cultivars also maintained higher relative growth ratios under LP, associated with less photosynthesis decline and starch accumulation compared with ACN-insensitive cultivars. We hypothesize that ACNs synthesis function as a diversion of photo-assimilates into secondary metabolism under LP, thereby improving photosynthetic efficiency by mitigating excess sugar accumulation that could impair plant growth. This carbon-partitioning adaptation could be exploited by selecting for ACNs accumulation as a breeding trait to enhance maize resilience to LP. Full article
(This article belongs to the Special Issue Secondary Metabolite Biosynthesis in Plants)
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18 pages, 3788 KB  
Article
Integrated Transcriptomic and Metabolomic Analysis of Color Changes in Maize Root Systems Treated with Methyl Jasmonate
by Chao Zhang, Lili Zhang and Huan Guo
Biology 2025, 14(9), 1124; https://doi.org/10.3390/biology14091124 - 25 Aug 2025
Viewed by 464
Abstract
(1) Background: As a high-biomass cereal crop, maize provides substantial raw materials for food, animal feed, and processing industries. Plant root systems, vital for nutritional support, are directly vulnerable to diverse stressors that result in developmental abnormalities. Anthocyanins function as essential antioxidants, serving [...] Read more.
(1) Background: As a high-biomass cereal crop, maize provides substantial raw materials for food, animal feed, and processing industries. Plant root systems, vital for nutritional support, are directly vulnerable to diverse stressors that result in developmental abnormalities. Anthocyanins function as essential antioxidants, serving not only as natural pigments, but also playing crucial roles in plant stress resistance. As an essential plant hormone, jasmonic acid (JA) mediates plant stress adaptation and developmental processes, and is frequently employed to stimulate anthocyanin production. (2) Methods: Due to scarce reports on JA functions in maize, we specifically examined JA-triggered developmental regulation and anthocyanin biosynthesis using transcriptomic and metabolomic analysis. (3) Results: Phenotypic analyses revealed that exogenous JA application promoted culm development and intensified pigmentation, while enlarging the areas of stems and primary roots. Combined with phenotypic variations, our integrated transcriptomic and metabolomic analyses of root tissues also indicated that significantly altered metabolites specifically clustered within the flavonoid biosynthesis pathway. Moreover, GO and KEGG enrichment analyses of the associated differentially expressed genes confirmed their participation in this synthetic pathway with high confidence. These findings strongly suggest that methyl jasmonate (MeJA) exposure primarily modulates flavonoid biosynthesis, particularly through regulation of F3H and DFR gene expression, thereby enhancing flavonoid/anthocyanin accumulation in roots. Additionally, our correlation analysis of transcription factors revealed that Zm00001d018097 (MYB), Zm00001d029963 (MYB), and Zm00001d000236 (bHLH) likely participate in regulating the expression of structural genes, thereby promoting the upregulation of functional gene expression. (4) Conclusions: These results provide a robust framework for deciphering the MeJA-mediated regulation of anthocyanin biosynthesis in maize radicles, specifically demonstrating that Zm00001d018097 (MYB), Zm00001d029963 (MYB), and Zm00001d000236 (bHLH) coordinately enhance the expression of F3H and DFR. Full article
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23 pages, 2754 KB  
Article
Impact of Harvest Maturity and Controlled Atmosphere on Strawberry Quality Under Simulated Export Conditions
by Hyang Lan Eum, Ji-Hyun Lee, Jeong Gu Lee, Min-Sun Chang, Kyung-Ran Do, Haejo Yang, Kang-Mo Ku and Dong-Shin Kim
Foods 2025, 14(17), 2959; https://doi.org/10.3390/foods14172959 - 25 Aug 2025
Viewed by 516
Abstract
This study aimed to evaluate the effects of controlled atmosphere (CA) treatment on the postharvest quality of strawberries harvested at different 50% and 80% maturity under export shipping conditions. The strawberries were subjected to CA and refrigerated container (Reefer) environments at 10 °C, [...] Read more.
This study aimed to evaluate the effects of controlled atmosphere (CA) treatment on the postharvest quality of strawberries harvested at different 50% and 80% maturity under export shipping conditions. The strawberries were subjected to CA and refrigerated container (Reefer) environments at 10 °C, and their quality attributes were then analyzed. Metabolomic profiling revealed significant variations in primary and secondary metabolites and volatile organic compounds (VOCs). A pathway analysis revealed that CA conditions altered metabolic pathways related to sugar, amino acid, and energy metabolism during storage. CA treatment effectively delayed the accumulation of anthocyanins and enhanced the levels of specific amino acids and VOCs essential for the flavor and aroma of strawberries. Bioluminescence imaging revealed that CA treatment effectively reduced lipid peroxidation. A correlation analysis showed that certain VOCs and secondary metabolites significantly correlated with lipid peroxidation, indicating their role in enhancing antioxidant activity and reducing oxidative stress. These results suggest that CA conditions are associated with significantly reduced weight loss, the maintenance of firmness, and lower respiration rates in strawberries, particularly in those harvested at 80% maturity, extending the shelf life and improving the sensory quality of strawberries. Therefore, CA treatment is an effective method for long-term export. Full article
(This article belongs to the Section Food Packaging and Preservation)
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23 pages, 20709 KB  
Article
Eutrophication and Salinization as Risk Factors in the Translocation Process of an Endangered Glacial Relict Species
by Michał Arciszewski, Magdalena Pogorzelec, Urszula Bronowicka-Mielniczuk and Marzena Parzymies
Water 2025, 17(16), 2451; https://doi.org/10.3390/w17162451 - 19 Aug 2025
Viewed by 540
Abstract
Species translocation is an increasingly used method in active plant conservation, but its high costs and risk of failure highlight the need for prior research to support its effectiveness. Salix lapponum plantlets obtained through micropropagation were subjected to two biological experiments under laboratory [...] Read more.
Species translocation is an increasingly used method in active plant conservation, but its high costs and risk of failure highlight the need for prior research to support its effectiveness. Salix lapponum plantlets obtained through micropropagation were subjected to two biological experiments under laboratory conditions. The plants were watered with aqueous solutions of NaCl (Experiment 1) and N-NO3 (Experiment 2) for a period of four weeks. The experiments were designed to simulate processes occurring in the natural habitats of the species- increased substrate salinity and eutrophication. To determine the plant response to the presence of NaCl and N-NO3 in the soil substrate, various morpho-physiological traits were examined, including selected growth parameters, relative water content (RWC), photosynthetic pigment content, selected chlorophyll fluorescence parameters, reactive oxygen species (ROS) accumulation, antioxidant enzyme activity, and anthocyanin content. The results showed that both tested factors acted as abiotic stressors. Exposure to NaCl solutions of various concentrations led to a significant deterioration in morpho-physiological parameters, whereas low concentrations of nitrate nitrogen stimulated the growth of S. lapponum. In response to stress, the plants activated defense mechanisms such as increased anthocyanin synthesis, elevated antioxidant enzyme activity, and maintenance of a high relative water content. Full article
(This article belongs to the Section Biodiversity and Functionality of Aquatic Ecosystems)
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18 pages, 3446 KB  
Article
Influence of GA3 and CPPU on the Quality Attributes and Peelability of ‘Wuhe Cuibao’ Grape
by Xinyue Han, Yufei Mi, Huanling Wang, Shaosong Ye, Naomi Abe-Kanoh and Wei Ji
Agronomy 2025, 15(8), 1986; https://doi.org/10.3390/agronomy15081986 - 19 Aug 2025
Viewed by 621
Abstract
Gibberellic acid (GA3) and forchlorfenuron (CPPU) are widely used plant growth regulators for promoting berry enlargement in grapes. To evaluate the effects of GA3 and CPPU on fruit quality and peelability of the seedless grape cultivar ‘Wuhe Cuibao’, and to [...] Read more.
Gibberellic acid (GA3) and forchlorfenuron (CPPU) are widely used plant growth regulators for promoting berry enlargement in grapes. To evaluate the effects of GA3 and CPPU on fruit quality and peelability of the seedless grape cultivar ‘Wuhe Cuibao’, and to determine the optimal concentration combination under the ecological conditions of Jinzhong, Shanxi Province, grape clusters were treated with varying concentrations of GA3 and CPPU at full bloom and again 14 days later (young fruit stage), with water treatment as the control (CK). After maturation, the fruits were harvested for subsequent analysis of external morphology and internal quality parameters in both fruit clusters and individual berries. Paraffin embedding and sectioning were performed to conduct histological observations of cuticle thickness and cellular morphology in the treated fruits. The results indicate that GA3 and CPPU treatments significantly enhanced the external quality of ‘Wuhe Cuibao’ grapes by effectively reducing fruit drop during cultivation. With the exception of T3 treatment, all treatments promoted both cluster elongation and berry enlargement. GA3 treatment alone was more effective than CPPU treatment, and its effects were positively correlated with concentration. The T2 treatment resulted in the greatest increases in fruit length, berry weight, pedicel thickness, and pedicel tensile strength, surpassing the control (CK) by 35.53%, 43.65%, 88.92%, and 104.76%, respectively. The combined application of GA3 and CPPU showed a synergistic effect, especially in T8, which led to the highest increases in cluster length (21.94%), cluster weight (41.92%), and berry width (13.49%) compared with the control. In addition, all treatments promoted the color transition of berries from green to yellow-green. Histological analysis showed a significant increase in cuticle thickness and in the size of both epidermal and subepidermal cells after treatment. In addition, all treatments increased fruit firmness and peel adherence in a concentration-dependent manner. GA3 treatment alone produced the greatest increases in both fruit firmness and peel–flesh adherence, while the addition of CPPU treatment alleviated these effects. All treatments improved internal fruit quality by increasing the content of vitamin C, reducing sugars, soluble sugars, starch, and cellulose. GA3 treatment alone significantly increased the levels of soluble solids, soluble proteins, and total phenols by 5.67%, 1.49%, and 5.38%, respectively, compared to the control (CK). In contrast, CPPU treatment alone significantly reduced the levels of these compounds. Notably, combined GA3 and CPPU treatment in T5 led to the highest accumulation of vitamin C and reducing sugars, with increases of 3.78% and 62.36%, respectively, compared to the CK. Additionally, all treatments reduced anthocyanin and titratable acid levels, with a synergistic effect observed under combined treatment in lowering titratable acidity. Comprehensive evaluation revealed that the combined application of 50 mg·L−1 GA3 and 5.0 mg·L−1 CPPU at full bloom and 14 days thereafter resulted in the greatest overall improvement in grape quality, offering theoretical and practical support for the efficient, high-quality cultivation of this cultivar. Full article
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20 pages, 7618 KB  
Article
Anatomical and Digital Image Analysis of Flavonoid-Mediated Grain Coloration in Rye (Secale cereale L.)
by Pavel A. Zykin, Elena A. Andreeva, Natalia V. Tsvetkova, Andrey N. Bulanov and Anatoly V. Voylokov
Plants 2025, 14(16), 2557; https://doi.org/10.3390/plants14162557 - 17 Aug 2025
Viewed by 440
Abstract
Rye exhibits high diversity in grain coloration among small cereals, which is mainly linked to the presence of colored flavonoids synthesized in the outer layers of the kernel. This variability is not yet sufficiently described from colorimetric, cytological, and biochemical points of view. [...] Read more.
Rye exhibits high diversity in grain coloration among small cereals, which is mainly linked to the presence of colored flavonoids synthesized in the outer layers of the kernel. This variability is not yet sufficiently described from colorimetric, cytological, and biochemical points of view. In this study, the localization of flavonoid pigments, anthocyanins and proanthocyanidins (PAs), was analyzed across different grain tissues in 26 rye lines with identified anthocyanin grain color genes. Grain coloration was objectively characterized using the CIELAB color coordinates and the GrainScan software for image analysis of individual grains. The distribution of anthocyanins and PAs was investigated through light microscopy and matrix-assisted laser desorption/ionization imaging mass spectrometry (MALDI-IMS) on longitudinal and cross sections of the grains. The results revealed that violet-grained lines accumulate anthocyanins in the pericarp, while green-grained lines contain anthocyanins in the aleurone layer. MALDI-IMS confirmed the presence of specific anthocyanins: cyanidins in the pericarp of violet-grained lines and delphinidins in the aleurone layer of green-grained lines. All studied lines, except for the anthocyanin-less vi3 mutants, exhibited PAs in the brown-colored testa. Four main color groups of the rye grains (yellow, green, brown, and violet) could be clearly differentiated using the CIE color coordinate h°. Full article
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15 pages, 3952 KB  
Article
Comparative Omics Analysis of Four Grape Varieties and Exploration of Their Anthocyanin Synthesis Mechanisms
by Kai Zhang, Liyang Zhao and Yanfeng Li
Genes 2025, 16(8), 955; https://doi.org/10.3390/genes16080955 - 13 Aug 2025
Viewed by 492
Abstract
Background: Vitis vinifera L. exhibits diverse varietal traits influencing fruit quality and stress tolerance. The summer black grape (Xiahei), known for its superior tolerance to abiotic stress and intense pigmentation, was hypothesized to possess distinct metabolic and genetic profiles, particularly in flavonoid [...] Read more.
Background: Vitis vinifera L. exhibits diverse varietal traits influencing fruit quality and stress tolerance. The summer black grape (Xiahei), known for its superior tolerance to abiotic stress and intense pigmentation, was hypothesized to possess distinct metabolic and genetic profiles, particularly in flavonoid and anthocyanin biosynthesis. This study aimed to elucidate the metabolic and molecular basis underlying these phenotypic traits by comparing carbohydrate composition and metabolomic and transcriptomic profiles of four grape varieties (summer black, flame seedless, black grape, and red milk). Methods: Grapes were consistently sampled five days after full maturity, and metabolites were analyzed using UPLC-MS/MS and GC-MS, while transcriptome analysis employed RNA sequencing followed by qRT-PCR validation. Results: The results demonstrated that carbohydrate content was similar among all grape varieties, whereas the summer black grape showed significantly higher levels of flavonoids, particularly anthocyanins such as delphinidin-3-O-glucoside, cyanidin-3-O-glucoside, and pelargonidin-3-O-glucoside. Metabolomic analyses revealed substantial enrichment of metabolites involved in flavonoid biosynthesis pathways, in agreement with transcriptomic data showing significant upregulation of key regulatory genes (CHS, DFR, and ANS) specific to anthocyanin biosynthesis. These findings suggest that the pronounced anthocyanin accumulation in summer black grape contributes to its distinctive dark pigmentation and enhanced resistance to abiotic stresses compared to other varieties. Conclusion: This study provides novel insights into the molecular and metabolic mechanisms driving anthocyanin accumulation in summer black grapes, which could inform future breeding programs aimed at improving grape resilience. Full article
(This article belongs to the Section Genes & Environments)
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21 pages, 7191 KB  
Article
Variability in Anthocyanin Expression in Native Maize: Purple Totomoxtle as a Phenotypic Trait of Agroecological Value
by José Gregorio Joya-Dávila, Federico Antonio Gutiérrez-Miceli, Leslie Alondra Serrano-Gómez, Alexis Salazar-Navarro, Daniel González-Mendoza, Olivia Tzintzun-Camacho, Ana Martín Santos-Espinoza, Grisel Sánchez-Grajalez, Eraclio Gómez-Padilla and Jaime Llaven-Martínez
Plants 2025, 14(16), 2511; https://doi.org/10.3390/plants14162511 - 12 Aug 2025
Viewed by 455
Abstract
Purple totomoxtle (maize husk) in native maize represents a phenotypic trait of cultural and agronomic significance within traditional Mesoamerican agroecosystems. This study evaluated the phenotypic expression of anthocyanins in vegetative and reproductive tissues of ten native maize genotypes, including inter-parental crosses derived from [...] Read more.
Purple totomoxtle (maize husk) in native maize represents a phenotypic trait of cultural and agronomic significance within traditional Mesoamerican agroecosystems. This study evaluated the phenotypic expression of anthocyanins in vegetative and reproductive tissues of ten native maize genotypes, including inter-parental crosses derived from both pigmented and non-pigmented lines. Field trials were conducted under rainfed conditions in Chiapas, Mexico. Visual and quantitative assessments included pigmentation intensity, chlorophyll and carotenoid content, ear traits and appearance, grain health, and yield performance. Genotypes exhibiting the purple phenotype showed consistent pigment accumulation in stems, nodes, leaf sheaths, tassels, and bracts (totomoxtle), with statistically significant differences compared to non-pigmented controls. Anthocyanin content in totomoxtle increased by 30% during late developmental stages, whereas chlorophyll and carotenoid levels peaked during early vegetative growth. Pigmented materials displayed healthier grain, enhanced ear appearance, and higher yields, with the JCTM × LLMJ cross reaching 6.60 t ha−1. These findings highlight the functional value of purple totomoxtle and its potential in agroecological programs aimed at resilience, genetic conservation, and integral resource utilization, providing useful criteria such as stable pigment expression and superior yield to guide sustainable reproduction strategies. Full article
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18 pages, 10522 KB  
Article
Genome-Wide Association Study of Agricultural and Biochemical Traits in Radiation-Induced Colored Wheat
by Min Jeong Hong, Chan Seop Ko and Dae Yeon Kim
Agronomy 2025, 15(8), 1933; https://doi.org/10.3390/agronomy15081933 - 11 Aug 2025
Viewed by 277
Abstract
Colored wheat lines, which feature elevated anthocyanin content and associated traits, represent valuable genetic resources for enhancing the plant’s nutritional and aesthetic properties. This genome-wide association study (GWAS) utilized a set of radiation-induced mutant lines to identify genetic loci linked to agricultural and [...] Read more.
Colored wheat lines, which feature elevated anthocyanin content and associated traits, represent valuable genetic resources for enhancing the plant’s nutritional and aesthetic properties. This genome-wide association study (GWAS) utilized a set of radiation-induced mutant lines to identify genetic loci linked to agricultural and biochemical traits. The GWAS models Fixed and Random Model Circulating Probability Unification, and the Bayesian-information and Linkage-Disequilibrium Iteratively Nested Keyway were employed to increase the reliability of marker–trait associations (MTAs). In total, 35 significant MTAs were identified, and seven single-nucleotide polymorphisms (SNPs) were commonly detected by both models. To explore candidate genes, a ± 1.5-Mb window around each significant SNP was analyzed according to the estimated linkage disequilibrium decay, revealing 635 genes. Among these, several genes were annotated as transcription factors and enzymes associated with flavonoid biosynthesis and modification, including MYB, WD-repeat proteins, and UDP-glycosyltransferases. Expression profiling and RT-qPCR further supported the functional relevance of selected SNP–gene pairs, particularly for anthocyanin accumulation and seed color variation. In summary, the integration of GWAS, gene annotation, and expression data could provide valuable insights into the genetic basis of complex traits in wheat, providing data for future molecular studies and marker-assisted breeding of colored wheat mutant cultivars. Full article
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18 pages, 1689 KB  
Article
Effects of Culture Period and Plant Growth Regulators on In Vitro Biomass Production and Phenolic Compounds in Seven Species of Hypericum
by Doina Clapa, Monica Hârţa, Ana Maria Radomir, Adrian George Peticilă, Loredana Leopold, Floricuţa Ranga and Dorin Ioan Sumedrea
Plants 2025, 14(15), 2437; https://doi.org/10.3390/plants14152437 - 6 Aug 2025
Viewed by 346
Abstract
This study evaluated biomass accumulation and phenolic compound production in seven Hypericum species (H. androsaemum, H. calycinum, H. hirsutum, H. kalmianum, H. olympicum, H. perforatum, and H. triquetrifolium) cultivated in vitro under varying growth regulator [...] Read more.
This study evaluated biomass accumulation and phenolic compound production in seven Hypericum species (H. androsaemum, H. calycinum, H. hirsutum, H. kalmianum, H. olympicum, H. perforatum, and H. triquetrifolium) cultivated in vitro under varying growth regulator treatments and culture periods. Shoots were grown on Murashige and Skoog (MS) medium supplemented with benzyladenine (BA) or meta-topoline (mT) and analyzed after 40 and 60 days. MS medium supplemented with 0.2 mg/L BA was the most effective condition for promoting biomass across all species, with shoot fresh weight increasing significantly at 60 days, particularly in H. olympicum, H. perforatum, and H. triquetrifolium. High-performance liquid chromatography coupled with diode array detection and electrospray ionization mass spectrometry (HPLC-DAD-ESI-MS) identified 13 phenolic compounds, including flavonols, hydroxycinnamic acids, anthocyanins, phloroglucinols, and naphthodianthrones. Phenolic profiles were species-specific and influenced by culture period. H. kalmianum accumulated the highest total phenolic content (37.6 mg/g DW), while H. olympicum was the top producer of hypericin and pseudohypericin. These results highlight the crucial role of culture conditions in regulating both biomass and phytochemical production and provide a promising approach for producing bioactive metabolites in Hypericum species through in vitro systems. Full article
(This article belongs to the Special Issue Plant Tissue Culture V)
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23 pages, 4501 KB  
Article
The Effect of SO2 Fumigation, Acid Dipping, and SO2 Combined with Acid Dipping on Metabolite Profile of ‘Heiye’ Litchi (Litchi chinensis Sonn.) Pericarp
by Feilong Yin, Zhuoran Li, Tingting Lai, Libing Long, Yunfen Liu, Dongmei Han, Zhenxian Wu, Liang Shuai and Tao Luo
Horticulturae 2025, 11(8), 923; https://doi.org/10.3390/horticulturae11080923 - 5 Aug 2025
Viewed by 383
Abstract
Sulfur fumigation (SF), acid dipping (HCl treatment, HAT), and their combination (SF+HAT) are common methods for long-term preservation and color protection of litchi. However, their effects on the metabolic profile of the litchi pericarp have not been investigated. SF resulted in a yellowish-green [...] Read more.
Sulfur fumigation (SF), acid dipping (HCl treatment, HAT), and their combination (SF+HAT) are common methods for long-term preservation and color protection of litchi. However, their effects on the metabolic profile of the litchi pericarp have not been investigated. SF resulted in a yellowish-green pericarp by up-regulating lightness (L*), b*, C*, and but down-regulating total anthocyanin content (TAC) and a*, while HAT resulted in a reddish coloration by up-regulating a*, b*, and C* but down-regulating L*, h°, and TAC. SF+HAT recovered reddish color with similar L*, C* to SF but a*, b*, h°, and TAC between SF and HAT. Differential accumulated metabolites (DAMs) detected in HAT (vs. control) were more than those in SF (vs. control), but similar to those in SF+HAT (vs. control). SF specifically down-regulated the content of cyanidin-3-O-rutinoside, sinapinaldehyde, salicylic acid, and tyrosol, but up-regulated 6 flavonoids (luteolin, kaempferol-3-O-(6″-malonyl)galactoside, hesperetin-7-O-glucoside, etc.). Five pathways (biosynthesis of phenylpropanoids, flavonoid biosynthesis, biosynthesis of secondary metabolites, glutathione metabolism, and cysteine and methionine metabolism) were commonly enriched among the three treatments, which significantly up-regulated sulfur-containing metabolites (mainly glutathione, methionine, and homocystine) and down-regulated substrates for browning (mainly procyanidin B2, C1, and coniferyl alcohol). These results provide metabolic evidence for the effect of three treatments on coloration and storability of litchi. Full article
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29 pages, 6015 KB  
Review
A Comprehensive Review of BBX Protein-Mediated Regulation of Anthocyanin Biosynthesis in Horticultural Plants
by Hongwei Li, Kuanping Deng, Yingying Zhao and Delin Xu
Horticulturae 2025, 11(8), 894; https://doi.org/10.3390/horticulturae11080894 - 2 Aug 2025
Viewed by 596
Abstract
Anthocyanins, a subclass of flavonoid pigments, impart vivid red, purple, and blue coloration to horticultural plants, playing essential roles in ornamental enhancement, stress resistance, and pollinator attraction. Recent studies have identified B-box (BBX) proteins as a critical class of transcription factors (TFs) involved [...] Read more.
Anthocyanins, a subclass of flavonoid pigments, impart vivid red, purple, and blue coloration to horticultural plants, playing essential roles in ornamental enhancement, stress resistance, and pollinator attraction. Recent studies have identified B-box (BBX) proteins as a critical class of transcription factors (TFs) involved in anthocyanin biosynthesis. Despite these advances, comprehensive reviews systematically addressing BBX proteins are urgently needed, especially given the complexity and diversity of their roles in regulating anthocyanin production. In this paper, we provide an in-depth overview of the fundamental structures, biological functions, and classification of BBX TFs, along with a detailed description of anthocyanin biosynthetic pathways and bioactivities. Furthermore, we emphasize the diverse molecular mechanisms through which BBX TFs regulate anthocyanin accumulation, including direct activation or repression of target genes, indirect modulation via interacting protein complexes, and co-regulation with other transcriptional regulators. Additionally, we summarize the known upstream regulatory signals and downstream target genes of BBX TFs, highlighting their significance in shaping anthocyanin biosynthesis pathways. Understanding these regulatory networks mediated by BBX proteins will not only advance fundamental horticultural science but also provide valuable insights for enhancing the aesthetic quality, nutritional benefits, and stress adaptability of horticultural crops. Full article
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