Search Results (43)

Despite an abundance of available research, calf mortality persists as a multifaceted phenomenon that presents ongoing challenges in practical management. This historical single-cohort study was conducted to provide a more comprehensive layer of knowledge to the existing information pool on calf mortality risk factors by using multiblock partial least squares analysis. The method reveals the contribution of several variables aggregated into thematic blocks and allows to include multiple outcome variables describing the same phenomenon. Such an analysis of the data provides valuable information to farmers, veterinarians, and advisors alike, not only about single risk factors, but also about management areas to prioritize when tackling calf mortality. Data was gathered from 118 Estonian dairy herds, each comprising ≥100 cows, via questionnaire, sample collection, and on-farm scoring and measurements. The final dataset included 147 questions divided into 13 meaningful blocks. The outcome variables were annual herd-level calf mortality risk during the first 21 days (MR21) and 22–90 days (MR90) using farm records and the national cattle database, respectively. The average MR21 was 5.9% (median 4.4%, range 0.0–26.8%) and the average MR90 was 2.7% (median 2.3%, range 0.0–12.7%). Of the 13 thematic variable blocks, the most important blocks explaining calf mortality were ‘Routine stress-inducing activities’, ‘Herd characteristics’, ‘Calving management’, ‘Calf housing during 5–21 days’, and ’External biosecurity’. The most influential single variables associated with higher overall calf on-farm mortality during the preweaning period were poorer cleanliness scores of calving animals and calves having access to an outdoor area during the first 21 days of life. Detected risk factors for MR21 were calf barn age > 20 years, allowing the calves to suckle the first colostrum, bucket feeding calves during the first three weeks, disbudding all calves (compared to only heifer calves), and disbudding at 21–29 days of age. Risk factors for MR90 included the use of automatic milk feeders and feeding waste milk during the first three weeks, early introduction of calves to large group pens and higher in-pen age differences, absence of forced ventilation during the first three weeks, opportunity for feces to spread between calf pens, and use of calving pens for sick animals. Washing and disinfection of newborn calves’ pens and testing colostrum quality were protective factors against both MR21 and MR90. Other protective practices for MR21 were related to proper colostrum feeding routines, whereas lower MR90 was mostly associated with efficient external biosecurity practices and vaccination programs. The multiblock model proved to be beneficial in providing a broader understanding of the importance of different management areas on calf mortality. Full article

The broiler industry is the most developed livestock sector in Cameroon. This study aimed to evaluate the relationship between biosecurity implementation with production performance and antibiotic usage in broiler farms in Cameroon. Data concerning biosecurity, production performance (average daily gain or ADG, mortality rate, feed conversion ratio or FCR, and performance index or PI), and antimicrobial usage (AMU) were collected in 57 farms in the Adamawa and North regions. The average total biosecurity score of broiler farms was 52/100. ADG (46.54 ± 5.18 g versus 43.80 ± 4.16 g), FCR (1.59 ± 0.61 versus 1.75 ± 0.58), mortality rate (2.47% versus 6.65%), and PI (339.21 ± 105.79 versus 268.22 ± 101.09) were statistically better in farms with good biosecurity. The majority of antibiotics used (55.2%) were classified as critically important for human medicine, with 83.9% of antibiotics underdosed/overdosed. No correlation was found between biosecurity and AMU, although there was a trend towards reduced use in farms with good biosecurity. The misuse of antibiotics will result in an increased development of antimicrobial resistance, which can be transmitted to humans. This study highlights the importance of biosecurity in improving poultry performance and reducing AMU. Continuous training and awareness-raising efforts among farmers on the importance of biosecurity are needed to reduce AMU and improve farmers’ profitability. Full article

African swine fever (ASF), a viral hemorrhagic disease with exceptionally high lethality in domestic pigs and Eurasian wild boar, reached Germany in 2020, with the confirmation of the first case in a wild boar next to the border to Poland. Since then, 6621 cases in wild boar but only 19 outbreaks in domestic pigs were confirmed. Biosecurity is crucial in preventing the infection of domestic pig holdings. Already in 2019, an online assessment tool, the so-called “ASP-Risikoampel” (ASF risk traffic light), was launched. It enables farms to identify ASF-specific weaknesses and take targeted measures to minimize risks/optimize the biosecurity standard anonymously and free of charge. The development of the tool incorporating expert opinion elicitation in a Delphi process is detailed and the results of 2290 self-assessments of farms between 2019 and 2023 are evaluated. The proportion of tool utilization relative to the average number of holdings in Germany in this time span was 11.9% with marked differences between the federal states. Most of the farms achieved biosecurity scores above 66.7%, qualifying for a “green traffic light”. The results were significantly different among the federal states. The best performing states were those with the largest mean farm size. The latter was significantly correlated with performance on the farm level. Full article

Plant-parasiticnematodes represent a significant biosecurity threat in cross-border plant quarantine, necessitating precise identification for effective border control. While DL models have demonstrated success in nematode image classification based on morphological features, the limited availability of high-quality samples and the species-specific nature of nematodes result in insufficient training data, which constrains model performance. Although generative models have shown promise in data augmentation, they often struggle to balance morphological fidelity and phenotypic diversity. This paper proposes a novel few-shot data augmentation framework based on a morphology-constrained latent diffusion model, which, for the first time, integrates morphological constraints into the latent diffusion process. By geometrically parameterizing nematode morphology, the proposed approach enhances topological fidelity in the generated images and addresses key limitations of traditional generative models in controlling biological shapes. This framework is designed to augment nematode image datasets and improve classification performance under limited data conditions. The framework consists of three key components: First, we incorporate a fine-tuning strategy that preserves the generalization capability of model in few-shot settings. Second, we extract morphological constraints from nematode images using edge detection and a moving least squares method, capturing key structural details. Finally, we embed these constraints into the latent space of the diffusion model, ensuring generated images maintain both fidelity and diversity. Experimental results demonstrate that our approach significantly enhances classification accuracy. For imbalanced datasets, the Top-1 accuracy of multiple classification models improved by 7.34–14.66% compared to models trained without augmentation, and by 2.0–5.67% compared to models using traditional data augmentation. Additionally, when replacing up to 25% of real images with generated ones in a balanced dataset, model performance remained nearly unchanged, indicating the robustness and effectiveness of the method. Ablation experiments demonstrate that the morphology-guided strategy achieves superior image quality compared to both unconstrained and edge-based constraint methods, with a Fréchet Inception Distance of 12.95 and an Inception Score of 1.21 ± 0.057. These results indicate that the proposed method effectively balances morphological fidelity and phenotypic diversity in image generation. Full article

Therapeutic education (TE) plays a central role in the management of chronic inflammatory rheumatic diseases and inflammatory bowel disease. The BIOSECURE questionnaire was developed and validated in 2012 to assess self-management and patient safety, initially in rheumatology. Objectives: The aim of our study was to assess the knowledge of patients followed in both rheumatology and gastroenterology regarding their treatment through the BIOSECURE questionnaire. The secondary objective was to identify factors associated with a low level of knowledge according to the BIOSECURE questionnaire. Methods: This was a descriptive observational study, conducted in a single center at the Reims University Hospital between January 2023 and April 2024. The population was divided into quartiles. Participation in therapeutic education (TE) included receiving brochures about their disease or treatment and/or participation in group or individual TE sessions. We compared the patients with the lowest scores to those with the highest scores. Results: The study population consisted of 312 patients, including 32.05% with rheumatoid arthritis (RA) and 29.81% with Crohn’s disease. In our population, 82.03% had participated in therapeutic education, which included a TE session and/or the distribution of brochures about their disease and/or treatment. The median [IQR] BIOSECURE score was 71.04/100 [IQR 61.77–81.9]. When comparing patients with a low BIOSECURE score (<61.77) to those with a high score (>81.9), univariate factors associated with a low score were older age (p = 0.02), less participation in therapeutic education (p = 0.01), shorter duration of targeted therapy (p = 0.01), and lower level of education (p < 0.05). Conversely, patients who had received therapeutic education had a higher BIOSECURE score (p = 0.01). There was no difference in BIOSECURE scores based on place of residence, location of patient follow-up, route of administration, or type of inflammatory disease. In a multivariate analysis with a model including age, TE participation, and duration of targeted therapy, the results remained significant (p < 0.05). Discussion: We were able to compare the results of our study with two other French studies previously conducted on the same population of 677 patients undergoing biotherapy for chronic inflammatory rheumatism. The median BIOSECURE score in those studies was 73/100. In the study by Rat AC, published in 2017, the population was divided based on their BIOSECURE questionnaire results into three groups; they compared high and low response levels. Similarly to our study, a lower educational level and unemployment were associated with a lower rate of correct responses. The same was true for the absence of therapeutic education (TE) or distribution of brochures. Conclusions: The analysis of the BIOSECURE questionnaire in our population provides a practical message: factors associated with a low BIOSECURE score include older age, lower educational level, recent initiation of targeted therapy, and lack of participation in therapeutic education. This population could be a priority target for TE in order to ensure treatment safety for these patients. Full article

Respiratory diseases, such as pleurisy and pneumonia, cause significant health and economic losses in pig production. This study evaluated 867 finishing pigs from a farm with a history of respiratory issues, using macroscopic lesion scoring (SPES and CVPC), histopathological analysis, qPCR diagnostics, and economic modeling. Severe pleurisy (scores 3 and 4) was observed in 42.1% of carcasses and was strongly correlated with higher bacterial loads of Mycoplasma hyopneumoniae, Actinobacillus pleuropneumoniae, and Pasteurella multocida. Severe lesions reduced the average daily gain (ADG) and carcass weight, leading to increased production costs and lower profitability. Economic analysis revealed that pigs with higher pleurisy scores incurred an additional cost per kg (USD 1.29 vs. USD 1.32 for milder cases), reduced total revenue by 1.36%, and decreased return on investment (ROI) from 5.33% to 3.90%. These findings emphasize the critical impact of respiratory diseases on profitability and the necessity of robust health management strategies, including vaccination and enhanced biosecurity, to minimize economic losses in swine farming. Full article

Poultry farming in Ethiopia is crucial for food security and income, but it faces significant challenges due to gaps in farmer awareness. A cross-sectional study was conducted using the Biocheck.UGent™ biosecurity scoring system and a questionnaire to evaluate poultry farmers’ basic and practical knowledge concerning salmonellosis and mycotoxins. The questionnaire revealed substantial gaps in basic and practical knowledge regarding Salmonella spp infections and mycotoxin among 38 poultry farmers in Jimma. About 68.4% of farmers were unaware of the impact of salmonellosis on both poultry and human health. Moreover, 78.9% had limited basic knowledge of how salmonellosis affects production and the economy. Farmers also showed limited practical knowledge of farm management and hygiene practices essential for preventing Salmonella spp. infections. Regarding mycotoxins, 63.2% of farmers lacked awareness of poultry feed management, 60.5% were unaware of the health risks mycotoxins pose, and 73.7% did not recognize signs of mycotoxin contamination. Although 55.3% of farmers demonstrated acceptable practical knowledge of strategies to reduce the impact of mycotoxin contaminations, there are still concerns, particularly since 65.8% and 55.3% only showed moderate practical knowledge of feed storage and mycotoxin prevention, respectively. The overall biosecurity scores of poultry farms were below the global average, with a score of 41.7 compared to the worldwide average of 64. The overall mean score for external biosecurity was 44.9, below the global average of 63. All 3 scoring platforms and biosecurity parameters indicated that internal biosecurity was the weakest aspect, with a score of 31.6, well below the global standard of 64. The results showed a weak correlation (rₛ = 0.06) between farmers’ basic and practical knowledge scores about Salmonella spp. infections and mycotoxins. Similarly, there was a weak correlation between the poor biosecurity score of poultry farms and the basic and practical knowledge of poultry farmers on Salmonella spp. infections (rₛ = 0.17) and mycotoxins (rₛ = 0.25). In conclusion, the study found that poultry farmers in Jimma had poor basic and practical knowledge scores on Salmonella, mycotoxins, and biosecurity measures. Thus, awareness creation is paramount to improve these gaps to reduce the impact of mycotoxin contamination and poultry diseases and consequently to improve food security and food safety. Full article

This study evaluated prevalence and risk factors in health, management, and biosecurity of bovine coronavirus (BCoV) in neonatal and weaned dairy calves on 125 dairy farms in Europe. Nasal and fecal swabs from neonatal calves, weaned calves, and fresh cows were analyzed for BCoV using RT-PCR, and blood and bulk milk samples were collected for BCoV antibody levels using ELISA. Multiple logistic regression models with random effects of herds were used to evaluate the herd health status, husbandry, management, and biosecurity associated with BCoV shedding (nasal and/or fecal PCR positive samples) in neonatal and weaned calves. BCoV was detected in 80% of herds and in 24% of neonatal calves, 23% of weaned calves, and 5% of fresh cows. The biosecurity scored on 109 dairies with Biocheck.Ugent was, on average, 60% (external score 71%, internal score 47%), and there was no clear association between various biosecurity measures on BCoV shedding in calves. Dry cow vaccination against BCoV reduced shedding in neonatal calves, whereas it was linked to increased shedding in weaned calves in these farms. Several husbandry factors, including nutrition (transition milk feeding and milk feeding levels) and management (group housing and weaning age), were associated with BCoV shedding in calves. Full article

Crop monitoring is a fundamental practice in seaweed aquaculture. Seaweeds are vulnerable to several threats such as ice-ice disease (IID) causing a whitening of the thallus due to depigmentation. Crop condition assessment is important for minimizing yield losses and improving the biosecurity of seaweed farms. The recent influence of modern technology has resulted in the development of precision aquaculture. The present study focuses on the exploitation of spectral reflectance in the visible and near-infrared regions for characterizing the crop condition of two of the most cultivated Eucheumatoids species: Kappaphycus alvareezi and Eucheuma denticulatum. In particular, the influence of spectral resolution is examined towards discriminating: (a) species and morphotypes, (b) different levels of seaweed health (i.e., from healthy to completely depigmented) and (c) depigmented from silted specimens (thallus covered by a thin layer of sediment). Two spectral libraries were built at different spectral resolutions (5 and 45 spectral bands) using in situ data. In addition, proximal multispectral imagery using a drone-based sensor was utilised. At each experimental scenario, the spectral data were classified using a Random Forest algorithm for crop condition identification. The results showed good discrimination (83–99% overall accuracy) for crop conditions and morphotypes regardless of spectral resolution. According to the importance scores of the hyperspectral data, useful wavelengths were identified for discriminating healthy seaweeds from seaweeds with varying symptoms of IID (i.e., thalli whitening). These wavelengths assisted in selecting a set of vegetation indices for testing their ability to improve crop condition characterisation. Specifically, five vegetation indices (the RBNDVI, GLI, Hue, Green–Red ratio and NGRDI) were found to improve classification accuracy, making them recommended for seaweed health monitoring. Image-based classification demonstrated that multispectral library data can be extended to photomosaics to assess seaweed conditions on a broad scale. The results of this study suggest that proximal sensing is a first step towards effective seaweed crop monitoring, enhancing yield and contributing to aquaculture biosecurity. Full article

Veterinary coaching was tested to assess its efficacy in promoting adherence to biosecurity procedures. Poultry farmers (n = 13) in Belgium were profiled using ADKAR^®, coached and audited prior to and 6 months after coaching. The ADKAR^® (Awareness, Desire, Knowledge, Ability, and Reinforcement) profiling technique identified 5/13 participating farmers with relatively low scores (≤3) for one or more elements that block change (biosecurity compliance in this case). Education was the only demographic variable that influenced knowledge scores. Through the Biocheck.Ugent^TM methodology, farm biosecurity was assessed and benchmarked to allow for tailored guidance. The farmer, farm veterinarian, and coach defined a farm-specific action plan that covered infrastructure, site access, staff/visitors, purchase policies, transport and depopulation, feed and water supplies, flock management, cleaning and disinfection between flocks, and measures between houses. From a total of 49 proposed actions, 36 were adopted. Purchasing policy had the highest (100%) and cleaning and disinfection had the lowest compliance (38%). Time, cost, and feasibility (e.g., inadequate farm layout) were the main reasons cited for not implementing action points. Overall, biosecurity improved significantly (p = 0.002) from 67.1 ± 5.7% to 70.3 ± 5.7% (mean ± Std. dev). The study, hence, presents convincing proof of how coaching can lead to new solutions not previously considered. Full article

Given the significance of goat farming in Greece, our study aimed to explore biosecurity conditions on goat farms and refers to an investigation performed on 119 farms countrywide in Greece. The objective of the present work was to evaluate and report on potential associations between the socio-demographic characteristics of goat farmers and practices that play a role in biosecurity on farms. Data were obtained during a large cross-sectional study performed across Greece in 119 goat herds. The socio-demographic characteristics of farmers, as well as 16 variables related to biosecurity, were recorded; these were practices or events that could potentially enhance or compromise biosecurity on farms. A score based on all the biosecurity-related variables was devised by assigning a ‘1’ or ‘−1’ mark for each variable recorded on a farm that could enhance or compromise, respectively, biosecurity. Among variables potentially enhancing biosecurity on farms, the application of disinfections on the farm and the maintenance of isolation for sick animals were practiced more frequently; among variables potentially compromising biosecurity on farms, the presence of hunters in the area around the farm and grazing practices for animals were recorded more frequently. The median overall score for biosecurity-related practices for all farms in the study was 1 (interquartile range: 2.5; minimum: −4; maximum: 5). Among socio-demographic characteristics, the presence of working staff on a farm was associated with five individual biosecurity-related practices and the length of farming experience with three individual biosecurity-related practices. In the multivariable analysis, female farmers (p = 0.007) and the presence of working staff on the farm (p = 0.025) emerged as the two significant socio-demographic characteristics with an association with the overall biosecurity level on farms. This knowledge can be useful when developing biosecurity programs on goat farms. Recognition of locally applied farm-level practices enhancing biosecurity could form a basis for farmers to apply more rigorous and effective relevant plans. Full article

Unusual or extraordinary circumstances can cause change to normal husbandry regimes and daily care of managed animals. Increased biosecurity due to disease risk, for example, results in animals experiencing restrictions. Outbreaks of Highly Pathogenic Avian Influenza (HPAI) have caused zoos to remove birds from their regular exhibits and manage them indoors or in covered enclosures to reduce the likelihood of an HPAI outbreak on site. To date, there has been little research on the impacts of such husbandry change on bird behaviour and welfare. This paper examines the effect of an HPAI-induced enforced housing order (HO) on the behaviour and physical condition of a flock of Chilean flamingos in a UK zoo. Using ZooMonitor to record flock-wide behaviour patterns and scoring plumage condition, we collected data on flamingos during a housing order, immediately after lifting of the HO, and after a period of acclimation to their regular routine. Results showed that flamingos were very inactive under a HO and after release, that abnormal, redirected foraging actions occurred during the HO and after release, and that flamingos were more alert under the HO. An increase in records of good plumage condition correlated with social behaviour, inactivity, higher temperatures, and rain. This research highlights the multifactorial influences on zoo animal behaviour and shows why information on the animals, their inputs, the behavioural outputs they present, and their physical attributes should all be gathered and evaluated together to best understand the influences of husbandry and management changes on behaviour and welfare. Full article

This paper describes the selection and validation of supporting measures (SMs) aimed at enhancing biosecurity compliance within Italian poultry farms. A tailored methodology, based on a stakeholders’ survey involving farmers and advisors, included a virtual farm tour, group discussion, and farmer coaching. Virtual farm tours and group discussions were delivered during two meetings targeting meat and egg production stakeholders, separately. Coaching was validated in 26 pilot farms (PFs) by assessing farmers’ attitudes towards change (i.e., ADKAR^®) and farms’ biosecurity score (i.e., Biocheck.Ugent^TM) before and after a minimum six-month period. A total of 20 out of 26 farmers agreed to implement at least one action plan (AP). Full implementation of the agreed APs was observed in ten farms, while others only partially implemented (n = 7) or did not implement (n = 3) the improvement. Most APs focused on enhancing house hygiene locks (n = 7), followed by bacterial auto-control after cleaning and disinfection (n = 4). Scoring tools indicated minimal or no variations in farmers’ attitudes towards change and farm biosecurity. Virtual farm tours and group discussions were found to be effective in fostering interaction and facilitating the exchange of experiences and knowledge among farmers and stakeholders of poultry production. Coaching indicated that farmers might prefer implementing minor changes possibly influenced by time and cost constraints associated with structural interventions. These limitations could have also impacted the scores of the farmer/farm. The findings of this study provide a foundation for further application of SMs to improve biosecurity in Italian poultry farms. Full article

Poultry producers’ attitudes towards biosecurity practices were assessed by using the ADKAR^® (Awareness, Desire, Knowledge, Ability, and Reinforcement) behavioral change model. Conventional poultry producers (n = 155) from different production types including broilers (n = 35), layers (n = 22), breeders (n = 24), turkeys (n = 19), ducks (n = 23), free-range broilers (n = 11), free-range layers (n = 11), and hatcheries (n = 10) from seven European countries were scored for each ADKAR element (1 = total absence to 5 = perfect fulfilment). Each country performed selected interventions (e.g., coaching, participatory meetings, etc.) to improve biosecurity compliance. After the interventions, significant change was observed in three of the four attitude elements. The overall mean scores ($\overline{\mathrm{x}}$ ± SD) obtained during the initial assessment (n = 130) were 4.2 ± 0.6 for Awareness, 4.1 ± 0.7 for Desire, 3.8 ± 0.8 for Knowledge, and 4.0 ± 0.7 for Ability, whereas after intervention, the scores were A = 4.3 ± 0.6, D = 4.2 ± 0.7, K = 4.1 ± 0.7, and Ab = 4.1 ± 0.7. The Reinforcement component was only evaluated after the change and obtained a score of 3.7 ± 0.7 on average. Identifying the elements influencing poultry producers and their behavior related to farm management decisions was useful in guiding our educational interventions to effectively change their behavior. Full article

The use of antimicrobials in swine production is an issue that concerns the whole world due to their impact on animal and public health. This study aimed to verify the antimicrobial use in 29 commercial full-cycle farms in the midwestern region of the state of Minas Gerais, since this region is a hub of intensive pig farming in Brazil, as well as the possible correlations between the use of antimicrobials, biosecurity, and productivity. A total of 28 different drugs used for preventive purposes were described. On average, the herds used seven drugs, exposing the piglets for 116 days and totaling 434.17 mg of antimicrobials per kilogram of pig produced. Just eight active ingredients made up 77.5% of the total number of drugs used on the studied herds. Significant differences were found between the variables, biosecurity score and number of sows, antimicrobial amount and number of drugs, number of drugs and number of sows, and between productivity and biosecurity scores. The use of antimicrobials was considered excessive in the swine farms in the state of Minas Gerais compared to what was reported in Brazil and in other countries. Educational measures and better control should be proposed to reduce the preventive use of antimicrobials. Full article