Search Results (21)

The slender snipe eel Nemichthys scolopaceus Richardson, 1848 is cosmopolitan in tropical and temperate seas, inhabiting the mesopelagic and bathypelagic zone between 200 and 1000 m depth. It is known to be an active predator in the DSL (Deep Scattering Layer) and the NBA (Near Bottom Aggregation), feeding mostly on decapod and euphausiid crustaceans, and playing a central role in carbon fluxes through meso- and bathypelagic ecosystems. Despite its potential importance in the deep trophic web ecosystem, the trophic ecology of Nemichthys scolopaceus is not well known. The aim of this study was to start to fill this knowledge gap. A total of 35 specimens of N. scolopaceus caught through bottom trawling in the Mediterranean Sea were analyzed in the laboratory for stomach content composition. As expected, mainly decapod crustaceans were found, in particular Plesionika martia, Pasiphaea multidentata, Funchalia woodwardi, and Robustosergia robusta species. The degree of digestion of prey in the stomachs was high in all cases. Our findings seem to confirm the specialist diet of Nemichthys scolopaceus based on shrimp-like crustaceans. Full article

Photophores are light-producing organs found in many fish species living in the mesopelagic, bathypelagic, and abyssal layers of the ocean. They function to attract prey, confuse predators, and communicate with other individuals of the same species. Understanding the structure and function of photophores is crucial to exploring bioluminescence and the ecological adaptations of marine life in deep-sea environments. The present study is the first to investigate the photophore anatomy of the mesopelagic fish Ichthyococcus ovatus (Cocco, 1838), using specimens naturally stranded along the coast of the Strait of Messina. The morphology of the ventral photophores of I. ovatus includes four functional parts: a tank containing photogenic cells, a lens filter, a reflector surrounding the entire organ, and a pigmented layer. An immunohistochemical assay was conducted using anti-nNOS and anti-S100p antibodies. The presence of nNOS/NOS type I immunolabeling the pigmented layer surrounding the photophores and the nerve fibers reaching the lens suggests a potential role of neuronal nitric oxide signaling in modulating light shielding by the pigment sheath, controlling light exposure, and adjusting light focusing though the lens-associated nerves. S100p immunostaining was observed in the nerve fibers reaching the photophores, highlighting its potential involvement in regulating neuronal calcium levels and, consequently, influencing signal transmission to control bioluminescence output. A sensory feedback pathway from the photophore to the CNS is suggested. Within the lens and in the irregularly shaped cells located in the photophore’s lens, S100p immunolabeling could indicate active signaling and differentiation processes. These findings expand our understanding of light-emitting systems in mesopelagic fishes and offer a valuable foundation for future studies on the functional and evolutionary significance of photophores. Full article

The Gulf of Mexico (GoM) is a complex oceanic basin with a maximum depth of 4000 m. It is a complex hydrodynamic system formed by different water masses with distinctive physical and biological characteristics that shape its rich biodiversity. In this study, as a contribution to better understanding the microbial communities inhabiting the meso- and bathypelagic zones of the Mexican Exclusive Economic Zone (EEZ) of the GoM, an extensive set of seawater samples was collected at three depths (350–3700 m) during three oceanographic cruises. The V4-16S rRNA gene analysis identified Pseudomonadota (27.1 ± 9.8%) and Nitrosopumilales (26.4 ± 2.3%) as the dominant bacterial and archaeal members, respectively. The depth, salinity, and apparent oxygen utilization were key environmental drivers, which explained 35% of the community variability. The mesopelagic zone presented a more homogeneous structure characterized by a nitrifier community, while the bathypelagic was more heterogeneous, with hydrocarbon-degrading bacteria and methanogens serving as the key players. This study is the first to report the archaeal community in the deeper waters of the Mexican EEZ of the GoM, playing crucial roles in the nitrogen and carbon cycles, highlighting the region’s ecological complexity and the need for further research to understand the broader biogeochemical implications of these processes. Full article

A novel Gram-stain-negative, facultatively anaerobic, and mixotrophic bacterium, designated as strain LZ166^T, was isolated from the bathypelagic seawater in the western Pacific Ocean. The cells were short rod-shaped, oxidase- and catalase-positive, and motile by means of lateral flagella. The growth of strain LZ166^T was observed at 10–45 °C (optimum 34–37 °C), at pH 5–10 (optimum 6–8), and in the presence of 0–5% NaCl (optimum 1–3%). A phylogenetic analysis based on the 16S rRNA gene showed that strain LZ166^T shared the highest similarity (98.58%) with Aquibium oceanicum B7^T and formed a distinct branch within the Aquibium genus. The genomic characterization, including average nucleotide identity (ANI, 90.73–76.79%), average amino identity (AAI, 88.50–79.03%), and digital DNA–DNA hybridization (dDDH, 36.1–22.2%) values between LZ166^T and other species within the Aquibium genus, further substantiated its novelty. The genome of strain LZ166^T was 6,119,659 bp in size with a 64.7 mol% DNA G+C content. The predominant fatty acid was summed feature 8 (C_18:1ω7c and/or C_18:1ω6c). The major polar lipids identified were diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), glycolipid (GL), and phosphatidylglycerol (PG), with ubiquinone-10 (Q-10) as the predominant respiratory quinone. The genomic annotation indicated the presence of genes for a diverse metabolic profile, including pathways for carbon fixation via the Calvin–Benson–Bassham cycle and inorganic sulfur oxidation. Based on the polyphasic taxonomic results, strain LZ166^T represented a novel species of the genus Aquibium, for which the name Aquibium pacificus sp. nov. is proposed, with the type strain LZ166^T (=MCCC M28807^T = KACC 23148^T = KCTC 82889^T). Full article

Studies based on fish early life stages can provide information on spawning grounds and nursery areas, helping to determine the implications for stock biomass fluctuations of recruitment variability. This study describes the composition, abundance, spatial distribution and differences in day/night vertical distribution of ichthyoplankton in the southern Adriatic Sea. Samples were collected within the framework of the COCONET project (Towards COast to COast NETworks of marine protected areas) from 9 to 18 May 2013 by the R/V Urania, using the electronic multinet EZ-NET BIONESS (Bedford Institute of Oceanography Net Environmental Sampling System). A total of 20 species, belonging to 20 genera and 13 families, were identified. Of the collected larvae, 74.3% were meso- or bathypelagic species, 24.7% were epipelagic and 0.9% were demersal. The community was dominated by Gonostomatidae, followed by Engraulidae, Myctophidae and Photychthaidae. The most abundant species was Cyclothone braueri (45.6%), followed by Engraulis encrasicolus, Ceratoscopelus maderensis, Cyclothone pygmaea, Vinciguerria attenuata and Myctophum punctatum. An inshore/offshore increasing gradient in biodiversity and abundance was observed. Different weighted mean depths (WMDs) were observed for larvae and juveniles. No diel vertical migrations were observed. The high abundance of meso- or bathypelagic species in the upper 100 m confirms the epipelagic zone as an important environment for the development of the larval stages of these fish. Full article

The Kuril–Kamchatka Trench (North-West Pacific Ocean) is included in the deepest trenches (>9000 m). This study is the first that aims at uncovering the bathyal prokaryotic diversity (1000–2000 m) of this fascinating extreme environment. The analysis of α-diversity revealed that bacterial communities showed greater diversity than archaeal communities and that both communities were characterized by poor evenness (indicative of the presence of few dominant OTUs). The metabarcoding analysis showed that Proteobacteria (65.5–90.7%), Bacteroidetes (2.4–10.7%), and Actinobacteria (2.5–9.6%) were the highly represented phyla of bacteria, with Acinetobacter (21.5–62.5%) as the most abundant genus. Moreover, the recently described Pseudofrancisella genus, which has been isolated from estuarine environments, has been found among the major bacterial taxa. This work represents the first report stating the presence of this genus in bathyal waters. The archaeal communities were dominated by the phylum Thaumarchaeota (53.6–94.0%), with Nitrosopumilus (53.6–94%) as its representative genus. The functional diversity analysis revealed that overall, the bacterial communities had a higher involvement in the carbon and nitrogen biogeochemical cycles, with chemoheterotrophy (mostly aerobic), aromatic compound degradation, and nitrate reduction as the most represented functions. In the archaeal communities, the most represented ecological function was the aerobic oxidation of ammonia (first stage of nitrification), a functional feature characteristic of Nitrosopumilus. Full article

Pelagic bacterioplankton exhibit biogeographical patterns linked with exporting organic carbon and energy fluxes into the deep ocean. However, knowledge of the mechanisms shaping deep-sea bacterial communities remains largely elusive. In this study, we used high throughput sequencing of the 16S rRNA gene to reveal significant annual bacterioplankton community dynamics in the South China Sea during three summer cruises (2016–2018). As we expected, the epipelagic–bathypelagic connective amplicon sequence variants (ASVs, mostly belonging to Actinobacteriota, Firmicutes, and Cyanobacteria) suggested that they not only affect the community structure but also influence the carbon cycling functions of bathypelagic bacterioplankton in different years. However, the microbial source tracking (MST) analysis indicated that the directly linked proportions between the bathypelagic and epipelagic samples were minimal. Thus, the epipelagic bacteria communities may form “seeds” rather than directly sinking into the deep ocean to influence bathypelagic bacteria. This study provides a new perspective on the mechanisms shaping the deep ocean bacterioplankton communities. Full article

Disentangling the role of factors responsible for juvenile fish dispersal is essential to understand the ecology of individual species, setting the corresponding conservation status and evaluating the potential risk in case of invasion. Because of their small body size and high sensitivity to environmental conditions, juvenile fish movements have largely been explained by external factors such as wind-induced water currents. In this study, early hatched pikeperch (Sander lucioperca) of hatchery origin were marked with oxytetracycline hydrochloride, stocked into a bay near the dam of a deep reservoir, and then monitored at approximately 10-day intervals using fix-frame trawling for 43 and 51 days after stocking, in 2007 and 2008, respectively. In both years, marked pikeperch were captured throughout the study period in the bay and closed dam section of the reservoir. After one month, individuals were captured in the middle section of the reservoir, approximately 5 km upstream from the stocking site. Four individuals were recaptured in the tributary section of the reservoir, about 10 km upstream from the stocking site during the last sampling in 2007. The farthest distance detection followed periods of strong wind. During daytime sampling, marked pikeperch were captured in both the warm epipelagic layer above the thermocline and the cold bathypelagic layer below the thermocline. The later sampling represented a community of vertically migrating individuals originally thought to consist only of reservoir-born and reservoir-experienced fish. This study suggested the high mobility and flexibility of 0+ pikeperch, as well as their unexpected behavioral plasticity. Full article

The consequences of climate change may directly or indirectly impact the marine biosphere. Although ocean stratification has been recognized as one of the crucial consequences of ocean warming, its impacts on several critical aspects of marine microbes remain largely unknown in the Indian Ocean. Here, we investigate the effects of water stratification, in both surface and subsurface layers, on hydrogeographic parameters and bacterioplankton diversity within the equatorial eastern Indian Ocean (EIO). Strong stratification in the upper 200 m of equatorial EIO was detected with evidential low primary productivity. The vertical bacterioplankton diversity of the whole water columns displayed noticeable variation, with lower diversity occurring in the surface layer than in the subsurface layers. Horizontal heterogeneity of bacterioplankton communities was also in the well-mixed layer among different stations. SAR11 and Prochlorococcus displayed uncharacteristic low abundance in the surface water. Some amplicon sequence variants (ASVs) were identified as potential biomarkers for their specific depths in strongly-stratified water columns. Thus, barriers resulting from stratification are proposed to function as an ‘ASV filter’ to regulate the vertical bacterioplankton community diversity along the water columns. Overall, our results suggest that the effects of stratification on the structure and diversity of bacterioplankton can extend up to the bathypelagic zone in the strongly-stratified waters of the equatorial EIO. This study provides the first insight into the effect of stratification on the subsurface microbial communities in the equatorial eastern Indian Ocean. Full article

A vertical pattern of fractionated polycyclic aromatic hydrocarbons (PAH) was studied in the Japan Basin in the Sea of Japan. The highest PAH concentration was found in the mesopelagic realm, possibly resulting from deep convection and/or subduction of intermediate water and its biogeochemical setting in the western Japan Basin. Using ²²⁶Ra and ²²⁸Ra as tracers revealed the PAH load in the open sea from the coastal polluted water. Dissolved PAHs (DPAH, fraction < 0.5 µm) were significantly prevalent particulate PAHs (PPAH, fraction > 0.5 µm) at all depths, associated with a predominance of dissolved organic carbon (DOC) over particulate organic carbon (POC). Hydrophobicity was more important for higher-molecular-weight PAHs to be distributed between particles and the solution, while the high K_oc of low-molecular-weight PAHs indicated that their partitioning was driven by other factors, such as adsorbing of soot particles. PPAH and DPAH profiles differed from the POC and DOC profiles; nevertheless, a positive moderate correlation was found for DPAH and DOC for depths below the epipelagic, suggesting the similarity of the mechanisms of input of dissolved organic matter and DPAH into the deep interior of the Sea of Japan. The PAH flux calculations showed that biological pumps and overturning circulation contribute almost equally to removing PAHs from the bathypelagic waters of the Japan Basin. Full article

Cephalopods are important in Arctic marine ecosystems as predators and prey, but knowledge of their life cycles is poor. Consequently, they are under-represented in the Arctic ecosystems assessment models. One important parameter is the change in ecological role (habitat and diet) associated with individual ontogenies. Here, the life history of Gonatus fabricii, the most abundant Arctic cephalopod, is reconstructed by the analysis of individual ontogenetic trajectories of stable isotopes (δ¹³C and δ¹⁵N) in archival hard body structures. This approach allows the prediction of the exact mantle length (ML) and mass when the species changes its ecological role. Our results show that the life history of G. fabricii is divided into four stages, each having a distinct ecology: (1) epipelagic squid (ML < 20 mm), preying mostly on copepods; (2) epi- and occasionally mesopelagic squid (ML 20–50 mm), preying on larger crustaceans, fish, and cephalopods; (3) meso- and bathypelagic squid (ML > 50 mm), preying mainly on fish and cephalopods; and (4) non-feeding bathypelagic gelatinous females (ML > 200 mm). Existing Arctic ecosystem models do not reflect the different ecological roles of G. fabricii correctly, and the novel data provided here are a necessary baseline for Arctic ecosystem modelling and forecasting. Full article

Species occurring in sympatry and relying on similar and limited resources may partition resource use to avoid overlap and interspecific competition. Aotearoa, New Zealand hosts an extraordinarily rich marine megafauna, including 50% of the world’s cetacean species. In this study, we used carbon and nitrogen stable isotopes as ecological tracers to investigate isotopic niche overlap between 21 odontocete (toothed whale) species inhabiting neritic, mesopelagic, and bathypelagic waters. Results showed a clear niche separation for the bathypelagic Gray’s beaked whales (Mesoplodon grayi) and sperm whales (Physeter macrocephalus), but high isotopic niche overlap and potential interspecific competition for neritic and mesopelagic species. For these species, competition could be reduced via temporal or finer-scale spatial segregation or differences in foraging behaviour. This study represents the first insights into the coexistence of odontocetes in a biodiverse hotspot. The data presented here provide a critical baseline to a system already ongoing ecosystem change via ocean warming and subsequent effects on prey abundance and distributions. Full article

Marine viruses are widely distributed and influence matter and energy transformation in ecosystems by modulating hosts’ metabolism. The hadal trenches represent the deepest marine habitat on Earth, for which the viral communities and related biogeochemical functions are least explored and poorly understood. Here, using the sediment samples (8720 m below sea level) collected from the New Britain Trench (NBT), we investigated the viral community, diversity, and genetic potentials in the hadal sediment habitat for the first time by deep shotgun metagenomic sequencing. We found the NBT sediment viral community was dominated by Siphoviridae, Myoviridae, Podoviridae, Mimiviridae, and Phycodnaviridae, which belong to the dsDNA viruses. However, the large majority of them remained uncharacterized. We found the hadal sediment virome had some common components by comparing the hadal sediment viruses with those of hadal aquatic habitats and those of bathypelagic and terrestrial habitats. It was also distinctive in community structure and had many novel viral clusters not associated with the other habitual virome included in our analyses. Further phylogenetic analysis on its Caudovirales showed novel diversities, including new clades specially evolved in the hadal sediment habitat. Annotation of the NBT sediment viruses indicated the viruses might influence microbial hydrocarbon biodegradation and carbon and sulfur cycling via metabolic augmentation through auxiliary metabolic genes (AMGs). Our study filled in the knowledge gaps on the virome of the hadal sediment habitats and provided insight into the evolution and the potential metabolic functions of the hadal sediment virome. Full article

The rapidly increasing global populations and socio-economic development in the Global South have resulted in rising demand for natural resources. There are many plans for harvesting natural resources from the ocean floor, especially rare metals and minerals. However, if proper care is not taken, there is substantial potential for long-lasting and even irreversible physical and environmental impacts on the deep-sea ecosystems, including on biodiversity and ecosystem functioning. This paper reviews the literature on some potentials and risks to deep seabed mining (DSM), outlining its legal aspects and environmental impacts. It presents two case studies that describe the environmental risks related to this exploitative process. They include significant disturbance of the seabed, light and noise pollution, the creation of plumes, and negative impacts on the surface, benthic, and meso- and bathypelagic zones. The study suggests some of the issues interested companies should consider in preventing the potential physical and environmental damages DSM may cause. Sustainable mining and the use of minerals are vital in meeting various industrial demands. Full article

Copepods are one of the most abundant and diverse live food sources for mesopelagic and bathypelagic fishes and crustaceans. They could contribute to the overlap of the transition period from live feed to an artificial weaning diet in marine larvae production. However, the culture conditions still need optimization to provide sufficient production to cover the increasing demand for marine hatcheries. Therefore, the present study investigated the effects of different salinity levels (5, 10, 15, 20, 25, and 30 ppt) on the population growth, growth rate, and population composition (males, females, copepodite, and nauplii ratio) of the marine copepod, Oithona nana. The experiment continued for 15 days, under laboratory-controlled conditions of temperature (27 ± 1 °C), pH (7.7 ± 0.15), and continuous gentle aeration in 30 L glass aquaria. The copepod culture aquaria were supplemented with a mixture of soybean and yeast (0.5 g 10⁻⁶ individual⁻¹ 24-h⁻¹) as a feed source. The highest significant population growth and population growth rate of O. nana were achieved with a salinity level of 20 ppt. Regarding population composition, O. nana cultured at the salinity level of 20 ppt recorded the highest significant percentages of copepodite and nauplii. The results concluded that copepod, O. nana, is capable of withstanding abrupt changes in the salinity, but there are limits to their tolerance, with an optimal salinity level of 20 ppt. This salinity level achieved the highest population growth and the highest percentages of copepodite and nauplii of marine Copepoda, O. nana. Full article