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Keywords = automated material discovery

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36 pages, 6171 KB  
Review
Atomistic Modeling of Microstructural Defect Evolution in Alloys Under Irradiation: A Comprehensive Review
by Yue Fan
Appl. Sci. 2025, 15(16), 9110; https://doi.org/10.3390/app15169110 - 19 Aug 2025
Viewed by 289
Abstract
Developing structural materials capable of maintaining integrity under extreme irradiation conditions is a cornerstone challenge for advancing sustainable nuclear energy technologies. The complexity and severity of radiation-induced microstructural changes—spanning multiple length and timescales—pose significant hurdles for purely experimental approaches. This review critically evaluates [...] Read more.
Developing structural materials capable of maintaining integrity under extreme irradiation conditions is a cornerstone challenge for advancing sustainable nuclear energy technologies. The complexity and severity of radiation-induced microstructural changes—spanning multiple length and timescales—pose significant hurdles for purely experimental approaches. This review critically evaluates recent advancements in atomistic modeling, emphasizing its transformative potential to decipher fundamental mechanisms driving microstructural evolution in irradiated alloys. Atomistic simulations, such as molecular dynamics (MD), have successfully unveiled initial defect formation processes at picosecond scales. However, the inherent temporal limitations of conventional MD necessitate advanced methodologies capable of exploring slower, thermally activated defect kinetics. We specifically traced the development of powerful potential energy landscape (PEL) exploration algorithms, which enable the simulation of high-barrier, rare events of defect evolution processes that govern long-term material degradation. The review systematically examines point defect behaviors in various crystal structures—BCC, FCC, and HCP metals—and elucidates their characteristic defect dynamics, respectively. Additionally, it highlights the pronounced effects of chemical complexity in concentrated solid-solution alloys and high-entropy alloys, notably their sluggish diffusion and enhanced defect recombination, underpinning their superior radiation tolerance. Further, the interaction of extended defects with mechanical stresses and their mechanistic implications for material properties are discussed, highlighting the critical interplay between thermal activation and strain rate in defect evolution. Special attention is dedicated to the diverse mechanisms of dislocation–obstacle interactions, as well as the behaviors of metastable grain boundaries under far-from-equilibrium environments. The integration of data-driven methods and machine learning with atomistic modeling is also explored, showcasing their roles in developing quantum-accurate potentials, automating defect analysis, and enabling efficient surrogate models for predictive design. This comprehensive review also outlines future research directions and fundamental questions, paving the way toward autonomous materials’ discovery in extreme environments. Full article
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28 pages, 6648 KB  
Review
Machine Learning in Gel-Based Additive Manufacturing: From Material Design to Process Optimization
by Zhizhou Zhang, Yaxin Wang and Weiguang Wang
Gels 2025, 11(8), 582; https://doi.org/10.3390/gels11080582 - 28 Jul 2025
Cited by 1 | Viewed by 946
Abstract
Machine learning is reshaping gel-based additive manufacturing by enabling accelerated material design and predictive process optimization. This review provides a comprehensive overview of recent progress in applying machine learning across gel formulation development, printability prediction, and real-time process control. The integration of algorithms [...] Read more.
Machine learning is reshaping gel-based additive manufacturing by enabling accelerated material design and predictive process optimization. This review provides a comprehensive overview of recent progress in applying machine learning across gel formulation development, printability prediction, and real-time process control. The integration of algorithms such as neural networks, random forests, and support vector machines allows accurate modeling of gel properties, including rheology, elasticity, swelling, and viscoelasticity, from compositional and processing data. Advances in data-driven formulation and closed-loop robotics are moving gel printing from trial and error toward autonomous and efficient material discovery. Despite these advances, challenges remain regarding data sparsity, model robustness, and integration with commercial printing systems. The review results highlight the value of open-source datasets, standardized protocols, and robust validation practices to ensure reproducibility and reliability in both research and clinical environments. Looking ahead, combining multimodal sensing, generative design, and automated experimentation will further accelerate discoveries and enable new possibilities in tissue engineering, biomedical devices, soft robotics, and sustainable materials manufacturing. Full article
(This article belongs to the Section Gel Processing and Engineering)
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24 pages, 2613 KB  
Article
Hierarchical Sensing Framework for Polymer Degradation Monitoring: A Physics-Constrained Reinforcement Learning Framework for Programmable Material Discovery
by Xiaoyu Hu, Xiuyuan Zhao and Wenhe Liu
Sensors 2025, 25(14), 4479; https://doi.org/10.3390/s25144479 - 18 Jul 2025
Viewed by 373
Abstract
The design of materials with programmable degradation profiles presents a fundamental challenge in pattern recognition across molecular space, requiring the identification of complex structure–property relationships within an exponentially large chemical domain. This paper introduces a novel physics-informed deep learning framework that integrates multi-scale [...] Read more.
The design of materials with programmable degradation profiles presents a fundamental challenge in pattern recognition across molecular space, requiring the identification of complex structure–property relationships within an exponentially large chemical domain. This paper introduces a novel physics-informed deep learning framework that integrates multi-scale molecular sensing data with reinforcement learning algorithms to enable intelligent characterization and prediction of polymer degradation dynamics. Our method combines three key innovations: (1) a dual-channel sensing architecture that fuses spectroscopic signatures from Graph Isomorphism Networks with temporal degradation patterns captured by transformer-based models, enabling comprehensive molecular state detection across multiple scales; (2) a physics-constrained policy network that ensures sensor measurements adhere to thermodynamic principles while optimizing the exploration of degradation pathways; and (3) a hierarchical signal processing system that balances multiple sensing modalities through adaptive weighting schemes learned from experimental feedback. The framework employs curriculum-based training that progressively increases molecular complexity, enabling robust detection of degradation markers linking polymer architectures to enzymatic breakdown kinetics. Experimental validation through automated synthesis and in situ characterization of 847 novel polymers demonstrates the framework’s sensing capabilities, achieving a 73.2% synthesis success rate and identifying 42 structures with precisely monitored degradation profiles spanning 6 to 24 months. Learned molecular patterns reveal previously undetected correlations between specific spectroscopic signatures and degradation susceptibility, validated through accelerated aging studies with continuous sensor monitoring. Our results establish that physics-informed constraints significantly improve both the validity (94.7%) and diversity (0.82 Tanimoto distance) of generated molecular structures compared with unconstrained baselines. This work advances the convergence of intelligent sensing technologies and materials science, demonstrating how physics-informed machine learning can enhance real-time monitoring capabilities for next-generation sustainable materials. Full article
(This article belongs to the Special Issue Functional Polymers and Fibers: Sensing Materials and Applications)
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32 pages, 4701 KB  
Review
Machine-Learning-Guided Design of Nanostructured Metal Oxide Photoanodes for Photoelectrochemical Water Splitting: From Material Discovery to Performance Optimization
by Xiongwei Liang, Shaopeng Yu, Bo Meng, Yongfu Ju, Shuai Wang and Yingning Wang
Nanomaterials 2025, 15(12), 948; https://doi.org/10.3390/nano15120948 - 18 Jun 2025
Cited by 2 | Viewed by 899
Abstract
The rational design of photoanode materials is pivotal for advancing photoelectrochemical (PEC) water splitting toward sustainable hydrogen production. This review highlights recent progress in the machine learning (ML)-assisted development of nanostructured metal oxide photoanodes, focusing on bridging materials discovery and device-level performance optimization. [...] Read more.
The rational design of photoanode materials is pivotal for advancing photoelectrochemical (PEC) water splitting toward sustainable hydrogen production. This review highlights recent progress in the machine learning (ML)-assisted development of nanostructured metal oxide photoanodes, focusing on bridging materials discovery and device-level performance optimization. We first delineate the fundamental physicochemical criteria for efficient photoanodes, including suitable band alignment, visible-light absorption, charge carrier mobility, and electrochemical stability. Conventional strategies such as nanostructuring, elemental doping, and surface/interface engineering are critically evaluated. We then discuss the integration of ML techniques—ranging from high-throughput density functional theory (DFT)-based screening to experimental data-driven modeling—for accelerating the identification of promising oxides (e.g., BiVO4, Fe2O3, WO3) and optimizing key parameters such as dopant selection, morphology, and catalyst interfaces. Particular attention is given to surrogate modeling, Bayesian optimization, convolutional neural networks, and explainable AI approaches that enable closed-loop synthesis-experiment-ML frameworks. ML-assisted performance prediction and tandem device design are also addressed. Finally, current challenges in data standardization, model generalizability, and experimental validation are outlined, and future perspectives are proposed for integrating ML with automated platforms and physics-informed modeling to facilitate scalable PEC material development for clean energy applications. Full article
(This article belongs to the Special Issue Nanomaterials for Novel Photoelectrochemical Devices)
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23 pages, 2579 KB  
Review
From Micro to Marvel: Unleashing the Full Potential of Click Chemistry with Micromachine Integration
by Zihan Chen, Zimo Ren, Carmine Coluccini and Paolo Coghi
Micromachines 2025, 16(6), 712; https://doi.org/10.3390/mi16060712 - 15 Jun 2025
Viewed by 3444
Abstract
Micromachines, small-scale engineered devices prepared to carry out exact tasks at the micro level, have garnered great interest across different fields such as drug delivery, chemical synthesis, and biomedical applications. In emerging applications, micromachines have indicated great potential in advancing click chemistry, a [...] Read more.
Micromachines, small-scale engineered devices prepared to carry out exact tasks at the micro level, have garnered great interest across different fields such as drug delivery, chemical synthesis, and biomedical applications. In emerging applications, micromachines have indicated great potential in advancing click chemistry, a highly selective and efficient chemical technique widely applied in materials science, bioconjugation, and pharmaceutical development. Click chemistry, distinguished by its rapid reaction rates, high efficiency, and bioorthogonality, serves as a robust method for molecular assembly and functionalization. Incorporating micromachines into click chemistry processes paves the way for precise, automated, and scalable chemical synthesis. These tiny devices can effectively transport reactants, boost reaction efficiency through localized mixing, and enable highly exact site-specific modifications. Moreover, micromachines driven by external forces such as magnetic fields, ultrasound, or chemical fuels provide exceptional control over reaction conditions, significantly enhancing the selectivity and efficiency of click reactions. In this review, we explore the interaction between micromachines and click chemistry, showcasing recent advancements, potential uses, and future prospects in this cross-disciplinary domain. By leveraging micromachine-supported click chemistry, scientists can surpass conventional reaction constraints, opening doors to groundbreaking innovations in materials science, drug discovery, and beyond. Full article
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34 pages, 708 KB  
Review
A Helping Hand: A Survey About AI-Driven Experimental Design for Accelerating Scientific Research
by Lukas Nolte and Sven Tomforde
Appl. Sci. 2025, 15(9), 5208; https://doi.org/10.3390/app15095208 - 7 May 2025
Cited by 2 | Viewed by 3956
Abstract
Designing and conducting experiments is a fundamental process across various scientific disciplines, such as materials science, biology, medicine, and chemistry. However, experimental research still predominantly relies on traditional, time-consuming, resource-intensive, and costly trial-and-error experimentation approaches that hinder rapid discovery, reproducibility, and scalability. Recent [...] Read more.
Designing and conducting experiments is a fundamental process across various scientific disciplines, such as materials science, biology, medicine, and chemistry. However, experimental research still predominantly relies on traditional, time-consuming, resource-intensive, and costly trial-and-error experimentation approaches that hinder rapid discovery, reproducibility, and scalability. Recent advances in artificial intelligence (AI) and machine learning (ML) offer promising alternatives, but a comprehensive overview of their implementations in experimental design is lacking. This research fills this gap by providing a structured overview and analysis of existing frameworks for AI-driven experimental design, supporting researchers in selecting and developing suitable AI-driven approaches to automate and accelerate their experimental research. Moreover, it discusses the current limitations and challenges of AI techniques and ethical issues related to AI-driven experimental design frameworks. A search and filter strategy is developed and applied to appropriate databases with the objective of identifying the relevant literature. Here, active learning, particularly Bayesian optimization, stands out as the predominantly used methodology. The majority of frameworks are partially autonomous, while fully autonomous frameworks are underrepresented. However, more research is needed in the field of AI-driven experimental design due to the low number of relevant papers obtained. Full article
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26 pages, 4052 KB  
Review
Use of Computational Intelligence in Customizing Drug Release from 3D-Printed Products: A Comprehensive Review
by Fantahun Molla Kassa, Souha H. Youssef, Yunmei Song and Sanjay Garg
Pharmaceutics 2025, 17(5), 551; https://doi.org/10.3390/pharmaceutics17050551 - 23 Apr 2025
Viewed by 889
Abstract
Computational intelligence (CI) mimics human intelligence by expanding the capabilities of machines in data analysis, pattern recognition, and making informed decisions. CI has shown promising contributions to advancements in drug discovery, formulation, and manufacturing. Its ability to analyze vast amounts of patient data [...] Read more.
Computational intelligence (CI) mimics human intelligence by expanding the capabilities of machines in data analysis, pattern recognition, and making informed decisions. CI has shown promising contributions to advancements in drug discovery, formulation, and manufacturing. Its ability to analyze vast amounts of patient data and optimize drug formulations by predicting pharmacokinetic and pharmacodynamic responses makes it a very useful platform for personalized medicine. The integration of CI with 3D printing further strengthens this potential, as 3D printing enables the fabrication of personalized medicines with precise doses, controlled-release profiles, and complex formulations. Furthermore, the automated and digital capabilities of 3D printing make it suitable for integration with CI. CI has proven useful in predicting material printability, optimizing drug release rates, designing complex structures, ensuring quality control, and improving manufacturing processes in 3D printing. In the context of customizing drug release from 3D-printed products, CI techniques have been applied to predict drug release from input variables and to design geometries that achieve the desired release profile. This review explores the role of CI in customizing drug release from 3D-printed formulations. It provides overview of limitations of 3D printing; how CI can overcome these challenges, and its potential in customizing drug release; a comparison of CI with other methods of optimization; and real-world examples of CI integration in 3D printing. Full article
(This article belongs to the Special Issue 3D Printing of Drug Delivery Systems)
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31 pages, 7019 KB  
Review
Intelligent Systems for Inorganic Nanomaterial Synthesis
by Chang’en Han, Xinghua Dong, Wang Zhang, Xiaoxia Huang, Linji Gong and Chunjian Su
Nanomaterials 2025, 15(8), 631; https://doi.org/10.3390/nano15080631 - 21 Apr 2025
Cited by 2 | Viewed by 1060
Abstract
Inorganic nanomaterials are pivotal foundational materials driving traditional industries’ transformation and emerging sectors’ evolution. However, their industrial application is hindered by the limitations of conventional synthesis methods, including poor batch stability, scaling challenges, and complex quality control requirements. This review systematically examines strategies [...] Read more.
Inorganic nanomaterials are pivotal foundational materials driving traditional industries’ transformation and emerging sectors’ evolution. However, their industrial application is hindered by the limitations of conventional synthesis methods, including poor batch stability, scaling challenges, and complex quality control requirements. This review systematically examines strategies for constructing automated synthesis systems to enhance the production efficiency of inorganic nanomaterials. Methodologies encompassing hardware architecture design, software algorithm optimization, and artificial intelligence (AI)-enabled intelligent process control are analyzed. Case studies on quantum dots and gold nanoparticles demonstrate the enhanced efficiency of closed-loop synthesis systems and their machine learning-enabled autonomous optimization of process parameters. The study highlights the critical role of automation, intelligent technologies, and human–machine collaboration in elucidating synthesis mechanisms. Current challenges in cross-scale mechanistic modeling, high-throughput experimental integration, and standardized database development are discussed. Finally, the prospects of AI-driven synthesis systems are envisioned, emphasizing their potential to accelerate novel material discovery and revolutionize nanomanufacturing paradigms within the framework of AI-plus initiatives. Full article
(This article belongs to the Section Inorganic Materials and Metal-Organic Frameworks)
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10 pages, 506 KB  
Article
Evaluation of Adrenal Metastases in Prostate Cancer Patients with [68GA]GA-PSMA PET/CT Imaging
by Ebuzer Kalender, Edanur Ekinci, Umut Elboğa and Ertan Şahin
Curr. Oncol. 2025, 32(3), 127; https://doi.org/10.3390/curroncol32030127 - 23 Feb 2025
Viewed by 1191
Abstract
Objectives: This study aimed to evaluate the imaging and clinical characteristics of adrenal metastases detected by [68Ga]Ga-PSMA PET/CT in prostate cancer patients, with a focus on diagnostic accuracy and prognostic implications. Specifically, we examined the correlation between adrenal lesion characteristics and prognostic markers, [...] Read more.
Objectives: This study aimed to evaluate the imaging and clinical characteristics of adrenal metastases detected by [68Ga]Ga-PSMA PET/CT in prostate cancer patients, with a focus on diagnostic accuracy and prognostic implications. Specifically, we examined the correlation between adrenal lesion characteristics and prognostic markers, such as prostate-specific antigen (PSA) levels and Gleason scores. This study also assessed the diagnostic performance of PSA, standardized uptake value maximum (SUVmax), and Hounsfield Unit (HU) values in differentiating adrenal metastases from benign adrenal adenomas. Materials and Methods: This retrospective study included 44 prostate cancer patients with adrenal lesions identified using [68Ga]Ga-PSMA PET/CT between January 2020 and October 2024. The patients were categorized into two groups: benign adrenal adenomas (n = 16) and adrenal metastases (n = 28). The PET/CT imaging was performed using a 5-ring Discovery IQ PET/CT scanner with QClear reconstruction, following the injection of 2.5 MBq/kg [68Ga]Ga-PSMA ligand and a standardized uptake time of 60 min. The imaging parameters (SUVmax and HU values), clinical characteristics (PSA levels, Gleason scores, and presence of lymphadenopathy), and patient outcomes were analyzed. A ROC analysis was conducted to evaluate the diagnostic performance of these key parameters. Results: Patients with adrenal metastases had significantly higher PSA levels (mean: 45.6 ± 12.4 ng/mL vs. 18.3 ± 6.7 ng/mL; p < 0.01) and Gleason scores (median: 8 vs. 6; p < 0.01) than those with benign adenomas. SUVmax values were significantly elevated in metastatic lesions (mean: 12.8 ± 4.3 vs. 3.4 ± 1.2; p < 0.001), and HU values were also higher (mean: 45 ± 15 vs. 18 ± 10; p < 0.01). The ROC analysis revealed that SUVmax had the highest diagnostic accuracy (AUC: 0.87), followed by PSA (AUC: 0.85) and HU (AUC: 0.80). Disease progression was observed in 67.9% of metastatic cases versus 18.8% in the adenoma group (p < 0.001), and median overall survival was shorter in metastatic cases (24 months vs. 38 months; p < 0.01). Conclusions: [68Ga]Ga-PSMA PET/CT is a valuable imaging modality for distinguishing adrenal metastases from benign adenomas in prostate cancer patients. The integration of PSA, SUVmax, and HU values into diagnostic workflows enhances diagnostic precision and improves clinical decision-making. Future research should focus on the prospective validation of these findings in larger cohorts and explore artificial intelligence-based approaches for automated lesion characterization. Full article
(This article belongs to the Special Issue New Aspects in Prostate Cancer Imaging)
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21 pages, 9955 KB  
Opinion
Unlocking Potential: A Comprehensive Overview of Cell Culture Banks and Their Impact on Biomedical Research
by Sabine Weiskirchen, Antonio M. Monteiro, Radovan Borojevic and Ralf Weiskirchen
Cells 2024, 13(22), 1861; https://doi.org/10.3390/cells13221861 - 10 Nov 2024
Cited by 4 | Viewed by 3591
Abstract
Cell culture banks play a crucial role in advancing biomedical research by providing standardized, reproducible biological materials essential for various applications, from drug development to regenerative medicine. This opinion article presents a comprehensive overview of cell culture banks, exploring their establishment, maintenance, and [...] Read more.
Cell culture banks play a crucial role in advancing biomedical research by providing standardized, reproducible biological materials essential for various applications, from drug development to regenerative medicine. This opinion article presents a comprehensive overview of cell culture banks, exploring their establishment, maintenance, and characterization processes. The significance of ethical considerations and regulatory frameworks governing the use of cell lines is discussed, emphasizing the importance of quality control and validation in ensuring the integrity of research outcomes. Additionally, the diverse types of cell culture banks—primary cells, immortalized cell lines, and stem cells—and their specific contributions to different fields such as cancer research, virology, and tissue engineering are examined. The impact of technological advancements on cell banking practices is also highlighted, including automation and biobanking software that enhance efficiency and data management. Furthermore, challenges faced by researchers in accessing high-quality cell lines are addressed, along with proposed strategies for improving collaboration between academic institutions and commercial entities. By unlocking the potential of cell culture banks through these discussions, this article aims to underline their indispensable role in driving innovation within biomedical research and fostering future discoveries that could lead to significant therapeutic breakthroughs. Full article
(This article belongs to the Special Issue Primary and Continued Cell Cultures)
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21 pages, 3257 KB  
Review
Democratizing Microreactor Technology for Accelerated Discoveries in Chemistry and Materials Research
by Tomomi Sato, Koji Masuda, Chikako Sano, Keiji Matsumoto, Hidetoshi Numata, Seiji Munetoh, Toshihiro Kasama and Ryo Miyake
Micromachines 2024, 15(9), 1064; https://doi.org/10.3390/mi15091064 - 23 Aug 2024
Cited by 1 | Viewed by 2806
Abstract
Microreactor technologies have emerged as versatile platforms with the potential to revolutionize chemistry and materials research, offering sustainable solutions to global challenges in environmental and health domains. This survey paper provides an in-depth review of recent advancements in microreactor technologies, focusing on their [...] Read more.
Microreactor technologies have emerged as versatile platforms with the potential to revolutionize chemistry and materials research, offering sustainable solutions to global challenges in environmental and health domains. This survey paper provides an in-depth review of recent advancements in microreactor technologies, focusing on their role in facilitating accelerated discoveries in chemistry and materials. Specifically, we examine the convergence of microfluidics with machine intelligence and automation, enabling the exploitation of the cyber-physical environment as a highly integrated experimentation platform for rapid scientific discovery and process development. We investigate the applicability and limitations of microreactor-enabled discovery accelerators in various chemistry and materials contexts. Despite their tremendous potential, the integration of machine intelligence and automation into microreactor-based experiments presents challenges in establishing fully integrated, automated, and intelligent systems. These challenges can hinder the broader adoption of microreactor technologies within the research community. To address this, we review emerging technologies that can help lower barriers and facilitate the implementation of microreactor-enabled discovery accelerators. Lastly, we provide our perspective on future research directions for democratizing microreactor technologies, with the aim of accelerating scientific discoveries and promoting widespread adoption of these transformative platforms. Full article
(This article belongs to the Section C:Chemistry)
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19 pages, 4056 KB  
Article
Optimizing Ex Vivo CAR-T Cell-Mediated Cytotoxicity Assay through Multimodality Imaging
by John G. Foulke, Luping Chen, Hyeyoun Chang, Catherine E. McManus, Fang Tian and Zhizhan Gu
Cancers 2024, 16(14), 2497; https://doi.org/10.3390/cancers16142497 - 9 Jul 2024
Viewed by 4111
Abstract
CAR-T cell-based therapies have demonstrated remarkable efficacy in treating malignant cancers, especially liquid tumors, and are increasingly being evaluated in clinical trials for solid tumors. With the FDA’s initiative to advance alternative methods for drug discovery and development, full human ex vivo assays [...] Read more.
CAR-T cell-based therapies have demonstrated remarkable efficacy in treating malignant cancers, especially liquid tumors, and are increasingly being evaluated in clinical trials for solid tumors. With the FDA’s initiative to advance alternative methods for drug discovery and development, full human ex vivo assays are increasingly essential for precision CAR-T development. However, prevailing ex vivo CAR-T cell-mediated cytotoxicity assays are limited by their use of radioactive materials, lack of real-time measurement, low throughput, and inability to automate, among others. To address these limitations, we optimized the assay using multimodality imaging methods, including bioluminescence, impedance tracking, phase contrast, and fluorescence, to track CAR-T cells co-cultured with CD19, CD20, and HER2 luciferase reporter cancer cells in real-time. Additionally, we varied the ratio of CAR-T cells to cancer cells to determine optimal cytotoxicity readouts. Our findings demonstrated that the CAR-T cell group effectively attacked cancer cells, and the optimized assay provided superior temporal and spatial precision measurements of ex vivo CAR-T killing of cancer cells, confirming the reliability, consistency, and high throughput of the optimized assay. Full article
(This article belongs to the Special Issue Innovative Immunotherapies: CAR-T Cell Therapy for Cancers)
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2 pages, 129 KB  
Abstract
Development of a Fully Automated Microfluidic Electrochemical Sensor on the ESSENCE Platform for Rapid Detection of Single-Stranded DNA
by Niranjan Haridas Menon, Maryom Rahman and Sagnik Basuray
Proceedings 2024, 104(1), 17; https://doi.org/10.3390/proceedings2024104017 - 28 May 2024
Viewed by 685
Abstract
This study presents a fully automated microfluidic electrochemical sensor for the detection of single-stranded DNA (ssDNA) on the ESSENCE platform. The sensor utilizes functionalized single-walled carbon nanotubes (SWCNTs) with short ssDNA strands immobilized through EDC-NHS coupling, placed between non-planar interdigitated electrodes. The detection [...] Read more.
This study presents a fully automated microfluidic electrochemical sensor for the detection of single-stranded DNA (ssDNA) on the ESSENCE platform. The sensor utilizes functionalized single-walled carbon nanotubes (SWCNTs) with short ssDNA strands immobilized through EDC-NHS coupling, placed between non-planar interdigitated electrodes. The detection process involves sequential flow of a background electrolyte and redox probe through the microfluidic channel before introducing the target DNA solution. The same solution is then circulated to enhance selectivity by removing non-specifically bound targets. Electrochemical impedance signals are acquired after the initial and final flow steps, utilizing changes in impedance spectra to quantify target DNA concentration. To streamline complex flow steps and eliminate manual interventions, the system integrates a fully automated fluid control system with syringe pumps, valves, and pressure sensors. Electrochemical impedance spectroscopy (EIS) data is acquired using the Analog Discovery 2 USB oscilloscope, and LabVIEW automation ensures a seamless transition from sample introduction to data acquisition. The transducer material’s flow-through design enables efficient differentiation between different degrees of base pair mismatches, extending applicability to single nucleotide polymorphisms. The system exhibits high sensitivity, detecting single-stranded DNA at concentrations as low as 1 fM within a rapid 15-min detection time. Its compact design and automated data acquisition make it a promising candidate for point-of-care biomolecule sensing, including antigens and toxins. Future applications involve functionalizing SWCNTs with relevant antibodies to enhance the platform’s capabilities for detecting a diverse range of target molecules in clinical settings. Full article
(This article belongs to the Proceedings of The 4th International Electronic Conference on Biosensors)
24 pages, 1040 KB  
Review
Non-Targeted RNA Sequencing: Towards the Development of Universal Clinical Diagnosis Methods for Human and Veterinary Infectious Diseases
by Stephen Spatz and Claudio L. Afonso
Vet. Sci. 2024, 11(6), 239; https://doi.org/10.3390/vetsci11060239 - 26 May 2024
Cited by 3 | Viewed by 2745
Abstract
Metagenomics offers the potential to replace and simplify classical methods used in the clinical diagnosis of human and veterinary infectious diseases. Metagenomics boasts a high pathogen discovery rate and high specificity, advantages absent in most classical approaches. However, its widespread adoption in clinical [...] Read more.
Metagenomics offers the potential to replace and simplify classical methods used in the clinical diagnosis of human and veterinary infectious diseases. Metagenomics boasts a high pathogen discovery rate and high specificity, advantages absent in most classical approaches. However, its widespread adoption in clinical settings is still pending, with a slow transition from research to routine use. While longer turnaround times and higher costs were once concerns, these issues are currently being addressed by automation, better chemistries, improved sequencing platforms, better databases, and automated bioinformatics analysis. However, many technical options and steps, each producing highly variable outcomes, have reduced the technology’s operational value, discouraging its implementation in diagnostic labs. We present a case for utilizing non-targeted RNA sequencing (NT-RNA-seq) as an ideal metagenomics method for the detection of infectious disease-causing agents in humans and animals. Additionally, to create operational value, we propose to identify best practices for the “core” of steps that are invariably shared among many human and veterinary protocols. Reference materials, sequencing procedures, and bioinformatics standards should accelerate the validation processes necessary for the widespread adoption of this technology. Best practices could be determined through “implementation research” by a consortium of interested institutions working on common samples. Full article
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15 pages, 1124 KB  
Review
Advances in Droplet-Based Microfluidic High-Throughput Screening of Engineered Strains and Enzymes Based on Ultraviolet, Visible, and Fluorescent Spectroscopy
by Shunyang Hu, Bangxu Wang, Qing Luo, Rumei Zeng, Jiamin Zhang and Jie Cheng
Fermentation 2024, 10(1), 33; https://doi.org/10.3390/fermentation10010033 - 30 Dec 2023
Cited by 4 | Viewed by 5529
Abstract
Genetic engineering and directed evolution are effective methods for addressing the low yield and poor industrialization level of microbial target products. The current research focus is on how to efficiently and rapidly screen beneficial mutants from constructed large-scale mutation libraries. Traditional screening methods [...] Read more.
Genetic engineering and directed evolution are effective methods for addressing the low yield and poor industrialization level of microbial target products. The current research focus is on how to efficiently and rapidly screen beneficial mutants from constructed large-scale mutation libraries. Traditional screening methods such as plate screening and well-plate screening are severely limited in their development and application due to their low efficiency and high costs. In the past decade, microfluidic technology has become an important high-throughput screening technology due to its fast speed, low cost, high automation, and high screening throughput, and it has developed rapidly. Droplet-based microfluidic high-throughput screening has been widely used in various fields, such as strain/enzyme activity screening, pathogen detection, single-cell analysis, drug discovery, and chemical synthesis, and has been widely applied in industries such as those involving materials, food, chemicals, textiles, and biomedicine. In particular, in the field of enzyme research, droplet-based microfluidic high-throughput screening has shown excellent performance in discovering enzymes with new functions as well as improved catalytic efficiency or stability, acid-base tolerance, etc. Currently, droplet-based microfluidic high-throughput screening technology has achieved the high-throughput screening of enzymes such as glycosidase, lipase, peroxidase, protease, amylase, oxidase, and transaminase as well as the high-throughput detection of products such as riboflavin, coumarin, 3-dehydroquinate, lactic acid, and ethanol. This article reviews the application of droplet-based microfluidics in high-throughput screening, with a focus on high-throughput screening strategies based on UV, visible, and fluorescence spectroscopy, including labeled optical signal detection screening, as well as label-free electrochemical detection, mass spectrometry, Raman spectroscopy, nuclear magnetic resonance, etc. Furthermore, the research progress and development trends of droplet-based microfluidic technology in enzyme modification and strain screening are also introduced. Full article
(This article belongs to the Special Issue Fermentation: Screening, Enzyme Induction and Production)
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