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8 pages, 2184 KB  
Brief Report
X-Ray Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Cell-Cycle Protein GpsB
by Nathan I. Nicely, Thomas. M. Bartlett and Richard W. Baker
Crystals 2025, 15(10), 867; https://doi.org/10.3390/cryst15100867 - 30 Sep 2025
Viewed by 152
Abstract
GpsB is a conserved cell-cycle regulator in the Firmicute clade of Gram-positive bacteria that coordinates multiple aspects of envelope biogenesis. Recent studies demonstrate interactions between GpsB and the key division cytoskeleton FtsZ, suggesting that GpsB links cell division to various aspects of cell [...] Read more.
GpsB is a conserved cell-cycle regulator in the Firmicute clade of Gram-positive bacteria that coordinates multiple aspects of envelope biogenesis. Recent studies demonstrate interactions between GpsB and the key division cytoskeleton FtsZ, suggesting that GpsB links cell division to various aspects of cell envelope biogenesis in Staphylococcus aureus and potentially other Firmicutes. We determined a 1.7 Å resolution crystal structure of the N-terminal domain of Staphylococcus aureus GpsB, revealing an asymmetric dimer with a bent conformation. This conformation is nearly identical to one of two conformations reported by Sacco et al., confirming the unique conformation of S. aureus GpsB compared to other Gram-positive bacteria. This structural agreement provides strong validation of the S. aureus GpsB fold and supports its proposed role in organizing the cell division machinery. Full article
(This article belongs to the Section Biomolecular Crystals)
14 pages, 2971 KB  
Article
The Realization of One-to-Two-Port Beam Division in a Five-Channel Acoustic System
by Rui Wang, Zhicheng Xu, Shuai Tang, Wencong Zhang, Jiabin Hou, Haipeng Cui and Yang Liu
Entropy 2025, 27(9), 949; https://doi.org/10.3390/e27090949 - 12 Sep 2025
Viewed by 404
Abstract
In this work, one-to-two-port beam division is achieved in a five-channel acoustic system. The adjacent composing channels are connected by space-varying air slits, thus realizing quantum-like adiabatic energy transfer. Equal-weight beam splitting with opposite phases from two different output ports is obtained in [...] Read more.
In this work, one-to-two-port beam division is achieved in a five-channel acoustic system. The adjacent composing channels are connected by space-varying air slits, thus realizing quantum-like adiabatic energy transfer. Equal-weight beam splitting with opposite phases from two different output ports is obtained in a broadband signal of 6 kHz-10.5 kHz. In addition, owing to the existence of distinct evolution paths, one-way beam division is exhibited when a certain loss is evenly exerted inside the system. Furthermore, one-to-m-port beam division can also be achieved by extending the composing channels, thus making it possible to construct an asymmetric acoustic beam splitter. The simulated results verify that the incident waves can be split into opposite directions unidirectionally, which may have potential applications in concealed information transmission and eavesdropping. Full article
(This article belongs to the Special Issue Shortcut to Adiabaticity in Classical and Quantum Systems)
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26 pages, 9131 KB  
Article
Comparative Analysis of Structural Efficiency of Steel Bar Hyperbolic Paraboloid Modules
by Jolanta Dzwierzynska and Patrycja Lechwar
Materials 2025, 18(17), 4127; https://doi.org/10.3390/ma18174127 - 2 Sep 2025
Viewed by 782
Abstract
Curved roofs constructed using hyperbolic paraboloid (HP) modules are gaining popularity in structural engineering due to their unique aesthetic and structural advantages. Consequently, these studies have investigated steel bar modules based on HP geometry, focusing on how variations in geometric configuration and bar [...] Read more.
Curved roofs constructed using hyperbolic paraboloid (HP) modules are gaining popularity in structural engineering due to their unique aesthetic and structural advantages. Consequently, these studies have investigated steel bar modules based on HP geometry, focusing on how variations in geometric configuration and bar topology affect internal force distribution and overall structural performance. Each module was designed on a 4 × 4 m square plan, incorporating external bars that formed the spatial frame and internal grid bars that filled the frame’s interior. Parametric modeling was conducted using Dynamo, while structural analysis and design were performed in Autodesk Robot Structural Analysis Professional (ARSAP). Key variables included the vertical displacement of frame corners (0–1.0 m at 0.25 m intervals), the orientation and spacing of internal bar divisions, and the overall mesh topology. A total of 126 structural models were analyzed, representing four distinct bar topology variants, including both planar and non-planar mesh configurations. The results demonstrate that structural efficiency is significantly influenced by the geometry and topology of the internal bar system, with notable differences observed across the various structural types. Computational analysis revealed that asymmetric configurations of non-planar quadrilateral subdivisions yielded the highest efficiency, while symmetric arrangements proved optimal for planar panel applications. These findings, along with observed design trends, offer valuable guidance for the development and optimization of steel bar structures based on HP geometry, applicable to both single-module and multi-module configurations. Full article
(This article belongs to the Section Manufacturing Processes and Systems)
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20 pages, 5322 KB  
Article
Regulation of Tetraspanin CD63 in Chronic Myeloid Leukemia (CML): Single-Cell Analysis of Asymmetric Hematopoietic Stem Cell Division Genes
by Christophe Desterke, Annelise Bennaceur-Griscelli and Ali G. Turhan
Bioengineering 2025, 12(8), 830; https://doi.org/10.3390/bioengineering12080830 - 31 Jul 2025
Viewed by 678
Abstract
(1) Background: Chronic myeloid leukemia (CML) is a myeloproliferative disorder driven by the BCR::ABL oncoprotein. During the chronic phase, Philadelphia chromosome-positive hematopoietic stem cells generate proliferative myeloid cells with various stages of maturation. Despite this expansion, leukemic stem cells (LSCs) retain self-renewal capacity [...] Read more.
(1) Background: Chronic myeloid leukemia (CML) is a myeloproliferative disorder driven by the BCR::ABL oncoprotein. During the chronic phase, Philadelphia chromosome-positive hematopoietic stem cells generate proliferative myeloid cells with various stages of maturation. Despite this expansion, leukemic stem cells (LSCs) retain self-renewal capacity via asymmetric cell divisions, sustaining the stem cell pool. Quiescent LSCs are known to be resistant to tyrosine kinase inhibitors (TKIs), potentially through BCR::ABL-independent signaling pathways. We hypothesize that dysregulation of genes governing asymmetric division in LSCs contributes to disease progression, and that their expression pattern may serve as a prognostic marker during the chronic phase of CML. (2) Methods: Genes related to asymmetric cell division in the context of hematopoietic stem cells were extracted from the PubMed database with the keyword “asymmetric hematopoietic stem cell”. The collected relative gene set was tested on two independent bulk transcriptome cohorts and the results were confirmed by single-cell RNA sequencing. (3) Results: The expression of genes involved in asymmetric hematopoietic stem cell division was found to discriminate disease phases during CML progression in the two independent transcriptome cohorts. Concordance between cohorts was observed on asymmetric molecules downregulated during blast crisis (BC) as compared to the chronic phase (CP). This downregulation during the BC phase was confirmed at single-cell level for SELL, CD63, NUMB, HK2, and LAMP2 genes. Single-cell analysis during the CP found that CD63 is associated with a poor prognosis phenotype, with the opposite prediction revealed by HK2 and NUMB expression. The single-cell trajectory reconstitution analysis in CP samples showed CD63 regulation highlighting a trajectory cluster implicating HSPB1, PIM2, ANXA5, LAMTOR1, CFL1, CD52, RAD52, MEIS1, and PDIA3, known to be implicated in hematopoietic malignancies. (4) Conclusion: Regulation of CD63, a tetraspanin involved in the asymmetric division of hematopoietic stem cells, was found to be associated with poor prognosis during CML progression and could be a potential new therapeutic target. Full article
(This article belongs to the Special Issue Micro- and Nano-Technologies for Cell Analysis)
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23 pages, 2571 KB  
Communication
Duchenne Muscular Dystrophy Patient iPSCs—Derived Skeletal Muscle Organoids Exhibit a Developmental Delay in Myogenic Progenitor Maturation
by Urs Kindler, Lampros Mavrommatis, Franziska Käppler, Dalya Gebrehiwet Hiluf, Stefanie Heilmann-Heimbach, Katrin Marcus, Thomas Günther Pomorski, Matthias Vorgerd, Beate Brand-Saberi and Holm Zaehres
Cells 2025, 14(13), 1033; https://doi.org/10.3390/cells14131033 - 7 Jul 2025
Cited by 1 | Viewed by 1526
Abstract
Background: Duchenne muscular dystrophy (DMD), which affects 1 in 3500 to 5000 newborn boys worldwide, is characterized by progressive skeletal muscle weakness and degeneration. The reduced muscle regeneration capacity presented by patients is associated with increased fibrosis. Satellite cells (SCs) are skeletal muscle [...] Read more.
Background: Duchenne muscular dystrophy (DMD), which affects 1 in 3500 to 5000 newborn boys worldwide, is characterized by progressive skeletal muscle weakness and degeneration. The reduced muscle regeneration capacity presented by patients is associated with increased fibrosis. Satellite cells (SCs) are skeletal muscle stem cells that play an important role in adult muscle maintenance and regeneration. The absence or mutation of dystrophin in DMD is hypothesized to impair SC asymmetric division, leading to cell cycle arrest. Methods: To overcome the limited availability of biopsies from DMD patients, we used our 3D skeletal muscle organoid (SMO) system, which delivers a stable population of myogenic progenitors (MPs) in dormant, activated, and committed stages, to perform SMO cultures using three DMD patient-derived iPSC lines. Results: The results of scRNA-seq analysis of three DMD SMO cultures versus two healthy, non-isogenic, SMO cultures indicate reduced MP populations with constant activation and differentiation, trending toward embryonic and immature myotubes. Mapping our data onto the human myogenic reference atlas, together with primary SC scRNA-seq data, indicated a more immature developmental stage of DMD organoid-derived MPs. DMD fibro-adipogenic progenitors (FAPs) appear to be activated in SMOs. Conclusions: Our organoid system provides a promising model for studying muscular dystrophies in vitro, especially in the case of early developmental onset, and a methodology for overcoming the bottleneck of limited patient material for skeletal muscle disease modeling. Full article
(This article belongs to the Special Issue The Current Applications and Potential of Stem Cell-Derived Organoids)
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10 pages, 1694 KB  
Article
Long-Distance FBG Sensor Networks Multiplexed in Asymmetric Tree Topology
by Keiji Kuroda
Sensors 2025, 25(13), 4158; https://doi.org/10.3390/s25134158 - 3 Jul 2025
Viewed by 701
Abstract
This article reports on the interrogation of fiber Bragg grating (FBG)-based sensors that are multiplexed in an asymmetric tree topology. At each stage in the topology, FBGs are connected at one output port of a 50:50 coupler with fibers of different lengths. This [...] Read more.
This article reports on the interrogation of fiber Bragg grating (FBG)-based sensors that are multiplexed in an asymmetric tree topology. At each stage in the topology, FBGs are connected at one output port of a 50:50 coupler with fibers of different lengths. This asymmetric structure allows the simultaneous interrogation of long-distance and parallel sensor networks to be realized. Time- and wavelength-division multiplexing techniques are used to multiplex the FBGs. Using the heterodyne detection technique, high-sensitivity detection of reflection signals that have been weakened by losses induced by a round-trip transmission through the couplers and long-distance propagation is performed. Quasi-distributed FBGs are interrogated simultaneously, over distances ranging from 15 m to 80 km. Full article
(This article belongs to the Special Issue Advances and Innovations in Optical Fiber Sensors)
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13 pages, 836 KB  
Article
The Raiffa–Kalai–Smorodinsky Solution as a Mechanism for Dividing the Uncertain Future Profit of a Partnership
by Yigal Gerchak and Eugene Khmelnitsky
Games 2025, 16(3), 29; https://doi.org/10.3390/g16030029 - 4 Jun 2025
Viewed by 702
Abstract
Establishing a partnership necessitates agreeing on how to divide future profits or losses. We consider parties who wish to contract on the division of uncertain future profits. We propose to divide profits according to the Raiffa–Kalai–Smorodinsky (K-S) solution, which is the intersection point [...] Read more.
Establishing a partnership necessitates agreeing on how to divide future profits or losses. We consider parties who wish to contract on the division of uncertain future profits. We propose to divide profits according to the Raiffa–Kalai–Smorodinsky (K-S) solution, which is the intersection point of the feasible region’s boundary and the line connecting the disagreement and ideal points. It is the only function which satisfies invariance to linear transformations, symmetry, strong Pareto optimality, and monotonicity. We formulate the general problem of designing a contract which divides uncertain future profit between the partners and determines shares of each partner. We first focus on linear and, later, non-linear contracts between two partners, providing analytical and numerical solutions for various special cases in terms of the utility functions of the partners, their beliefs, and the disagreement point. We then generalize the analysis to any number of partners. We also consider a contract which is partially based on the parties’ financial contribution to the partnership, which have a positive impact on profit. Finally, we address asymmetric K-S solutions. K-S solutions are seen to be a useful predictor of the outcome of negotiations, similar to Nash’s bargaining solution. Full article
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16 pages, 4503 KB  
Article
A Design Approach for Asymmetric Coupled Line In-Phase Power Dividers with Arbitrary Terminal Real Impedances and Arbitrary Power Division Ratio
by Yan Zhang, Bin Xia and Junfa Mao
Symmetry 2025, 17(4), 562; https://doi.org/10.3390/sym17040562 - 8 Apr 2025
Viewed by 560
Abstract
In this paper, we first introduced asymmetric coupled lines (ACLs) into both the transmission path and isolation path in traditional in-phase Gysel power dividers and proposed the single-resistor asymmetric coupled line in-phase Gysel power dividers (ACPDs). Utilizing the decoupled branch-line model of ACLs, [...] Read more.
In this paper, we first introduced asymmetric coupled lines (ACLs) into both the transmission path and isolation path in traditional in-phase Gysel power dividers and proposed the single-resistor asymmetric coupled line in-phase Gysel power dividers (ACPDs). Utilizing the decoupled branch-line model of ACLs, a generalized design approach for ACPDs with arbitrary terminal real impedances and arbitrary power division ratio was innovatively proposed. Design formulas relating terminal real impedances, power division ratio, and image impedances of ACLs, for simultaneously satisfying the perfect port isolation and match conditions, are presented. ACPDs achieved a large in-phase power division ratio of 100:1 (20 dB) and offered significant advantages, including impedance transformation, high design freedom, and miniaturization. To automatically determine accurate initial values of geometric parameters for ACLs, a solution software based on MATLAB-HFSS co-simulation and multi-layer perception neural networks was developed, significantly reducing subsequent optimization iterations. To verify the proposed analysis theory and design approach, three ACPDs with different power division ratios of 1:1 (3 dB), 10:1 (10 dB), and 100:1 (20 dB) were implemented. Comparisons of the measured and simulated results showed great accordance, and the three ACPDs achieved good frequency bandwidth, high isolation, excellent port match, and compact size. Full article
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16 pages, 4100 KB  
Article
Analysis and Experiments of Resonant Coupling Wireless Power Transfer System for Nonuniform Powering of Multiple Sensors
by Thuc Phi Duong, Ngoc Hung Phi, Bilal Ahmad, Sasani Jayasekara and Jong-Wook Lee
Sensors 2025, 25(7), 2342; https://doi.org/10.3390/s25072342 - 7 Apr 2025
Cited by 1 | Viewed by 721
Abstract
With a quickly increasing number of Internet of Things (IoT) involving different power levels, wireless power transfer (WPT) systems need the capability to deliver energy to multiple receivers simultaneously. The nonuniform powering of multiple receivers is also necessary, considering the different power levels [...] Read more.
With a quickly increasing number of Internet of Things (IoT) involving different power levels, wireless power transfer (WPT) systems need the capability to deliver energy to multiple receivers simultaneously. The nonuniform powering of multiple receivers is also necessary, considering the different power levels that IoT sensors demand. This paper investigates asymmetric resonant coupling WPT systems for powering multiple receivers. We propose a simple method for achieving the specified power ratio of the multiple receivers using the equivalent circuit model and reflected impedance technique. The results are generalized for a system with an N number of multiple receivers. Experiments are performed for powering two receivers with power ratios of 1.5 and 2.5, which achieve a power transfer efficiency of 91.7% and 88.6%, respectively. Another experiment performed for powering four receivers, which have power ratios of 1.0, 1.5, 2.0, and 0.75, shows an efficiency of up to 89.9%, which agrees well with the simulation result. Our result shows that the distance between the source loop and the transmitting resonator can be varied to maximize efficiency without altering the power division. Full article
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10 pages, 895 KB  
Opinion
Latest News from the “Guardian”: p53 Directly Activates Asymmetric Stem Cell Division Regulators
by Ana Carmena
Int. J. Mol. Sci. 2025, 26(7), 3171; https://doi.org/10.3390/ijms26073171 - 29 Mar 2025
Viewed by 949
Abstract
Since its discovery in 1979, the human tumor suppressor gene TP53—also known as the “guardian of the genome”—has been the subject of intense research. Mutated in most human cancers, TP53 has traditionally been considered a key fighter against stress factors by trans-activating [...] Read more.
Since its discovery in 1979, the human tumor suppressor gene TP53—also known as the “guardian of the genome”—has been the subject of intense research. Mutated in most human cancers, TP53 has traditionally been considered a key fighter against stress factors by trans-activating a network of target genes that promote cell cycle arrest, DNA repair, or apoptosis. Intriguingly, over the past years, novel non-canonical functions of p53 in unstressed cells have also emerged, including the mode of stem cell division regulation. However, the mechanisms by which p53 modulates these novel functions remain incompletely understood. In a recent work, we found that Drosophila p53 controls asymmetric stem cell division (ASCD) in neural stem cells by transcriptionally activating core ASCD regulators, such as the conserved cell-fate determinants Numb and Brat (NUMB and TRIM3/TRIM2/TRIM32 in humans, respectively). In this short communication, we comment on this new finding, the mild phenotypes associated with Drosophila p53 mutants in this context, as well as novel avenues for future research. Full article
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18 pages, 8118 KB  
Article
Asymmetric Modulation Physical-Layer Network Coding Based on Power Allocation and Multiple Receive Antennas in an OFDM-UWOC Three-User Relay Network
by Yanlong Li, Pengcheng Jiang, Shuaixing Li, Xiao Chen, Qihao He and Tuyang Wang
Photonics 2025, 12(2), 144; https://doi.org/10.3390/photonics12020144 - 10 Feb 2025
Cited by 1 | Viewed by 830
Abstract
In relay-assisted underwater wireless optical communication (UWOC) systems, the traditional time-division-multiplexed relay forwarding strategy faces high latency and low throughput with the increase of relay users. To address these issues, this paper proposes a multiple receiving antenna power allocation-based bit splicing physical layer [...] Read more.
In relay-assisted underwater wireless optical communication (UWOC) systems, the traditional time-division-multiplexed relay forwarding strategy faces high latency and low throughput with the increase of relay users. To address these issues, this paper proposes a multiple receiving antenna power allocation-based bit splicing physical layer network coding (MRA-PABS-PNC) method in a three-user asymmetric modulated relay-assisted UWOC scenario. MRA-PABS-PNC reduces the number of multiple access time slots by using multi-antenna reception techniques. At the same time, it employs a bit-splicing method to concatenate the data that would normally be transmitted over two-time slots into a longer data stream transmitted in a single time slot, thus reducing the number of broadcast time slots and ultimately improving throughput. Moreover, this paper models and determines the optimal position and angle of the relay node photodetector. Once the relay node is positioned at the optimal location and angle, the system can allocate power to each user node based on the channel state information to overcome the effect of asymmetric channels on PNC coding, thereby further improving system performance. Simulation results show that the method improves the throughput by 100% compared with the existing four-time slot PNC (FT-PNC) method. Full article
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14 pages, 6635 KB  
Article
Slope Calculation Analysis Based on Arbitrary Polygonal Hybrid Stress Elements Considering Gravity
by Chang Liu, Jingjie Tian, Changhao Hu, Fan Xia, Runjie Wang, Xuyang Wei and Ying Xu
Symmetry 2025, 17(2), 265; https://doi.org/10.3390/sym17020265 - 10 Feb 2025
Viewed by 715
Abstract
This article proposes an arbitrary polygonal hybrid stress element considering gravity. It derives an arbitrary polygonal hybrid stress element considering gravity alone for slope stability related engineering analysis. In the stability analysis of slopes, slope disasters caused by gravity erosion have recently become [...] Read more.
This article proposes an arbitrary polygonal hybrid stress element considering gravity. It derives an arbitrary polygonal hybrid stress element considering gravity alone for slope stability related engineering analysis. In the stability analysis of slopes, slope disasters caused by gravity erosion have recently become an urgent problem to be solved through engineering. The traditional finite element analysis of slope stability faces problems such as a large number of divided elements and slow calculation efficiency. By introducing high-order stress fields through stress hybridization elements, accurate results can be simulated using a small number of elements. When dividing the mesh, most of the cell shapes are asymmetric, and the shape of the cell can be any polygon, which can simulate the geometric shape of complex slopes well and more accurately calculate the stress distribution in different parts, thus accurately simulating the stability situation in engineering. By comparing with the corresponding commercial software MARC 2020, the effectiveness and efficiency of the element were verified. It has been proven that any polygonal hybrid stress element has the advantage of flexible mesh division, which can obtain high-order stress fields and stress concentration phenomena with fewer elements. Applying this element to practical problems of slopes in engineering has also achieved good calculation results. Full article
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13 pages, 6504 KB  
Article
Germanium Metasurface for the Polarization-Sensitive Stokes Thermal Imaging at a MWIR 4-Micron Wavelength
by Hosna Sultana
Photonics 2025, 12(2), 137; https://doi.org/10.3390/photonics12020137 - 7 Feb 2025
Viewed by 1841
Abstract
The mid-wave infrared (MWIR) spectral range can provide a larger bandwidth for optical sensing and communication when the near-infrared band becomes congested. This range of thermal signatures can provide more information for digital imaging and object recognition, which can be unraveled from polarization-sensitive [...] Read more.
The mid-wave infrared (MWIR) spectral range can provide a larger bandwidth for optical sensing and communication when the near-infrared band becomes congested. This range of thermal signatures can provide more information for digital imaging and object recognition, which can be unraveled from polarization-sensitive detection by integrating the metasurface of the subwavelength-scale structured interface to control light–matter interactions. To enforce the metasurface-enabled simultaneous detection and parallel analysis of polarization states in a compact footprint for 4-micron wavelength, we designed a high-contrast germanium metasurface with an axially asymmetric triangular nanoantenna with a height 0.525 times the working wavelength. First, we optimized linear polarization separation of a 52-degree angle with about 50% transmission efficiency, holding the meta-element aspect ratio within the 3.5–1.67 range. The transmission modulation in terms of periodicity and lattice resonance for the phase-gradient high-contrast dielectric metasurface in correlation with the scattering cross-section for both 1D and 2D cases has been discussed for reducing the aspect ratio to overcome the nanofabrication challenge. Furthermore, by employing the geometric phase, we achieved 40% and 60% transmission contrasts for the linear and circular polarization states, respectively, and reconstructed the Stokes vectors and output polarization states. Without any spatial multiplexing, this single metasurface unit cell can perform well in the division of focal plane Stokes thermal imaging, with an almost 10-degree field of view, and it has an excellent refractive index and height tolerance for nanofabrication. Full article
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19 pages, 1014 KB  
Article
A Novel Flip-Filtered Orthagonal Frequency Division Multiplexing-Based Visible Light Communication System: Peak-to-Average-Power Ratio Assessment and System Performance Improvement
by Hayder S. R. Hujijo and Muhammad Ilyas
Photonics 2025, 12(1), 69; https://doi.org/10.3390/photonics12010069 - 15 Jan 2025
Cited by 1 | Viewed by 1225
Abstract
Filtered orthogonal frequency division multiplexing (F-OFDM), employed in visible light communication (VLC) systems, has been considered a promising technique for overcoming OFDM’s large out-of-band emissions and thus reducing bandwidth efficiency. However, due to Hermitian symmetry (HS) imposition, a challenge in VLC involves increasing [...] Read more.
Filtered orthogonal frequency division multiplexing (F-OFDM), employed in visible light communication (VLC) systems, has been considered a promising technique for overcoming OFDM’s large out-of-band emissions and thus reducing bandwidth efficiency. However, due to Hermitian symmetry (HS) imposition, a challenge in VLC involves increasing power consumption and doubling inverse fast Fourier transform IFFT/FFT length. This paper introduces the non-Hermitian symmetry (NHS) Flip-F-OFDM technique to enhance bandwidth efficiency, reduce the peak–average-power ratio (PAPR), and lower system complexity. Compared to the traditional HS-based Flip-F-OFDM method, the proposed method achieves around 50% reduced system complexity and prevents the PAPR from increasing. Therefore, the proposed method offers more resource-saving and power efficiency than traditional Flip-F-OFDM. Then, the proposed scheme is assessed with HS-free Flip-OFDM, asymmetrically clipped optical (ACO)-OFDM, and direct-current bias optical (DCO)-OFDM. Concerning bandwidth efficiency, the proposed method shows better spectral efficiency than HS-free Flip-OFDM, ACO-OFDM, and DCO-OFDM. Full article
(This article belongs to the Section Optical Communication and Network)
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24 pages, 5762 KB  
Article
Relative Distribution of DnaA and DNA in Escherichia coli Cells as a Factor of Their Phenotypic Variability
by Sharanya K. Namboodiri, Alexander Aranovich, Uzi Hadad, Levi A. Gheber, Mario Feingold and Itzhak Fishov
Int. J. Mol. Sci. 2025, 26(2), 464; https://doi.org/10.3390/ijms26020464 - 8 Jan 2025
Cited by 2 | Viewed by 1407
Abstract
Phenotypic variability in isogenic bacterial populations is a remarkable feature that helps them cope with external stresses, yet it is incompletely understood. This variability can stem from gene expression noise and/or the unequal partitioning of low-copy-number freely diffusing proteins during cell division. Some [...] Read more.
Phenotypic variability in isogenic bacterial populations is a remarkable feature that helps them cope with external stresses, yet it is incompletely understood. This variability can stem from gene expression noise and/or the unequal partitioning of low-copy-number freely diffusing proteins during cell division. Some high-copy-number components are transiently associated with almost immobile large assemblies (hyperstructures) and may be unequally distributed, contributing to bacterial phenotypic variability. We focus on the nucleoid hyperstructure containing numerous DNA-associated proteins, including the replication initiator DnaA. Previously, we found an increasing asynchrony in the nucleoid segregation dynamics in growing E. coli cell lineages and suggested that variable replication initiation timing may be the main cause of this phenomenon. Here, we support this hypothesis revealing that DnaA/DNA variability represents a key factor leading to the enhanced asynchrony in E. coli. We followed the intra- and intercellular distribution of fluorescently tagged DnaA and histone-like HU chromosomally encoded under their native promoters. The diffusion rate of DnaA is low, corresponding to a diffusion-binding mode of mobility, but still one order faster than that of HU. The intracellular distribution of DnaA concentration is homogeneous in contrast to the significant asymmetry in the distribution of HU to the cell halves, leading to the unequal DNA content of nucleoids and DnaA/DNA ratios in future daughter compartments. Accordingly, the intercellular variabilities in HU concentration (CV = 26%) and DnaA/DNA ratio (CV = 18%) are high. The variable DnaA/DNA may cause a variable replication initiation time (initiation noise). Asynchronous initiation at different replication origins may, in turn, be the mechanism leading to the observed asymmetric intracellular DNA distribution. Our findings indicate that the feature determining the variability of the initiation time in E. coli is the DnaA/DNA ratio, rather than each of them separately. We provide a likely mechanism for the ‘loss of segregation synchrony’ phenomenon. Full article
(This article belongs to the Special Issue Molecular Research on Bacteria)
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